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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1561 fasta sequence
[TACTGGTGCCTGGTAGTAACCAGACACAGAGGGAAAGCAAAACAAGAGTGGGTGTCTCCTGTTGTCTGTCTTCCTCCTCGTTTGAGCTCCAAGCAAGCTTAGCCAAGAAACACCATAAAGAAGAGAGTGAGAGAGAGTGTGTGTGTGAGAGGAGGTGAGCTTCTCTCACATGCACATGGAGGGAGGGGAGGGCATTGCTGTAGCAGGTGCAGGTGGTGGCCATGAAGCCGGCTTCGGTTTGTTCAGAGCGGCCGATGTGGCCATGACAGAGGCGCAAGAAGCAGCCAAGGAGTACCAGTCTTCTCCCTCCTCGCCGTCGACGTCTCCTACTCCTTCCCCGCCGCCGGTTGCTGCCTCCGGCCATGGAGGGGAGGCCGCTGCAACGCCGACCATGTGGAGTTTGGGCGGCGAGAAGATGCCGAGTGAGGCTGCAGGGGACAACGGCATGCAGATGTCAGGCCACAGTGAGCATGCTAGCTTGAGCTCCGGACGGCGTAGGGGCCGGCCAAAAGGGTCCGGGAGACGCCAGATCCTAGCCACTCTAGGGGAATGGTATGCGCTATCAGCTGGAGGGAGCTTCACCCCTCATGTCATCATCGTAGGCACAGGGGAGGATGTGGCGGGGCGCATAATGTCCTTCTCTCAGAAGGGTCCACGCTCGATTTGCATCCTCTCTGCCAATGGGACCATCTCCAATGTGGCATTGAGCCAGCCTGGCTCGTCCGGTAGCACCTTCACCTACGAGGGTCGGTTTGAGATTCTGCAACTGACTGGCTCCTTTACAATGGCGGAAGAAGGTGGTCGGAGGAGAACTGGTGGGCTCAGTGTATCGCTTGCCGGTCCTGATGGCCGTGTCGTTGGTGGTGTAGTAGCTGGGATGCTGCGTGCCGCAAGCCCTATTCAGGTGATTGTGGGGAGCTTCCTGCCCAACAGCCTAAAGCAGCATCAGAGGAGGATGGGCCTACAACAGCAACCATCTGCTGCCCCGGCACTACCACCGCCTATGGCTCCACCTCCTGTGCTCACAGCTGCAATGCCTATCTCTCAGGCAGCTCCTGGAACTAATGGTTGCCATGCGCCGCAGGTCTCATCTATGCATCCGCAAGCCCACACCGGTGTAATGGAGCACATTGCAACAGCCAGTGGCGCCATGAACCTTAACAGCTCAAGCTCCACAGGTTTCACCATGGTTGGGTGGCCAGTCAGCTCACAGTCCATGGGGCACAGGCCTTCACCTGACATCAATGTCTGCTTAACTCCTCAGGAGTAGCATCAGCTATTGAGCTATCATCTTTTGTCACCCCCATCCCTGACACATTTTGTAGGGCATGGCTGTTAATCTTTGCCATGTGCGATGACAAATTATGGGCTCTATTCTAATCCATTAGGTCTGCGGTTTAATTTTGGGGGGAGAAACTAGGCAAGACTAAGGACAATTTAGCCAGAATCTGACAGAATGTGATAGTCTATTAGTTGCAGTTGCCCTCATCTAATTGTTAGGATATGTCATTGTGTTGGGACATCTGGTTTGTGATTCAGATTTCATTCTCGCTGTTGCTGG]
[+] EMBL AK102958 [TACTGGTGCCTGGTAGTAACCAGACACAGAGGGAAAGCAAAACAAGAGTGGGTGTCTCCTGTTGTCTGTCTTCCTCCTCGTTTGAGCTCCAAGCAAGCTTAGCCAAGAAACACCATAAAGAAGAGAGTGAGAGAGAGTGTGTGTGTGAGAGGAGGTGAGCTTCTCTCACATGCACATGGAGGGAGGGGAGGGCATTGCTGTAGCAGGTGCAGGTGGTGGCCATGAAGCCGGCTTCGGTTTGTTCAGAGCGGCCGATGTGGCCATGACAGAGGCGCAAGAAGCAGCCAAGGAGTACCAGTCTTCTCCCTCCTCGCCGTCGACGTCTCCTACTCCTTCCCCGCCGCCGGTTGCTGCCTCCGGCCATGGAGGGGAGGCCGCTGCAACGCCGACCATGTGGAGTTTGGGCGGCGAGAAGATGCCGAGTGAGGCTGCAGGGGACAACGGCATGCAGATGTCAGGCCACAGTGAGCATGCTAGCTTGAGCTCCGGACGGCGTAGGGGCCGGCCAAAAGGGTCCGGGAGACGCCAGATCCTAGCCACTCTAGGGGAATGGTATGCGCTATCAGCTGGAGGGAGCTTCACCCCTCATGTCATCATCGTAGGCACAGGGGAGGATGTGGCGGGGCGCATAATGTCCTTCTCTCAGAAGGGTCCACGCTCGATTTGCATCCTCTCTGCCAATGGGACCATCTCCAATGTGGCATTGAGCCAGCCTGGCTCGTCCGGTAGCACCTTCACCTACGAGGGTCGGTTTGAGATTCTGCAACTGACTGGCTCCTTTACAATGGCGGAAGAAGGTGGTCGGAGGAGAACTGGTGGGCTCAGTGTATCGCTTGCCGGTCCTGATGGCCGTGTCGTTGGTGGTGTAGTAGCTGGGATGCTGCGTGCCGCAAGCCCTATTCAGGTGATTGTGGGGAGCTTCCTGCCCAACAGCCTAAAGCAGCATCAGAGGAGGATGGGCCTACAACAGCAACCATCTGCTGCCCCGGCACTACCACCGCCTATGGCTCCACCTCCTGTGCTCACAGCTGCAATGCCTATCTCTCAGGCAGCTCCTGGAACTAATGGTTGCCATGCGCCGCAGGTCTCATCTATGCATCCGCAAGCCCACACCGGTGTAATGGAGCACATTGCAACAGCCAGTGGCGCCATGAACCTTAACAGCTCAAGCTCCACAGGTTTCACCATGGTTGGGTGGCCAGTCAGCTCACAGTCCATGGGGCACAGGCCTTCACCTGACATCAATGTCTGCTTAACTCCTCAGGAGTAGCATCAGCTATTGAGCTATCATCTTTTGTCACCCCCATCCCTGACACATTTTGTAGGGCATGGCTGTTAATCTTTGCCATGTGCGATGACAAATTATGGGCTCTATTCTAATCCATTAGGTCTGCGGTTTAATTTTGGGGGGAGAAACTAGGCAAGACTAAGGACAATTTAGCCAGAATCTGACAGAATGTGATAGTCTATTAGTTGCAGTTGCCCTCATCTAATTGTTAGGATATGTCATTGTGTTGGGACATCTGGTTTGTGATTCAGATTTCATTCTCGCTGTTGCTGG]
consensusID : consensus_2462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence
[CATTTCTCAGGCAGCTCNTGGCAACAATGGCTGCCGTTCGCCGCAGGTTTCGATCTCATCCATGCCTCCACAAGCACATGCCGGTNTGGAGCAGAGTAGAGGCGCCATGAACCTGAATTCATCGAGCTCCAGTACTGGTTTCGCCATGGTTGGGTGGCCTGCAGCTGCAAGCTCGCAGTCCATGGTGCACAGGCCTTCACCTGACATCAATGTCTGCTTGACTCCTCAAGAGTAGGATCAATTTGTCCTATTTTTTTGTTGCCCTCGTGCCTGACATGCGTTGTTGTGGCATGGCTGTCACGTGACATGTGTTTGGGTTCAATTCTATCTAATCACGTGTCTTGAGTAAAAAAAA]
[+] EMBL AU068541 [CATTTCTCAGGCAGCTCNTGGCAACAATGGCTGCCGTTCGCCGCAGGTTTCGATCTCATCCATGCCTCCACAAGCACATGCCGGTNTGGAGCAGAGTAGAGGCGCCATGAACCTGAATTCATCGAGCTCCAGTACTGGTTTCGCCATGGTTGGGTGGCCTGCAGCTGCAAGCTCGCAGTCCATGGTGCACAGGCCTTCACCTGACATCAATGTCTGCTTGACTCCTCAAGAGTAGGATCAATTTGTCCTATTTTTTTGTTGCCCTCGTGCCTGACATGCGTTGTTGTGGCATGGCTGTCACGTGACATGTGTTTGGGTTCAATTCTATCTAATCACGTGTCTTGAGTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2462#0 TACTGGTGCCTGGTAGTAACCAGACACAGAGGGAAAGCAAAACAAGAGTGGGTGTCTCCT 60
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GTTGTCTGTCTTCCTCCTCGTTTGAGCTCCAAGCAAGCTTAGCCAAGAAACACCATAAAG 120
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 AAGAGAGTGAGAGAGAGTGTGTGTGTGAGAGGAGGTGAGCTTCTCTCACATGCACATGGA 180
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GGGAGGGGAGGGCATTGCTGTAGCAGGTGCAGGTGGTGGCCATGAAGCCGGCTTCGGTTT 240
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GTTCAGAGCGGCCGATGTGGCCATGACAGAGGCGCAAGAAGCAGCCAAGGAGTACCAGTC 300
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 TTCTCCCTCCTCGCCGTCGACGTCTCCTACTCCTTCCCCGCCGCCGGTTGCTGCCTCCGG 360
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 CCATGGAGGGGAGGCCGCTGCAACGCCGACCATGTGGAGTTTGGGCGGCGAGAAGATGCC 420
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GAGTGAGGCTGCAGGGGACAACGGCATGCAGATGTCAGGCCACAGTGAGCATGCTAGCTT 480
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GAGCTCCGGACGGCGTAGGGGCCGGCCAAAAGGGTCCGGGAGACGCCAGATCCTAGCCAC 540
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 TCTAGGGGAATGGTATGCGCTATCAGCTGGAGGGAGCTTCACCCCTCATGTCATCATCGT 600
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 AGGCACAGGGGAGGATGTGGCGGGGCGCATAATGTCCTTCTCTCAGAAGGGTCCACGCTC 660
