cluster # 2432

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Oryza sativa
cluster # 2432 cluster # 2432 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2432#0 length = 586 sequences # 1

consensus_2432#1 length = 158 sequences # 1

consensusID : consensus_2432#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [TTAGGANTGGCCAATGGANATNCAATTGACCCATCATGTGGAATGTGGAAAGTTAATAACCTCTTTTCAGTGCTCCAGATTATCCACAGTTCCAAGCTTCAGAGGACCGGTACAACAATTGTGGAGCATATATTGTCCTCAATCCTCCAGATTTTTCCACCCCTGTTTTCCATAGCTTTGAAGCTGTAAAACCTCGACCTAAGGCAAATCCCTACTATGATTTTGAAGATGTAATAGACTCAGATGAAGAGTTAAATTTAGGCGCTATGGACGATGGCTCGGCGAGCAGTTGATCACATCTTTTGTCTTGTATCACTGTGTAACTGTATTTAGCATCCCGAACAGGGAAACGCCAACAAGTTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAATTCGTGTCATGTACTCATGTCTGCCAAGTTTTTGTCTGTTGGCTTCTTTTGGGCTAATCTCCCTATGCACATCATTTGTACCTCCAAAAAGAAAAATTATGTCAAGTAAGAGGCCTTGTGTTTGCAGTTCTGAGCTCTTGATGCACGAACTCATCAAGAGGATTTCGACAAAAAAAAAAAAA]

[+] EMBL AU100614             [TTAGGANTGGCCAATGGANATNCAATTGACCCATCATGTGGAATGTGGAAAGTTAATAACCTCTTTTCAGTGCTCCAGATTATCCACAGTTCCAAGCTTCAGAGGACCGGTACAACAATTGTGGAGCATATATTGTCCTCAATCCTCCAGATTTTTCCACCCCTGTTTTCCATAGCTTTGAAGCTGTAAAACCTCGACCTAAGGCAAATCCCTACTATGATTTTGAAGATGTAATAGACTCAGATGAAGAGTTAAATTTAGGCGCTATGGACGATGGCTCGGCGAGCAGTTGATCACATCTTTTGTCTTGTATCACTGTGTAACTGTATTTAGCATCCCGAACAGGGAAACGCCAACAAGTTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAATTCGTGTCATGTACTCATGTCTGCCAAGTTTTTGTCTGTTGGCTTCTTTTGGGCTAATCTCCCTATGCACATCATTTGTACCTCCAAAAAGAAAAATTATGTCAAGTAAGAGGCCTTGTGTTTGCAGTTCTGAGCTCTTGATGCACGAACTCATCAAGAGGATTTCGACAAAAAAAAAAAAA]




>consensus_2432#0
TTAGGANTGGCCAATGGANATNCAATTGACCCATCATGTGGAATGTGGAAAGTTAATAAC
CTCTTTTCAGTGCTCCAGATTATCCACAGTTCCAAGCTTCAGAGGACCGGTACAACAATT
GTGGAGCATATATTGTCCTCAATCCTCCAGATTTTTCCACCCCTGTTTTCCATAGCTTTG
AAGCTGTAAAACCTCGACCTAAGGCAAATCCCTACTATGATTTTGAAGATGTAATAGACT
CAGATGAAGAGTTAAATTTAGGCGCTATGGACGATGGCTCGGCGAGCAGTTGATCACATC
TTTTGTCTTGTATCACTGTGTAACTGTATTTAGCATCCCGAACAGGGAAACGCCAACAAG
TTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAATTCGTGTCATGTACTC
ATGTCTGCCAAGTTTTTGTCTGTTGGCTTCTTTTGGGCTAATCTCCCTATGCACATCATT
TGTACCTCCAAAAAGAAAAATTATGTCAAGTAAGAGGCCTTGTGTTTGCAGTTCTGAGCT
CTTGATGCACGAACTCATCAAGAGGATTTCGACAAAAAAAAAAAAA

consensusID : consensus_2432#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence

                              [TATCACTGTGTAACTGTATTTAGCATCCCGAAAGGGAAGCGCCAACAAGTTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTTTTTTTACGTACCGTAT]

[+] EMBL CF318244             [TATCACTGTGTAACTGTATTTAGCATCCCGAAAGGGAAGCGCCAACAAGTTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTTTTTTTACGTACCGTAT]




>consensus_2432#1
TATCACTGTGTAACTGTATTTAGCATCCCGAAAGGGAAGCGCCAACAAGTTTTTGTTGCA
ACCGAAACTGATATTGCAGGCTTTAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACACTGTCTTTTTTTTACGTACCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2432#0      TTAGGANTGGCCAATGGANATNCAATTGACCCATCATGTGGAATGTGGAAAGTTAATAAC 60
consensus_2432#1      ------------------------------------------------------------
                                                                                  

consensus_2432#0      CTCTTTTCAGTGCTCCAGATTATCCACAGTTCCAAGCTTCAGAGGACCGGTACAACAATT 120
consensus_2432#1      ------------------------------------------------------------
                                                                                  

consensus_2432#0      GTGGAGCATATATTGTCCTCAATCCTCCAGATTTTTCCACCCCTGTTTTCCATAGCTTTG 180
consensus_2432#1      ------------------------------------------------------------
                                                                                  

consensus_2432#0      AAGCTGTAAAACCTCGACCTAAGGCAAATCCCTACTATGATTTTGAAGATGTAATAGACT 240
consensus_2432#1      ------------------------------------------------------------
                                                                                  

consensus_2432#0      CAGATGAAGAGTTAAATTTAGGCGCTATGGACGATGGCTCGGCGAGCAGTTGATCACATC 300
consensus_2432#1      ------------------------------------------------------------
                                                                                  

consensus_2432#0      TTTTGTCTTGTATCACTGTGTAACTGTATTTAGCATCCCGAACAGGGAAACGCCAACAAG 360
consensus_2432#1      ----------TATCACTGTGTAACTGTATTTAGCATCCCGAA-AGGGAAGCGCCAACAAG 49
                                ******************************** ****** **********

consensus_2432#0      TTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAATTCGTGTCATGTACTC 420
consensus_2432#1      TTTTTGTTGCAACCGAAACTGATATTGCAGGCTTTAAAACAAAAAAAAAAAAAAAAAAAA 109
                      ********************************************        *   *   

consensus_2432#0      ATGTCTGCCAAGTTTTTGTCTGTTGGCTTCTTTTGGGCTAATCTCCCTATGCACATCATT 480
consensus_2432#1      AAAAAAAAAAAAAAAAAAAAAAACACTGTCTTTTTT-TTACGTACCGTAT---------- 158
                      *        **                 ******    **    ** ***          

consensus_2432#0      TGTACCTCCAAAAAGAAAAATTATGTCAAGTAAGAGGCCTTGTGTTTGCAGTTCTGAGCT 540
consensus_2432#1      ------------------------------------------------------------
                                                                                  

consensus_2432#0      CTTGATGCACGAACTCATCAAGAGGATTTCGACAAAAAAAAAAAAA 586
consensus_2432#1      ----------------------------------------------