These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [TTAGGANTGGCCAATGGANATNCAATTGACCCATCATGTGGAATGTGGAAAGTTAATAACCTCTTTTCAGTGCTCCAGATTATCCACAGTTCCAAGCTTCAGAGGACCGGTACAACAATTGTGGAGCATATATTGTCCTCAATCCTCCAGATTTTTCCACCCCTGTTTTCCATAGCTTTGAAGCTGTAAAACCTCGACCTAAGGCAAATCCCTACTATGATTTTGAAGATGTAATAGACTCAGATGAAGAGTTAAATTTAGGCGCTATGGACGATGGCTCGGCGAGCAGTTGATCACATCTTTTGTCTTGTATCACTGTGTAACTGTATTTAGCATCCCGAACAGGGAAACGCCAACAAGTTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAATTCGTGTCATGTACTCATGTCTGCCAAGTTTTTGTCTGTTGGCTTCTTTTGGGCTAATCTCCCTATGCACATCATTTGTACCTCCAAAAAGAAAAATTATGTCAAGTAAGAGGCCTTGTGTTTGCAGTTCTGAGCTCTTGATGCACGAACTCATCAAGAGGATTTCGACAAAAAAAAAAAAA] [+] EMBL AU100614 [TTAGGANTGGCCAATGGANATNCAATTGACCCATCATGTGGAATGTGGAAAGTTAATAACCTCTTTTCAGTGCTCCAGATTATCCACAGTTCCAAGCTTCAGAGGACCGGTACAACAATTGTGGAGCATATATTGTCCTCAATCCTCCAGATTTTTCCACCCCTGTTTTCCATAGCTTTGAAGCTGTAAAACCTCGACCTAAGGCAAATCCCTACTATGATTTTGAAGATGTAATAGACTCAGATGAAGAGTTAAATTTAGGCGCTATGGACGATGGCTCGGCGAGCAGTTGATCACATCTTTTGTCTTGTATCACTGTGTAACTGTATTTAGCATCCCGAACAGGGAAACGCCAACAAGTTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAATTCGTGTCATGTACTCATGTCTGCCAAGTTTTTGTCTGTTGGCTTCTTTTGGGCTAATCTCCCTATGCACATCATTTGTACCTCCAAAAAGAAAAATTATGTCAAGTAAGAGGCCTTGTGTTTGCAGTTCTGAGCTCTTGATGCACGAACTCATCAAGAGGATTTCGACAAAAAAAAAAAAA] consensusID : consensus_2432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence [TATCACTGTGTAACTGTATTTAGCATCCCGAAAGGGAAGCGCCAACAAGTTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTTTTTTTACGTACCGTAT] [+] EMBL CF318244 [TATCACTGTGTAACTGTATTTAGCATCCCGAAAGGGAAGCGCCAACAAGTTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTTTTTTTACGTACCGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2432#0 TTAGGANTGGCCAATGGANATNCAATTGACCCATCATGTGGAATGTGGAAAGTTAATAAC 60 consensus_2432#1 ------------------------------------------------------------ consensus_2432#0 CTCTTTTCAGTGCTCCAGATTATCCACAGTTCCAAGCTTCAGAGGACCGGTACAACAATT 120 consensus_2432#1 ------------------------------------------------------------ consensus_2432#0 GTGGAGCATATATTGTCCTCAATCCTCCAGATTTTTCCACCCCTGTTTTCCATAGCTTTG 180 consensus_2432#1 ------------------------------------------------------------ consensus_2432#0 AAGCTGTAAAACCTCGACCTAAGGCAAATCCCTACTATGATTTTGAAGATGTAATAGACT 240 consensus_2432#1 ------------------------------------------------------------ consensus_2432#0 CAGATGAAGAGTTAAATTTAGGCGCTATGGACGATGGCTCGGCGAGCAGTTGATCACATC 300 consensus_2432#1 ------------------------------------------------------------ consensus_2432#0 TTTTGTCTTGTATCACTGTGTAACTGTATTTAGCATCCCGAACAGGGAAACGCCAACAAG 360 consensus_2432#1 ----------TATCACTGTGTAACTGTATTTAGCATCCCGAA-AGGGAAGCGCCAACAAG 49 ******************************** ****** ********** consensus_2432#0 TTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAATTCGTGTCATGTACTC 420 consensus_2432#1 TTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAAAAAAAAAAAAAAAAAA 109 ******************************************** * * consensus_2432#0 ATGTCTGCCAAGTTTTTGTCTGTTGGCTTCTTTTGGGCTAATCTCCCTATGCACATCATT 480 consensus_2432#1 AAAAAAAAAAAAAAAAAAAAAAACACTGTCTTTTTT-TTACGTACCGTAT---------- 158 * ** ****** ** ** *** consensus_2432#0 TGTACCTCCAAAAAGAAAAATTATGTCAAGTAAGAGGCCTTGTGTTTGCAGTTCTGAGCT 540 consensus_2432#1 ------------------------------------------------------------ consensus_2432#0 CTTGATGCACGAACTCATCAAGAGGATTTCGACAAAAAAAAAAAAA 586 consensus_2432#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||