These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [TCTTTCCCTAGGACCTACCCCTCCCCTACCCTCTTGAGCTTTCTCAAATAAAAAAAAAGGAACACCTGAATTTTTTTGGTGATTCAAAGAGAAAAAGACAAAGATTTGATGGCATCTTCGAGCTCTACCATGATGGCAAGGCCCGGCGCTGTGAAGAATATTGAAAGCTGGGACGAGTTTACAAAGCATTTTGTGAAATCAGAGGACAAGCTGGTGGTGCTGGTATTCATGGCGCCGTGGTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAGCGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCTGCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGCCCGGGCGGTGGCTCGCGTCGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTCTTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCATGATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTGTATTTGAGAC] [+] EMBL CF310697 [TCTTTCCCTAGGACCTACCCCTCCCCTACCCTCTTGAGCTTTCTCAAATAAAAAAAAAGGAACACCTGAATTTTTTTGGTGATTCAAAGAGAAAAAGACAAAGATTTGATGGCATCTTCGAGCTCTACCATGATGGCAAGGCCCGGCGCTGTGAAGAATATTGAAAGCTGGGACGAGTTTACAAAGCATTTTGTGAAATCAGAGGACAAGCTGGTGGTGCTGGTATTCATGGCGCCGTGGTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAGCGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCTGCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGCCCGGGCGGTGGCTCGCGTCGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTCTTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCATGATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTGTATTTGAGAC] consensusID : consensus_2424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [GAGGACAAGCTGGTAAACATATATACATATATAATCCAATCCAATTCAGATTTACATGTGATGTGATCGATCGACGCATTCATGCATGCATGAAATTAATATATTGAAATATGAATGATCAATCAGGTGGTGCTGGTATTCATGGCGCCGTGGTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAGCGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCTGCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGGCACCGGGCGGTGGCTCGCGTCGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTCTTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCATGATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTGTATTTGAGACATATTCAACCTTGTTTCGAGAAAAAAAAATGGAGATGAAAAAAAA] [+] EMBL AK109214 [GAGGACAAGCTGGTAAACATATATACATATATAATCCAATCCAATTCAGATTTACATGTGATGTGATCGATCGACGCATTCATGCATGCATGAAATTAATATATTGAAATATGAATGATCAATCAGGTGGTGCTGGTATTCATGGCGCCGTGGTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAGCGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCTGCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGGCACCGGGCGGTGGCTCGCGTCGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTCTTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCATGATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTGTATTTGAGACATATTCAACCTTGTTTCGAGAAAAAAAAATGGAGATGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2424#0 TCTTTCCCTAGGACCTACCCCTCCCCTACCCTCTTGAGCTTTCTCAAATAAAAAAAAAGG 60 consensus_2424#1 ------------------------------------------------------------ consensus_2424#0 AACACCTGAATTTTTTTGGTGATTCAAAGAGAAAAAGACAAAGATTTGATGGCATCTTCG 120 consensus_2424#1 -------------------------GAGGACAAGCTGGTAAACATATATACATATAT--- 32 * ** ** * *** ** * ** * consensus_2424#0 AGCTCTACCATGATGGCAAGGCCCGGCGCTGTGAAGAAT-ATTGAAAGCTGGGACGAGTT 179 consensus_2424#1 AATCCAATCCAATTCAGATTTACATGTGATGTGATCGATCGACGCATTCATGCATGCATG 92 * * * * * * * * * ***** ** * * * * * * * consensus_2424#0 TACAAAGCATTTTGTGAAATCAGAGGACAAGCTGGTGGTGCTGGTATTCATGGCGCCGTG 239 consensus_2424#1 AAATTAATATATTGAAATATGAATGATCAATCAGGTGGTGCTGGTATTCATGGCGCCGTG 152 * * ** *** * ** * * *** * *************************** consensus_2424#0 GTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAG 299 consensus_2424#1 GTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAG 212 ************************************************************ consensus_2424#0 CGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCT 359 consensus_2424#1 CGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCT 272 ************************************************************ consensus_2424#0 GCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGCC--CGGGCGGTGGCTCGCGT 417 consensus_2424#1 GCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGGCACCGGGCGGTGGCTCGCGT 332 *************************************** * ***************** consensus_2424#0 CGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTC 477 consensus_2424#1 CGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTC 392 ************************************************************ consensus_2424#0 TTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCAT 537 consensus_2424#1 TTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCAT 452 ************************************************************ consensus_2424#0 GATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTG 597 consensus_2424#1 GATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTG 512 ************************************************************ consensus_2424#0 TATTTGAGAC--------------------------------------------- 607 consensus_2424#1 TATTTGAGACATATTCAACCTTGTTTCGAGAAAAAAAAATGGAGATGAAAAAAAA 567 ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||