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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 936 fasta sequence
[GCGAGGGGGCGGGCGTGCGTGCGTCGTCGATCGTCGACAGTCGTCTCTTGCCACCATGTCTTTCACCGGCACGCAGGACAAGTGCACGGCGTGCGACAAGACCGTCCACTTCATCGACCTCCTCACCGCCGACGGCGTCCCGTACCACAAGACCTGCTTCAAGTGCAGCCACTGCAAAGGGATTCTCTCGATGTGCAGCTACTCGTCCATGGACGGCGTCCTCTACTGCAAGACCCACTTTGAGCAGCTCTTCAAGGAGACGGGGAGCTTCTCCAAGAAGTTCGCGCCAGGTTGCAGATCTACAGACAAGGAACTGGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAGTGTGCAGCCTGCCAGAAAACAGTGTACCCACTAGAAAAGCTAACTTTGGAAGGTGAGTCATACCACAAGAGCTGCTTCAAGTGCTCTCATGGAGGCTGCATCCTGACCACCTCCTCCTACGCGGCGCTCAACGGGGTGTTGTACTGCAAGATACACTTCGGGCAGCTGTTCATGGAGAAAGGGAGCTACAATCACATGAAGAAGAAGAGCGAGTCCCAGGAGGTGTTGCCGGAAGTGGTGCCCGAAGAGCAACCGGCGCCGCCGCCGCCAGACGAAAATAGAGAGGACAACTAGGACTACGAAACGAGCCAAACACATACGGTGATACACGGATCTCTGGAGTTTCTGTTTACTAATTTTGCAACGGTTGTTTATTCCCTCCTCTTTTTTTGCTCGTGATCCTCCCTGTGTGCGAGTAGTCTGTCAAGCTGTAAGTGTACGCCTTCGTTTCATAGGAGGCTCATGAAAATGGCAGGTTGACAACAATGGCATGCGACTGACTGCCAGCCTCCTGTGAAAAATCTGTAATTTCTGTAACTACTACGAATTGATCATACTTCCTAGCAACC]
[+] EMBL AK069907 [GCGAGGGGGCGGGCGTGCGTGCGTCGTCGATCGTCGACAGTCGTCTCTTGCCACCATGTCTTTCACCGGCACGCAGGACAAGTGCACGGCGTGCGACAAGACCGTCCACTTCATCGACCTCCTCACCGCCGACGGCGTCCCGTACCACAAGACCTGCTTCAAGTGCAGCCACTGCAAAGGGATTCTCTCGATGTGCAGCTACTCGTCCATGGACGGCGTCCTCTACTGCAAGACCCACTTTGAGCAGCTCTTCAAGGAGACGGGGAGCTTCTCCAAGAAGTTCGCGCCAGGTTGCAGATCTACAGACAAGGAACTGGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCAGGATAAGTGTGCAGCCTGCCAGAAAACAGTGTACCCACTAGAAAAGCTAACTTTGGAAGGTGAGTCATACCACAAGAGCTGCTTCAAGTGCTCTCATGGAGGCTGCATCCTGACCACCTCCTCCTACGCGGCGCTCAACGGGGTGTTGTACTGCAAGATACACTTCGGGCAGCTGTTCATGGAGAAAGGGAGCTACAATCACATGAAGAAGAAGAGCGAGTCCCAGGAGGTGTTGCCGGAAGTGGTGCCCGAAGAGCAACCGGCGCCGCCGCCGCCAGACGAAAATAGAGAGGACAACTAGGACTACGAAACGAGCCAAACACATACGGTGATACACGGATCTCTGGAGTTTCTGTTTACTAATTTTGCAACGGTTGTTTATTCCCTCCTCTTTTTTTGCTCGTGATCCTCCCTGTGTGCGAGTAGTCTGTCAAGCTGTAAGTGTACGCCTTCGTTTCATAGGAGGCTCATGAAAATGGCAGGTTGACAACAATGGCATGCGACTGACTGCCAGCCTCCTGTGAAAAATCTGTAATTTCTGTAACTACTACGAATTGATCATACTTCCTAGCAACC]
