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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1169 fasta sequence
[AAGCCAGATTCATGTCATCGTGTGTAGAAACTAGAAACTGGAGTACAAGTGAAGAAAACAAAACGAAAATTTTCTGATCCCCGCCTCGTCCGAAGCCCTAAACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGGTATTCCTTATTTCTTGCTCTAGTTATTGACCGGCTCCACCAATACATCAGAGAGCTACGTGGGCTAAAGAAGAATGTTGAGGCCGTAACTAAGCATAATAAAATGTTGGAGGAAGCAAAACATGGAAGATCTGAGGAGACAAAGAAATACCAAGAAGAGATTGGTGCTCTCAATGAGGATATGAAGAAACTGAAGCTACAAGTCCAAGAAAAGACAGAGGAAGTCCACGTTGCTGAGGACAAGGCTCTTGCTATTCGGAAACAATCTGAAAGCCTGCTGCTTGAGTATGACCGTTTGCTGGAGGACAACCAGCATCTCCGGGAGCAGCTGCAGTCAATTGACCACAGGCTCTCCAGTCCAAAATAAGTTCAAGTGTAATATTTTTTTTTCCTATGGGATTGGAGAACCTAGTCAATATATTGCTGCAGAAAATTTTCCATCACAGTTTTGGAAAAAAAAAGTTTACTTTTATCGTAGAATACCAAGAAATTCCTGGCGGTAAAATCATTTGGATTTAATGCTCATATAATATGCTTTTAGCAGTATTCTCCCTTATCAGTTTTATCATCTTTGCTTAATTAGCTTTTGTAATATATACCCGTAGGTAAGTTCGAGCATCATATTGTCAAGCACTTTACAATTTTTCCATGTGTGGTTATTTTAATAATGTC]
[+] EMBL AK070852 [AAGCCAGATTCATGTCATCGTGTGTAGAAACTAGAAACTGGAGTACAAGTGAAGAAAACAAAACGAAAATTTTCTGATCCCCGCCTCGTCCGAAGCCCTAAACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGGTATTCCTTATTTCTTGCTCTAGTTATTGACCGGCTCCACCAATACATCAGAGAGCTACGTGGGCTAAAGAAGAATGTTGAGGCCGTAACTAAGCATAATAAAATGTTGGAGGAAGCAAAACATGGAAGATCTGAGGAGACAAAGAAATACCAAGAAGAGATTGGTGCTCTCAATGAGGATATGAAGAAACTGAAGCTACAAGTCCAAGAAAAGACAGAGGAAGTCCACGTTGCTGAGGACAAGGCTCTTGCTATTCGGAAACAATCTGAAAGCCTGCTGCTTGAGTATGACCGTTTGCTGGAGGACAACCAGCATCTCCGGGAGCAGCTGCAGTCAATTGACCACAGGCTCTCCAGTCCAAAATAAGTTCAAGTGTAATATTTTTTTTTCCTATGGGATTGGAGAACCTAGTCAATATATTGCTGCAGAAAATTTTCCATCACAGTTTTGGAAAAAAAAAGTTTACTTTTATCGTAGAATACCAAGAAATTCCTGGCGGTAAAATCATTTGGATTTAATGCTCATATAATATGCTTTTAGCAGTATTCTCCCTTATCAGTTTTATCATCTTTGCTTAATTAGCTTTTGTAATATATACCCGTAGGTAAGTTCGAGCATCATATTGTCAAGCACTTTACAATTTTTCCATGTGTGGTTATTTTAATAATGTC]
consensusID : consensus_2418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1093 fasta sequence
[AACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGTAGGTGTTGGCTACTCGATCAAATCGGTTCTCGTGTGCGCCGGCCCGATGCGCTTTCGTCTTGAGTTGGGGATACCCTTATTGCTTGTCCTTTCGTACTAAACAGTAGTCGTATCGTTTTTCACAAATGTAGAAATCCATTTCGCACAAACCTTCAGTCCGATCGCTACTGAATGACGCGCTTTCCTTAGGTGTCTGAAAATGTTAGAAGGAATAAATGAATAAAATGATGGCTTAGGCTATAGAGAGTCGTAGCTGGTCTTGGAGCTGATTCCCATAATCATGCCTCAGGGATGAATGCACAAACAGGAGTGAACAGGTGAAATAATCTTATGGTCTAATTTAGGCATTTTCTTGTACTAACGATACATCAAAAGTTCAAGAAAAGTCTCAAGTTGTTCGACTGGAGCAAACTCAGTTCCTTGAGAGGAATTAAACTCAGCCAGTTGGGCTTCTTGCCGCCTGACCATCTGAGCTGTTTCCTGTTTCTGTGTTTTGATTTCATATTTATCTAAAAAGTATACTTTTCCACCACTGAAAAGATTGTTATGAGCTCATCCCATGGACTGTAGCAGTCAACATCTGATGAGTGTTCTGAGTAAGGACAATAAAAATGTGCAGTGTGAACTTGGGGGTGGAAAATACAACAATGTTGCTTCTTGCTTGTCTACACTCATCTTTTAGTCTAAGGAAAAAA]
