cluster # 2387

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Oryza sativa
cluster # 2387 cluster # 2387 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2387#0 length = 636 sequences # 1

consensus_2387#1 length = 363 sequences # 1

consensusID : consensus_2387#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [TTTTTTTTTTTTAAGGACAATTTCAACATTTCATAGAATTTCCCAAGGAGCAAGGGAAAAATTCAATATTTTCTTTCAACATATTTGCCAATCTTGTGTCAGGGAAAAGATCGATGAAAAAAGCGGTGTGTGATTGGCAGCAGTAACGAAACTTGACGACGGTGTATATGTACTAGTATATACTGTATACAAGTTCTCTGTATGTGCAAAGGCAGAGGAATTGCCAGAACGGTGCAAGGGTGTCATAGCTACTTGATGACCTCATAGACAAGGACTTCAGGTTGGATGTCGATCTCCCTGTAAAGTTCTAGTAGCTCTCCCCAGGTATCTACTGTCTTGACCATCGTAGTGTCATACTTGAGCCACTTGTCGTCCTGGTCACGAGCAAAGCAGACATAACCATGCTCAACGTAGCANATAAAACATGGTTGAGGAATGGTATGCCGATNTAGCCCTTATCTCTAGCCATGGTACTTCTCCAATGCTTAATCAATGATATGTTCCAATTTAAAGTTCAGCAATATATCGAGATGACAGTCCATAGAAGTAATAATCCACTGTGTTGCTTCCGCTCCCTAGATTCGCTATATGGACTATATATTCCTGCTCAATTCTAATCCCCTTGCCCGCCCTCTG]

[+] EMBL CA762269             [TTTTTTTTTTTTAAGGACAATTTCAACATTTCATAGAATTTCCCAAGGAGCAAGGGAAAAATTCAATATTTTCTTTCAACATATTTGCCAATCTTGTGTCAGGGAAAAGATCGATGAAAAAAGCGGTGTGTGATTGGCAGCAGTAACGAAACTTGACGACGGTGTATATGTACTAGTATATACTGTATACAAGTTCTCTGTATGTGCAAAGGCAGAGGAATTGCCAGAACGGTGCAAGGGTGTCATAGCTACTTGATGACCTCATAGACAAGGACTTCAGGTTGGATGTCGATCTCCCTGTAAAGTTCTAGTAGCTCTCCCCAGGTATCTACTGTCTTGACCATCGTAGTGTCATACTTGAGCCACTTGTCGTCCTGGTCACGAGCAAAGCAGACATAACCATGCTCAACGTAGCANATAAAACATGGTTGAGGAATGGTATGCCGATNTAGCCCTTATCTCTAGCCATGGTACTTCTCCAATGCTTAATCAATGATATGTTCCAATTTAAAGTTCAGCAATATATCGAGATGACAGTCCATAGAAGTAATAATCCACTGTGTTGCTTCCGCTCCCTAGATTCGCTATATGGACTATATATTCCTGCTCAATTCTAATCCCCTTGCCCGCCCTCTG]




>consensus_2387#0
TTTTTTTTTTTTAAGGACAATTTCAACATTTCATAGAATTTCCCAAGGAGCAAGGGAAAA
ATTCAATATTTTCTTTCAACATATTTGCCAATCTTGTGTCAGGGAAAAGATCGATGAAAA
AAGCGGTGTGTGATTGGCAGCAGTAACGAAACTTGACGACGGTGTATATGTACTAGTATA
TACTGTATACAAGTTCTCTGTATGTGCAAAGGCAGAGGAATTGCCAGAACGGTGCAAGGG
TGTCATAGCTACTTGATGACCTCATAGACAAGGACTTCAGGTTGGATGTCGATCTCCCTG
TAAAGTTCTAGTAGCTCTCCCCAGGTATCTACTGTCTTGACCATCGTAGTGTCATACTTG
AGCCACTTGTCGTCCTGGTCACGAGCAAAGCAGACATAACCATGCTCAACGTAGCANATA
AAACATGGTTGAGGAATGGTATGCCGATNTAGCCCTTATCTCTAGCCATGGTACTTCTCC
AATGCTTAATCAATGATATGTTCCAATTTAAAGTTCAGCAATATATCGAGATGACAGTCC
ATAGAAGTAATAATCCACTGTGTTGCTTCCGCTCCCTAGATTCGCTATATGGACTATATA
TTCCTGCTCAATTCTAATCCCCTTGCCCGCCCTCTG

consensusID : consensus_2387#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [GATGACCTNAATAGACAAGGNCTTCAGGTTGGATGTTGACCACCCTGTAAAGTTCTAGTAGCNCNCCCCAGGTATCTACTGCCTTGACCGTCGTAGTGTCATACTTGAGCCACTTGACGTCCTGGTCACGAGCAANGCAGACATAACCATGCTCAACGTAGCAAATCTGCGTGGTTGGACAGATAGCAATGTTAAGCTAACTGTATGCACATGAAGTAGATTTTCAATACATGATTAGGCTTCTATAAGCAGATAATCCCACAACCAGTCTAATGACAGGATGTGTTGAAANAAAGTAGCAACATAATGTGTAGAGATTACAAAACATGGTTGAGGAATGGTATGCCGATGTAGCCGTTATCT]