consensusID : consensus_2390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CCTTTACTGCAAAGACCCCCCTGAGCAGCTCTTAAAGGAGACGGGGAGCTTCTCCAAGAAGTTCGCGCCAGGTTTCAGATTTACAGACAAGGAACTGGCAAGGGCCCCAAGCCAGATATGTTTAGCGTTTTCTGGAACTCCGGATAAGTGTGCAGCCTGCCAGAAAACAGTGTTCCCCCTAGAAAAGCTAACTTTGGAAGGTGAGTCATACCCCCAAAGCTGGTTCAAGTGCTTTCATGGAGGGTGCATCCTGACCCCCTCCTCCTACGCGGCGCTTAACGGGGTGTTGTACTGCAAGATACACTTTGGGCAGCTGTTCATGGAGAAAAGGAGCTTCAATCCCATGAAGAAGAAAAGCGAGTCCCCGGAGGTGTTTCCGGAAATGGTGCCCGAAAAGCAACCGGGGCCGCCGCCGCCAGACGAAAATAGAGAGGGCAACTAGGGCTTCGAAACGAGCCCAACCCATACGGTGATACCCGGATTTTTGGAGGTTCTGTTTACTAATTTTGCAACGGGTGGTTATTCCCTCCTCTTTTTTTGCTCGTGATCCCCCCCGTGTGCGAGTAGTCTGTCAAACTGTAAGTGTACGCCTTCGTTTCATAGGAGGCTCATGAAAATGGCAGGTTGACAACAATGGCATGCGGCTGAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762291 [CCTTTACTGCAAAGACCCCCCTGAGCAGCTCTTAAAGGAGACGGGGAGCTTCTCCAAGAAGTTCGCGCCAGGTTTCAGATTTACAGACAAGGAACTGGCAAGGGCCCCAAGCCAGATATGTTTAGCGTTTTCTGGAACTCCGGATAAGTGTGCAGCCTGCCAGAAAACAGTGTTCCCCCTAGAAAAGCTAACTTTGGAAGGTGAGTCATACCCCCAAAGCTGGTTCAAGTGCTTTCATGGAGGGTGCATCCTGACCCCCTCCTCCTACGCGGCGCTTAACGGGGTGTTGTACTGCAAGATACACTTTGGGCAGCTGTTCATGGAGAAAAGGAGCTTCAATCCCATGAAGAAGAAAAGCGAGTCCCCGGAGGTGTTTCCGGAAATGGTGCCCGAAAAGCAACCGGGGCCGCCGCCGCCAGACGAAAATAGAGAGGGCAACTAGGGCTTCGAAACGAGCCCAACCCATACGGTGATACCCGGATTTTTGGAGGTTCTGTTTACTAATTTTGCAACGGGTGGTTATTCCCTCCTCTTTTTTTGCTCGTGATCCCCCCCGTGTGCGAGTAGTCTGTCAAACTGTAAGTGTACGCCTTCGTTTCATAGGAGGCTCATGAAAATGGCAGGTTGACAACAATGGCATGCGGCTGAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2390#0 GCGAGGGGGCGGGCGTGCGTGCGTCGTCGATCGTCGACAGTCGTCTCTTGCCACCATGTC 60
consensus_2390#1 ------------------------------------------------------------
consensus_2390#0 TTTCACCGGCACGCAGGACAAGTGCACGGCGTGCGACAAGACCGTCCACTTCATCGACCT 120
consensus_2390#1 ------------------------------------------------------------
consensus_2390#0 CCTCACCGCCGACGGCGTCCCGTACCACAAGACCTGCTTCAAGTGCAGCCACTGCAAAGG 180
consensus_2390#1 ------------------------------------------------------------
consensus_2390#0 GATTCTCTCGATGTGCAGCTACTCGTCCATGGACGGCGTCCTCTACTGCAAGACCCACTT 240
consensus_2390#1 ---------------------------------------CCTTTACTGCAAAGACCCCCC 21
*** ******** ** *
consensus_2390#0 TGAGCAGCTCTTCAAGGAGACGGGGAGCTTCTCCAAGAAGTTCGCGCCAGGTTGCAGATC 300
consensus_2390#1 TGAGCAGCTCTTAAAGGAGACGGGGAGCTTCTCCAAGAAGTTCGCGCCAGGTTTCAGATT 81
************ **************************************** *****
consensus_2390#0 TACAGACAAGGAACTGGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGAACTCA 360
