cluster # 2438

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Oryza sativa
cluster # 2438 cluster # 2438 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2438#0 length = 301 sequences # 1

consensus_2438#1 length = 299 sequences # 1

consensusID : consensus_2438#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [TGTCTCCGGAAGCCACCCTGAAGAACGGNTGCGCCGCGCCGTCGCTCGGGGAATTCCNCGAGATGGAGAGGAGAGNAAGCAGCAGCTCGTTGTAGCCTATGATCTCATATTCTCATGGGGAACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGTATTTCGAATCCTCNCATTTTCCANANAACCCGGGTCATTGTCGAATCTTTCATNAATCNTCANANTGAACTCTGCTACGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAAA]

[+] EMBL AU058065             [TGTCTCCGGAAGCCACCCTGAAGAACGGNTGCGCCGCGCCGTCGCTCGGGGAATTCCNCGAGATGGAGAGGAGAGNAAGCAGCAGCTCGTTGTAGCCTATGATCTCATATTCTCATGGGGAACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGTATTTCGAATCCTCNCATTTTCCANANAACCCGGGTCATTGTCGAATCTTTCATNAATCNTCANANTGAACTCTGCTACGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAAA]




>consensus_2438#0
TGTCTCCGGAAGCCACCCTGAAGAACGGNTGCGCCGCGCCGTCGCTCGGGGAATTCCNCG
AGATGGAGAGGAGAGNAAGCAGCAGCTCGTTGTAGCCTATGATCTCATATTCTCATGGGG
AACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGTATTTCGAATCCTCNCAT
TTTCCANANAACCCGGGTCATTGTCGAATCTTTCATNAATCNTCANANTGAACTCTGCTA
CGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAA
A

consensusID : consensus_2438#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [GCCTCCGNAGCCACCTGNAGAAACGGCCGCGCCGCGCCGTCGCTCGGGCAATTCCTCGAGATGGAGAGGAGAGCAAGCAGCAGCTCGTTGTAGCTTATGATCTCATATTCTCATGGGGAACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGCATTTCGATTCTTCTCATTTTCCAGAGAACCCGGGTCATTGTCGAATCTTTCATGATTCTTCACATTGATCTCTGCTACGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAAA]

[+] EMBL C99566               [GCCTCCGNAGCCACCTGNAGAAACGGCCGCGCCGCGCCGTCGCTCGGGCAATTCCTCGAGATGGAGAGGAGAGCAAGCAGCAGCTCGTTGTAGCTTATGATCTCATATTCTCATGGGGAACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGCATTTCGATTCTTCTCATTTTCCAGAGAACCCGGGTCATTGTCGAATCTTTCATGATTCTTCACATTGATCTCTGCTACGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAAA]




>consensus_2438#1
GCCTCCGNAGCCACCTGNAGAAACGGCCGCGCCGCGCCGTCGCTCGGGCAATTCCTCGAG
ATGGAGAGGAGAGCAAGCAGCAGCTCGTTGTAGCTTATGATCTCATATTCTCATGGGGAA
CCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGCATTTCGATTCTTCTCATTT
TCCAGAGAACCCGGGTCATTGTCGAATCTTTCATGATTCTTCACATTGATCTCTGCTACG
TTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2438#0      TGTCTCCGGAAGCCACCCTGAAGAACGGNTGCGCCGCGCCGTCGCTCGGGGAATTCCNCG 60
consensus_2438#1      -GCCTCCGNA-GCCACCTGNAGAAACGGCCGCGCCGCGCCGTCGCTCGGGCAATTCCTCG 58
                       * ***** * ******   *  *****  ******************** ****** **

consensus_2438#0      AGATGGAGAGGAGAGNAAGCAGCAGCTCGTTGTAGCCTATGATCTCATATTCTCATGGGG 120
consensus_2438#1      AGATGGAGAGGAGAGCAAGCAGCAGCTCGTTGTAGCTTATGATCTCATATTCTCATGGGG 118
                      *************** ******************** ***********************

consensus_2438#0      AACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGTATTTCGAATCCTCNCAT 180
consensus_2438#1      AACCATGGCTAGAGATGCTCGAGTTTGATCGGTTTCGCGTTGCATTTCGATTCTTCTCAT 178
                      ****************************************** ******* ** ** ***

consensus_2438#0      TTTCCANANAACCCGGGTCATTGTCGAATCTTTCATNAATCNTCANANTGAACTCTGCTA 240
consensus_2438#1      TTTCCAGAGAACCCGGGTCATTGTCGAATCTTTCATGATTCTTCACATTGATCTCTGCTA 238
                      ****** * *************************** * ** *** * *** ********

consensus_2438#0      CGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAA 300
consensus_2438#1      CGTTTGTCTTTGCCGAGTAAAACATTTGCCGATAAAAAAATAGACAAGTTCTTTATCAAA 298
                      ************************************************************

consensus_2438#0      A 301
consensus_2438#1      A 299
                      *