These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CGGCAATACTAACTTGGGCATAAAGAGGGTAATACTAACTTGTGCATAAAGAGCATAATATTGTTGGAGCCTTGGAGGACCAAATTATGTTCCTGCGACTGGAATTCCTAAATAATGAAGTCGCTGGGTGCAAAAAACATACATCTAATTTCTCATGCAGCAGTTTGACTACGGCATTCAAAATTTCAAAATTTCAAATACAATACGTCAAAAACTACAGTTAGCAGGTTATGAGGAGACATCCAGTTGGGATTTTCCTCCCCAGCTTCCTTTCCCGCGAAAGAAAAATTGCTGTCCCTCCCCCTTATTTGCCNCCGGGNGTTTAAACAAAAAGGGACGGGTTTTTTTAAACCCAACNCNTTGCAATAAAAANTAAAAAACATNNTTCNCCCCCTTAANTCNNGGGCCCCCCNTGGGCNAAAAATTTCCTTNNATTTCCCCCCNAAAAAATNGNGNTTTTTTGAGGCNAACCCCCCCTTTTTTCCCCCAAAATNCCCCCTTTGNCCNCAAAANCCNCCCCCNGGGAACCCCNCCAANAAANCAACCCCCTTCACCCCCCANATNNGGG] [+] EMBL BE229069 [CGGCAATACTAACTTGGGCATAAAGAGGGTAATACTAACTTGTGCATAAAGAGCATAATATTGTTGGAGCCTTGGAGGACCAAATTATGTTCCTGCGACTGGAATTCCTAAATAATGAAGTCGCTGGGTGCAAAAAACATACATCTAATTTCTCATGCAGCAGTTTGACTACGGCATTCAAAATTTCAAAATTTCAAATACAATACGTCAAAAACTACAGTTAGCAGGTTATGAGGAGACATCCAGTTGGGATTTTCCTCCCCAGCTTCCTTTCCCGCGAAAGAAAAATTGCTGTCCCTCCCCCTTATTTGCCNCCGGGNGTTTAAACAAAAAGGGACGGGTTTTTTTAAACCCAACNCNTTGCAATAAAAANTAAAAAACATNNTTCNCCCCCTTAANTCNNGGGCCCCCCNTGGGCNAAAAATTTCCTTNNATTTCCCCCCNAAAAAATNGNGNTTTTTTGAGGCNAACCCCCCCTTTTTTCCCCCAAAATNCCCCCTTTGNCCNCAAAANCCNCCCCCNGGGAACCCCNCCAANAAANCAACCCCCTTCACCCCCCANATNNGGG] consensusID : consensus_2442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence [AAAAGCGGCAATACTAACTGTGGGCATAAAGAGGGTAATACTAACTTGGTGCATAAANGAGCATAATATGGTGTGGAGCCTTGTGAGGACCAGTATTATGTACCTGGCGACGTGGAATTCCTAGAATAGATAGAAGTCG] [+] EMBL CB967097 [AAAAGCGGCAATACTAACTGTGGGCATAAAGAGGGTAATACTAACTTGGTGCATAAANGAGCATAATATGGTGTGGAGCCTTGTGAGGACCAGTATTATGTACCTGGCGACGTGGAATTCCTAGAATAGATAGAAGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2442#0 -----CGGCAATACTAACT-TGGGCATAAAGAGGGTAATACTAACTTG-TGCATAAAG-A 52 consensus_2442#1 AAAAGCGGCAATACTAACTGTGGGCATAAAGAGGGTAATACTAACTTGGTGCATAAANGA 60 ************** **************************** ******** * consensus_2442#0 GCATAATATTGT-TGGAGCCTTG-GAGGACCAA-ATTATGTTCCTG-CGAC-TGGAATTC 107 consensus_2442#1 GCATAATATGGTGTGGAGCCTTGTGAGGACCAGTATTATGTACCTGGCGACGTGGAATTC 120 ********* ** ********** ******** ******* **** **** ******** consensus_2442#0 CTAAATAATGAAGTCGCTGGGTGCAAAAAACATACATCTAATTTCTCATGCAGCAGTTTG 167 consensus_2442#1 CTAGAATAGATAGAAGTCG----------------------------------------- 139 *** * * ** * * consensus_2442#0 ACTACGGCATTCAAAATTTCAAAATTTCAAATACAATACGTCAAAAACTACAGTTAGCAG 227 consensus_2442#1 ------------------------------------------------------------ consensus_2442#0 GTTATGAGGAGACATCCAGTTGGGATTTTCCTCCCCAGCTTCCTTTCCCGCGAAAGAAAA 287 consensus_2442#1 ------------------------------------------------------------ consensus_2442#0 ATTGCTGTCCCTCCCCCTTATTTGCCNCCGGGNGTTTAAACAAAAAGGGACGGGTTTTTT 347 consensus_2442#1 ------------------------------------------------------------ consensus_2442#0 TAAACCCAACNCNTTGCAATAAAAANTAAAAAACATNNTTCNCCCCCTTAANTCNNGGGC 407 consensus_2442#1 ------------------------------------------------------------ consensus_2442#0 CCCCCNTGGGCNAAAAATTTCCTTNNATTTCCCCCCNAAAAAATNGNGNTTTTTTGAGGC 467 consensus_2442#1 ------------------------------------------------------------ consensus_2442#0 NAACCCCCCCTTTTTTCCCCCAAAATNCCCCCTTTGNCCNCAAAANCCNCCCCCNGGGAA 527 consensus_2442#1 ------------------------------------------------------------ consensus_2442#0 CCCCNCCAANAAANCAACCCCCTTCACCCCCCANATNNGGG 568 consensus_2442#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||