cluster # 2436

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Oryza sativa
cluster # 2436 cluster # 2436 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2436#0 length = 630 sequences # 1

consensus_2436#1 length = 237 sequences # 1

consensusID : consensus_2436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [TTTTTTTTTTTTTTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAGAAGTGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCCAATAATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGAATGTTACAACATGTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATATGCTGCTGTGTCTCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACAGCTTCCAGGTGTGGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAGTATGAATTACCCGAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGCCACCACCATAACAGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCATGGCCAAGAAAGACAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAGTTTACCGTTGAGCAAGCCCCCCCTTGTCTC]

[+] EMBL CA762453             [TTTTTTTTTTTTTTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAGAAGTGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCCAATAATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGAATGTTACAACATGTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATATGCTGCTGTGTCTCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACAGCTTCCAGGTGTGGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAGTATGAATTACCCGAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGCCACCACCATAACAGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCATGGCCAAGAAAGACAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAGTTTACCGTTGAGCAAGCCCCCCCTTGTCTC]




>consensus_2436#0
TTTTTTTTTTTTTTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAAT
GGGAGAAAGAAGTGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGT
ATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAA
TCAGTTGCCAATAATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGA
ATGTTACAACATGTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATA
TGCTGCTGTGTCTCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACA
GCTTCCAGGTGTGGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAG
TATGAATTACCCGAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGC
CACCACCATAACAGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCAT
GGCCAAGAAAGACAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAG
TTTACCGTTGAGCAAGCCCCCCCTTGTCTC

consensusID : consensus_2436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGATGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAGTGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC]

[-] EMBL CF299882             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGATGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAGTGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC]




>consensus_2436#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGA
TGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAG
TGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAA
TCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2436#0      ------------------------------------------------TTTTTTTTTTTT 12
consensus_2436#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGA 60
                                                                        ****      

consensus_2436#0      TTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAGAAG 72
consensus_2436#1      TGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAG 120
                      *   ***** ********************************************** ***

consensus_2436#0      TGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGTATACAACAAAAA 132
consensus_2436#1      TGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAA 180
                      *************** **************************** ***************

consensus_2436#0      TCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCCAAT 192
consensus_2436#1      TCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC--- 237
                      *********************************************************   

consensus_2436#0      AATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGAATGTTACAACAT 252
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      GTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATATGCTGCTGTGTC 312
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      TCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACAGCTTCCAGGTGT 372
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      GGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAGTATGAATTACCC 432
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      GAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGCCACCACCATAAC 492
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      AGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCATGGCCAAGAAAGA 552
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      CAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAGTTTACCGTTGAG 612
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      CAAGCCCCCCCTTGTCTC 630
consensus_2436#1      ------------------