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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1043 fasta sequence
[CATCTCTTCCCCGTTCCCACTTCGCCGGAGCACCACCGCGGCCACGGCGCGCGACGCGAGCACCCACCCCGCCGCCGCCGGCGGCTGACCAACTTCCTCCTCGCCGCCTCCCAATCATCTCGAGATTTTAACTGAACTCCTCTCTTGAACTTCACGAGTTTTTGTTCAACAAAGAACAATGGAAGGCCGGTCCCAGTTGAATCCAGATGCCAGTCCTTTCATACCTTCCTCACTAAGTCTTTTCACATACAATGATTCTAAGAGACAAGCAGAGTCATCCTCGATGAACGATCCTTCTGCTAGAGCTTGCCGTCCTTCCATGTGCGAGGAAAATGATATGGATCCACTTGCTTTGACCAAATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGCAAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATATGCTTCATGGTGATGCCATAATGGGCTTCCCAACATTCCCAGATGTGAAGAAATTTCACGGCAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCTTCAGAAGGGTATGTCACTGACGACTTCTGGTGCGAAATCTGCCTCGGCAATGATTCCAGATAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTCTACCACAAATTAATCTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTTTGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTGTCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTGAGCTTTTGAAAGTGTGCATCGCAGTTTCAGTTTGCTTGTTAGTTGTTACCGAGAGTTGTATAGGTCTTTTGATGTATTCGTCAGTCACTATTATGTACTCTGAACCCAGTGGATTGTGCAGCAGCGGCAGCTCTCGTGTACCCCCTGCGAGTGCTACC]
[+] EMBL AK060142 [CATCTCTTCCCCGTTCCCACTTCGCCGGAGCACCACCGCGGCCACGGCGCGCGACGCGAGCACCCACCCCGCCGCCGCCGGCGGCTGACCAACTTCCTCCTCGCCGCCTCCCAATCATCTCGAGATTTTAACTGAACTCCTCTCTTGAACTTCACGAGTTTTTGTTCAACAAAGAACAATGGAAGGCCGGTCCCAGTTGAATCCAGATGCCAGTCCTTTCATACCTTCCTCACTAAGTCTTTTCACATACAATGATTCTAAGAGACAAGCAGAGTCATCCTCGATGAACGATCCTTCTGCTAGAGCTTGCCGTCCTTCCATGTGCGAGGAAAATGATATGGATCCACTTGCTTTGACCAAATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGCAAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATATGCTTCATGGTGATGCCATAATGGGCTTCCCAACATTCCCAGATGTGAAGAAATTTCACGGCAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCTTCAGAAGGGTATGTCACTGACGACTTCTGGTGCGAAATCTGCCTCGGCAATGATTCCAGATAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTCTACCACAAATTAATCTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTTTGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTGTCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTGAGCTTTTGAAAGTGTGCATCGCAGTTTCAGTTTGCTTGTTAGTTGTTACCGAGAGTTGTATAGGTCTTTTGATGTATTCGTCAGTCACTATTATGTACTCTGAACCCAGTGGATTGTGCAGCAGCGGCAGCTCTCGTGTACCCCCTGCGAGTGCTACC]
consensusID : consensus_243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[AGGGGGACCAAATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGCAAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATATGCTTCATGGTGATGCCATAATGGGCTTCCCACCATTCCCAGATGTGAAGAAATTTCACGGCAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCTTCAGAAGGGTATGTCACTGACGACTTTTGGTGCGAAATCTGCCTCGGCAATGATTCCAGATAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTTTACCACAAATTAATTTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTTTGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTGTCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTAAAAAAAAAAAAAAA]
[-] EMBL CA760631 [AGGGGGACCAAATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGCAAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATATGCTTCATGGTGATGCCATAATGGGCTTCCCACCATTCCCAGATGTGAAGAAATTTCACGGCAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCTTCAGAAGGGTATGTCACTGACGACTTTTGGTGCGAAATCTGCCTCGGCAATGATTCCAGATAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTTTACCACAAATTAATTTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTTTGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTGTCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_243#0 CATCTCTTCCCCGTTCCCACTTCGCCGGAGCACCACCGCGGCCACGGCGCGCGACGCGAG 60