consensus_2390#1 TACAGACAAGGAACTGGCAAGGGCCCCAAGCCAGATATGTTTAGCGTTTTCTGGAACTCC 141
******************************* ********* *****************
consensus_2390#0 GGATAAGTGTGCAGCCTGCCAGAAAACAGTGTACCCACTAGAAAAGCTAACTTTGGAAGG 420
consensus_2390#1 GGATAAGTGTGCAGCCTGCCAGAAAACAGTGTTCCCCCTAGAAAAGCTAACTTTGGAAGG 201
******************************** *** ***********************
consensus_2390#0 TGAGTCATACCACAAGAGCTGCTTCAAGTGCTCTCATGGAGGCTGCATCCTGACCACCTC 480
consensus_2390#1 TGAGTCATACCCCCAAAGCTGGTTCAAGTGCTTTCATGGAGGGTGCATCCTGACCCCCTC 261
*********** * * ***** ********** ********* ************ ****
consensus_2390#0 CTCCTACGCGGCGCTCAACGGGGTGTTGTACTGCAAGATACACTTCGGGCAGCTGTTCAT 540
consensus_2390#1 CTCCTACGCGGCGCTTAACGGGGTGTTGTACTGCAAGATACACTTTGGGCAGCTGTTCAT 321
*************** ***************************** **************
consensus_2390#0 GGAGAAAGGGAGCTACAATCACATGAAGAAGAAGAGCGAGTCCCAGGAGGTGTTGCCGGA 600
consensus_2390#1 GGAGAAAAGGAGCTTCAATCCCATGAAGAAGAAAAGCGAGTCCCCGGAGGTGTTTCCGGA 381
******* ****** ***** ************ ********** ********* *****
consensus_2390#0 AGTGGTGCCCGAAGAGCAACCGGCGCCGCCGCCGCCAGACGAAAATAGAGAGGACAACTA 660
consensus_2390#1 AATGGTGCCCGAAAAGCAACCGGGGCCGCCGCCGCCAGACGAAAATAGAGAGGGCAACTA 441
* *********** ********* ***************************** ******
consensus_2390#0 GGACTACGAAACGAGCCAAACACATACGGTGATACACGGATCTCTGGAGTTTCTGTTTAC 720
consensus_2390#1 GGGCTTCGAAACGAGCCCAACCCATACGGTGATACCCGGATTTTTGGAGGTTCTGTTTAC 501
** ** *********** *** ************* ***** * ***** **********
consensus_2390#0 TAATTTTGCAACGGTTGTTTATTCCCTCCTCTTTTTTTGCTCGTGATCCTCCCTGTGTGC 780
consensus_2390#1 TAATTTTGCAACGGGTGGTTATTCCCTCCTCTTTTTTTGCTCGTGATCCCCCCCGTGTGC 561
************** ** ******************************* *** ******
consensus_2390#0 GAGTAGTCTGTCAAGCTGTAAGTGTACGCCTTCGTTTCATAGGAGGCTCATGAAAATGGC 840
consensus_2390#1 GAGTAGTCTGTCAAACTGTAAGTGTACGCCTTCGTTTCATAGGAGGCTCATGAAAATGGC 621
************** *********************************************
consensus_2390#0 AGGTTGACAACAATGGCATGCGACTGACTGCCAGCCTCCTGTGAAAAATCTGTAATTTCT 900
consensus_2390#1 AGGTTGACAACAATGGCATGCGGCTGAAAAAAAAAAAAAAAAAAAAA------------- 668
********************** **** * ****
consensus_2390#0 GTAACTACTACGAATTGATCATACTTCCTAGCAACC 936
consensus_2390#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||