[+] EMBL AK067188 [AACCCCCAAACGCCGCCTCCTCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGCAAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTCCTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGCCGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCCACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGCGGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTCGAGGCATCCCTCATGGGTAGGTGTTGGCTACTCGATCAAATCGGTTCTCGTGTGCGCCGGCCCGATGCGCTTTCGTCTTGAGTTGGGGATACCCTTATTGCTTGTCCTTTCGTACTAAACAGTAGTCGTATCGTTTTTCACAAATGTAGAAATCCATTTCGCACAAACCTTCAGTCCGATCGCTACTGAATGACGCGCTTTCCTTAGGTGTCTGAAAATGTTAGAAGGAATAAATGAATAAAATGATGGCTTAGGCTATAGAGAGTCGTAGCTGGTCTTGGAGCTGATTCCCATAATCATGCCTCAGGGATGAATGCACAAACAGGAGTGAACAGGTGAAATAATCTTATGGTCTAATTTAGGCATTTTCTTGTACTAACGATACATCAAAAGTTCAAGAAAAGTCTCAAGTTGTTCGACTGGAGCAAACTCAGTTCCTTGAGAGGAATTAAACTCAGCCAGTTGGGCTTCTTGCCGCCTGACCATCTGAGCTGTTTCCTGTTTCTGTGTTTTGATTTCATATTTATCTAAAAAGTATACTTTTCCACCACTGAAAAGATTGTTATGAGCTCATCCCATGGACTGTAGCAGTCAACATCTGATGAGTGTTCTGAGTAAGGACAATAAAAATGTGCAGTGTGAACTTGGGGGTGGAAAATACAACAATGTTGCTTCTTGCTTGTCTACACTCATCTTTTAGTCTAAGGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2418#0 AAGCCAGATTCATGTCATCGTGTGTAGAAACTAGAAACTGGAGTACAAGTGAAGAAAACA 60
consensus_2418#1 ------------------------------------------------------------
consensus_2418#0 AAACGAAAATTTTCTGATCCCCGCCTCGTCCGAAGCCCTAAACCCCCAAACGCCGCCTCC 120
consensus_2418#1 ----------------------------------------AACCCCCAAACGCCGCCTCC 20
********************
consensus_2418#0 TCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGC 180
consensus_2418#1 TCCTCCTCCTCCTTCCTCGATTCCATCGAATCGAACCACGAAACCAATCCACGCGAGGGC 80
************************************************************
consensus_2418#0 AAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTC 240
consensus_2418#1 AAAATGATCCAGCTGCTGTTCCTGGTGCTCGTGGCGGAGGCGGCCGTGGCGGCGGTGCTC 140
************************************************************
consensus_2418#0 CTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGC 300
consensus_2418#1 CTCTTCAAGACGCCGCTGCGGAAGCTCGCCGTGATGGGGATCGACCGCCTCAAGCGCGGC 200
************************************************************
consensus_2418#0 CGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCC 360
consensus_2418#1 CGCCGCGCGCCCGTCGCCGTCAAGACCGTCGCCGGCGTCGTCCTCGCCCTGCTCGCCTCC 260
************************************************************
consensus_2418#0 ACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGC 420
consensus_2418#1 ACGCTCTACAGCATGGCCGAGATCAGCGGCCGCGCCGGGGGAGACCCCGAATCCGGCGGC 320
************************************************************
consensus_2418#0 GGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTC 480