[-] EMBL OSC17241             [GATGACCTNAATAGACAAGGNCTTCAGGTTGGATGTTGACCACCCTGTAAAGTTCTAGTAGCNCNCCCCAGGTATCTACTGCCTTGACCGTCGTAGTGTCATACTTGAGCCACTTGACGTCCTGGTCACGAGCAANGCAGACATAACCATGCTCAACGTAGCAAATCTGCGTGGTTGGACAGATAGCAATGTTAAGCTAACTGTATGCACATGAAGTAGATTTTCAATACATGATTAGGCTTCTATAAGCAGATAATCCCACAACCAGTCTAATGACAGGATGTGTTGAAANAAAGTAGCAACATAATGTGTAGAGATTACAAAACATGGTTGAGGAATGGTATGCCGATGTAGCCGTTATCT]




>consensus_2387#1
GATGACCTNAATAGACAAGGNCTTCAGGTTGGATGTTGACCACCCTGTAAAGTTCTAGTA
GCNCNCCCCAGGTATCTACTGCCTTGACCGTCGTAGTGTCATACTTGAGCCACTTGACGT
CCTGGTCACGAGCAANGCAGACATAACCATGCTCAACGTAGCAAATCTGCGTGGTTGGAC
AGATAGCAATGTTAAGCTAACTGTATGCACATGAAGTAGATTTTCAATACATGATTAGGC
TTCTATAAGCAGATAATCCCACAACCAGTCTAATGACAGGATGTGTTGAAANAAAGTAGC
AACATAATGTGTAGAGATTACAAAACATGGTTGAGGAATGGTATGCCGATGTAGCCGTTA
TCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2387#0      TTTTTTTTTTTTAAGGACAATTTCAACATTTCATAGAATTTCCCAAGGAGCAAGGGAAAA 60
consensus_2387#1      ------------------------------------------------------------
                                                                                  

consensus_2387#0      ATTCAATATTTTCTTTCAACATATTTGCCAATCTTGTGTCAGGGAAAAGATCGATGAAAA 120
consensus_2387#1      ------------------------------------------------------------
                                                                                  

consensus_2387#0      AAGCGGTGTGTGATTGGCAGCAGTAACGAAACTTGACGACGGTGTATATGTACTAGTATA 180
consensus_2387#1      ------------------------------------------------------------
                                                                                  

consensus_2387#0      TACTGTATACAAGTTCTCTGTATGTGCAAAGGCAGAGGAATTGCCAGAACGGTGCAAGGG 240
consensus_2387#1      ------------------------------------------------------------
                                                                                  

consensus_2387#0      TGTCATAGCTACTTGATGACCTCA-TAGACAAGGACTTCAGGTTGGATGTCGATCTCCCT 299
consensus_2387#1      --------------GATGACCTNAATAGACAAGGNCTTCAGGTTGGATGTTGACCACCCT 46
                                    ******** * ********* *************** ** * ****

consensus_2387#0      GTAAAGTTCTAGTAGCTCTCCCCAGGTATCTACTGTCTTGACCATCGTAGTGTCATACTT 359
consensus_2387#1      GTAAAGTTCTAGTAGCNCNCCCCAGGTATCTACTGCCTTGACCGTCGTAGTGTCATACTT 106
                      **************** * **************** ******* ****************

consensus_2387#0      GAGCCACTTGTCGTCCTGGTCACGAGCAAAGCAGACATAACCATGCTCAACGTAGCANAT 419
consensus_2387#1      GAGCCACTTGACGTCCTGGTCACGAGCAANGCAGACATAACCATGCTCAACGTAGCAAAT 166
                      ********** ****************** *************************** **

consensus_2387#0      AAAACATGGTTGAGGA-ATGGTA-TGCCGATNTAGCCCTTATCTCTAGCCATGGTACTTC 477
consensus_2387#1      CTG-CGTGGTTGGACAGATAGCAATGTTAAGCTAAC---TGTATGCACATGAAGTAGATT 222
                          * ******   * ** * * **   *  ** *   * * *  *      ***  * 

consensus_2387#0      TCCAATGCTTAATCAATGATATGTTCCAATTTAAAGTTCAGCAATATATCGAGATGACAG 537
consensus_2387#1      TTCAATACATGATTA--GGCTTCTATAAGCAGATAATCCCACAACCAGTCTA-ATGACAG 279
                      * **** * * ** *  *   * *   *    * * * *  ***    ** * *******

consensus_2387#0      --TCCATAGAAGTAATAATCCACTGTGTTGCTTCC-GCTCCCTAGATTCGCTATATGGAC 594
consensus_2387#1      GATGTGTTGAAANAAAGTAGCAACATAATGTGTAGAGATTACAAAACATGGTTGAGGAAT 339
                        *   * ***  **     **   *  **  *   * *  * * *   * *  * * * 

consensus_2387#0      TATATATTCCTGCTCAATTCTAATCCCCTTGCCCGCCCTCTG 636
consensus_2387#1      GGTATGCCGATG--TAGCCGTTATCT---------------- 363
                        ***     **   *    * ***