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GATTTGCATCCTCTCTGCCAATGGGACCATCTCCAATGTGGCATTGAGCCAGCCTGGCTC 720
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GTCCGGTAGCACCTTCACCTACGAGGGTCGGTTTGAGATTCTGCAACTGACTGGCTCCTT 780
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 TACAATGGCGGAAGAAGGTGGTCGGAGGAGAACTGGTGGGCTCAGTGTATCGCTTGCCGG 840
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 TCCTGATGGCCGTGTCGTTGGTGGTGTAGTAGCTGGGATGCTGCGTGCCGCAAGCCCTAT 900
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 TCAGGTGATTGTGGGGAGCTTCCTGCCCAACAGCCTAAAGCAGCATCAGAGGAGGATGGG 960
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 CCTACAACAGCAACCATCTGCTGCCCCGGCACTACCACCGCCTATGGCTCCACCTCCTGT 1020
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 GCTCACAGCTGCAATGCCTATCTCTCAGGCAGCTCCTGGAACTAATGGTTGCCATGCGCC 1080
consensus_2462#1 ------------------CATTTCTCAGGCAGCTCNTGGCAACAATGGCTGCCGTTCGCC 42
** ************* *** * ***** **** * ****
consensus_2462#0 GCAGGT------CTCATCTATGCATCCGCAAGCCCACACCGGTGTAATGGAGCACATTGC 1134
consensus_2462#1 GCAGGTTTCGATCTCATCCATGCCTCCACAAGCACATGCCGGTN---TGGAGCAGAGT-- 97
****** ****** **** *** ***** ** ***** ******* * *
consensus_2462#0 AACAGCCAGTGGCGCCATGAACCTTAACAGCTCAAGCTCCA---CAGGTTTCACCATGGT 1191
consensus_2462#1 -------AGAGGCGCCATGAACCTGAATTCATCGAGCTCCAGTACTGGTTTCGCCATGGT 150
** ************** ** ** ******* * ****** *******
consensus_2462#0 TGGGTGGCCAGTC------AGCTCACAGTCCATGGGGCACAGGCCTTCACCTGACATCAA 1245
consensus_2462#1 TGGGTGGCCTGCAGCTGCAAGCTCGCAGTCCATGGTGCACAGGCCTTCACCTGACATCAA 210
********* * ***** ********** ************************
consensus_2462#0 TGTCTGCTTAACTCCTCAGGAGTAGCATCAGCTATTGAGCTATCATCTTTTGTCACCCCC 1305
consensus_2462#1 TGTCTGCTTGACTCCTCAAGAGTAGGATCAAT--TTGTCCTAT--TTTTTTGTTGCCCTC 266
********* ******** ****** **** *** **** * ****** *** *
consensus_2462#0 ATCCCTGACACATTTTGTAG-GGCATGGCTGTTAATCTTTGCCATGTGCGATGACAAATT 1364
consensus_2462#1 GTGCCTGACATGCGTTGTTGTGGCATGGCTGTCA---CGTGACATGTG-----------T 312
* ******* **** * *********** * ** ****** *
consensus_2462#0 ATGGGCTCTATTCTAATCCATTAGGTCTGCGGTTTAATTTTGGGGGGAGAAACTAGGCAA 1424
consensus_2462#1 TTGGGTTCAATTCTATCTAATCACGT----------GTCTTGAGTAAAAAAAA------- 355
**** ** ****** ** * ** * *** * * ***
consensus_2462#0 GACTAAGGACAATTTAGCCAGAATCTGACAGAATGTGATAGTCTATTAGTTGCAGTTGCC 1484
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 CTCATCTAATTGTTAGGATATGTCATTGTGTTGGGACATCTGGTTTGTGATTCAGATTTC 1544
consensus_2462#1 ------------------------------------------------------------
consensus_2462#0 ATTCTCGCTGTTGCTGG 1561
consensus_2462#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||