consensus_2418#1 GGCGGCGGCGGCGCCTCCCTCTCGCCCACCGACCAGGTCCTCTTCTCGCGGCACCTCCTC 380
************************************************************
consensus_2418#0 GAGGCATCCCTCATGGGGTATTCCTTATTTCTTGCTCTAGTTATTGACCGGCTCCACCAA 540
consensus_2418#1 GAGGCATCCCTCATGGGTAGGTGTTGGCTACTCGATCAAATCGGTTCTCGTGTGCGCCGG 440
***************** * * * ** * ** * * * ** * * **
consensus_2418#0 TACATCAGAGAGCTACGTGGGCTAAAGAAGAATGTTGAGGCCGTAACTAAGCATAATAAA 600
consensus_2418#1 CCCGATGCGCTTTCGTCTTGAGTTGGGGATACCCTTATTGCT-TGTCCTTTCGTACTAAA 499
* * * * * * * ** ** * * * ** ****
consensus_2418#0 ATGTTGGAGGAAG------CA-AAACATGGAAGATCTGAGGAGACAAAGAAATACCAAGA 653
consensus_2418#1 CAGTAGTCGTATCGTTTTTCACAAATGTAGAAATCCATTTCGCACAAACCTTCAGTCCGA 559
** * * * ** *** * *** * ***** * **
consensus_2418#0 -----AGAGATTG--GTGCTCTCAATGAGGATATGAAGAAACT-GAAGCTACAAGTCCAA 705
consensus_2418#1 TCGCTACTGAATGACGCGCTTTCCTTAGGTGTCTGAAAATGTTAGAAGGAATAAATGAAT 619
* ** ** * *** ** * * * **** * * **** * ** * *
consensus_2418#0 GAAAAGACAGAGGAAGTCCACGTTGCTGAGGACAAGGCTC----TTGCTATTCGGAAACA 761
consensus_2418#1 AAAATGATGGCTTAGGCTATAGAGAGTCGTAGCTGGTCTTGGAGCTGATTCCCATAATCA 679
*** ** * * * * * * * ** ** * * ** **
consensus_2418#0 -ATCTGAAAGCCTGCTGCTTGAGTATGACCGTTT-GCTGGAGGACAACCAGCATCTCCGG 819
consensus_2418#1 TGCCTCAGGGATGAATGCACAAACAGGAGTGAACAGGTGAAATAATCTTATGGTCTAATT 739
** * * *** * * ** * * ** * * * ***
consensus_2418#0 GAGCAGCTGCAGTCAATTGACCACAGGCTCTCCAGTCCAAAATAAGT----------TCA 869
consensus_2418#1 TAGGCATTTTCTTGTACTAACGATACA-TCAAAAGTTCAAGAAAAGTCTCAAGTTGTTCG 798
** * * * * ** * * ** *** *** * **** **
consensus_2418#0 AGTGTAATATTTTTTTTTCCTATGGGATTGGAGAACCTAGTCAATATA--TTGCTGCAGA 927
consensus_2418#1 ACTGGAGCAAACTCAGTTCCTTGAGAGGAATTAAACTCAGCCAGTTGGGCTTCTTGCCGC 858
* ** * * * ***** * *** ** ** * ** *** *
consensus_2418#0 AAATTTTCCATCACAGTTTTGGAAAAAAAAAGTTTACTTTTATCGTAGAATACCAAGAAA 987
consensus_2418#1 CTGACCATCTGAGCTGTTTCCTGTTTCTGTGTTTTGATTTCATATTTATCTAAAAAGTAT 918
* * **** *** *** ** * ** *** *
consensus_2418#0 ---TTCCTGGCGGTAAAATCATTTGGATTTAATGCTCATATAATATGCTTTTAGCAGTAT 1044
consensus_2418#1 ACTTTTCCACCACTGAAAAGATT---GTTATGAGCTCATCCCATG-GACTGTAGCAGTCA 974
** * * * *** *** ** ****** ** * * *******
consensus_2418#0 TCTCCCTTATCAGTTTTATCATCTTTGCTTAATTAGCTTTTGTAATATATACCCGTAGGT 1104
consensus_2418#1 ACATC-TGATGAGTGTTCTGAG-TAAGGACAATAAAAATGTGCAGTGTGAACTTGGGGGT 1032
* * * ** *** ** * * * * *** * * ** * * * ** * ***
consensus_2418#0 AAGTTCGAGCATCATATTGTCAAGCACTTTACAATTTTTCCATGTGTGGTTATTTTAATA 1164
consensus_2418#1 GGAAAATACAACAATGTTGCTTCTTGCTTGTCTACACTCATCTTTTAGTCTAAGGAAAAA 1092
* * ** *** *** * * * * * * ** ** *
consensus_2418#0 ATGTC 1169
consensus_2418#1 A---- 1093
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||