consensus_243#1 ------------------------------------------------------------
consensus_243#0 CACCCACCCCGCCGCCGCCGGCGGCTGACCAACTTCCTCCTCGCCGCCTCCCAATCATCT 120
consensus_243#1 ------------------------------------------------------------
consensus_243#0 CGAGATTTTAACTGAACTCCTCTCTTGAACTTCACGAGTTTTTGTTCAACAAAGAACAAT 180
consensus_243#1 ------------------------------------------------------------
consensus_243#0 GGAAGGCCGGTCCCAGTTGAATCCAGATGCCAGTCCTTTCATACCTTCCTCACTAAGTCT 240
consensus_243#1 ------------------------------------------------------------
consensus_243#0 TTTCACATACAATGATTCTAAGAGACAAGCAGAGTCATCCTCGATGAACGATCCTTCTGC 300
consensus_243#1 ------------------------------------------------------------
consensus_243#0 TAGAGCTTGCCGTCCTTCCATGTGCGAGGAAAATGATATGGATCCACTTGCTTTGACCAA 360
consensus_243#1 -------------------------------------------------AGGGGGACCAA 11
******
consensus_243#0 ATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGC 420
consensus_243#1 ATCTGTCCTTTTAATGTTCCCGAATATCTCTGAGGAATTCATTGATGAGTTACTCCAGGC 71
************************************************************
consensus_243#0 AAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATAT 480
consensus_243#1 AAATGAATTTGACATATGTCTCACGGTTGATATGCTTCATGAGCTGAATTCACAAAATAT 131
************************************************************
consensus_243#0 GCTTCATGGTGATGCCATAATGGGCTTCCCAACATTCCCAGATGTGAAGAAATTTCACGG 540
consensus_243#1 GCTTCATGGTGATGCCATAATGGGCTTCCCACCATTCCCAGATGTGAAGAAATTTCACGG 191
******************************* ****************************
consensus_243#0 CAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCT 600
consensus_243#1 CAACCTAGGCCTACCTGATGGTGATTTGTCTGAAAGCAACAGCAGTCTTGATCAATCTCT 251
************************************************************
consensus_243#0 TCAGAAGGGTATGTCACTGACGACTTCTGGTGCGAAATCTGCCTCGGCAATGATTCCAGA 660
consensus_243#1 TCAGAAGGGTATGTCACTGACGACTTTTGGTGCGAAATCTGCCTCGGCAATGATTCCAGA 311
************************** *********************************
consensus_243#0 TAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTC 720
consensus_243#1 TAACATTTCTCTTCATGATAAACTGGGTGTACAGAAAGACGATAAGCCAGCAATTGCTTT 371
***********************************************************
consensus_243#0 TACCACAAATTAATCTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTT 780
consensus_243#1 TACCACAAATTAATTTGCAATGCATCCTGCTGTAGATTCTGTATTCTTTTACTGCTAGTT 431
************** *********************************************
consensus_243#0 TGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTG 840
consensus_243#1 TGGGTGCCTGACTGAAAGTAGTGCAAAGTGCAGACAGTGCAAAACTGCAAACAATGATTG 491
************************************************************
consensus_243#0 TCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTGAGCTTTTGAAAGTGT 900
consensus_243#1 TCTTCTTAATCCATGTTTGAAGGACTACTTGGTTTTCTGGGTTTAAAAAAAAAAAAAAA- 550
******************************************** * ***
consensus_243#0 GCATCGCAGTTTCAGTTTGCTTGTTAGTTGTTACCGAGAGTTGTATAGGTCTTTTGATGT 960
consensus_243#1 ------------------------------------------------------------
consensus_243#0 ATTCGTCAGTCACTATTATGTACTCTGAACCCAGTGGATTGTGCAGCAGCGGCAGCTCTC 1020
consensus_243#1 ------------------------------------------------------------
consensus_243#0 GTGTACCCCCTGCGAGTGCTACC 1043
consensus_243#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||