These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [CACTTCCTCTCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGCAAAAGGATGTTCTGATAAGCTTCAATTCGAGCTGAAAGTTTTGTCACTGCGTAGCTAGGAAGATGGACTGATTTTCTACTTGGGATTTGGGAGTTCATATACATATACTTGACCTAAAAGTTTAAGCTTTTTTTTGTTGGTAATTAAGATAAAATTGAGCAATATGATTTTTTTTATATAAAGGAAACAACAAGCTTGTTGTTGCTGAGTGAGTTGAAAGTTTCTAGAAGAAAAACGAGTTAAAAGTAAAAAAAAAAGAAGTTGTCCTTGGAACCTTATTATGTGTTTTTTTTGGGATGAAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGGGCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTATGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAGACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCGAGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGCTGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGT] [+] EMBL CB681574 [CACTTCCTCTCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGCAAAAGGATGTTCTGATAAGCTTCAATTCGAGCTGAAAGTTTTGTCACTGCGTAGCTAGGAAGATGGACTGATTTTCTACTTGGGATTTGGGAGTTCATATACATATACTTGACCTAAAAGTTTAAGCTTTTTTTTGTTGGTAATTAAGATAAAATTGAGCAATATGATTTTTTTTATATAAAGGAAACAACAAGCTTGTTGTTGCTGAGTGAGTTGAAAGTTTCTAGAAGAAAAACGAGTTAAAAGTAAAAAAAAAAGAAGTTGTCCTTGGAACCTTATTATGTGTTTTTTTTGGGATGAAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGGGCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTATGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAGACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCGAGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGCTGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGT] consensusID : consensus_2466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [AGAAGACCTTTAAAGCGACGACCTCGTAGCTTGGTATAATTACATGTTATCCTGCACTGCAGCGAATCGCCAGAGCTACATCCGACGCAGTGCTGCTACACTTGCTCGCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGCAAAAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGGGCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTATGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAGACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCGAGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGCTGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGTCCTATGACATGGAGGACATCGTCGACACCTTCTTGGTGCGTTTCAATGACGGTCATGAGCCCGATGACCCACGGGTGCTCAGGCGCCTCCGCAAGAAGATGAGCAAACTGGTCAAGAAAGCCAAGGATCGCCGCGAGATTGCTGGCGCGATACGAAGAATCAATGA] [+] EMBL CB667276 [AGAAGACCTTTAAAGCGACGACCTCGTAGCTTGGTATAATTACATGTTATCCTGCACTGCAGCGAATCGCCAGAGCTACATCCGACGCAGTGCTGCTACACTTGCTCGCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGCAAAAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGGGCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTATGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAGACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCGAGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGCTGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGTCCTATGACATGGAGGACATCGTCGACACCTTCTTGGTGCGTTTCAATGACGGTCATGAGCCCGATGACCCACGGGTGCTCAGGCGCCTCCGCAAGAAGATGAGCAAACTGGTCAAGAAAGCCAAGGATCGCCGCGAGATTGCTGGCGCGATACGAAGAATCAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2466#0 CACTTCCTCTCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGC 60 consensus_2466#1 ------------------------------------------------------------ consensus_2466#0 AAAAGGATGTTCTGATAAGCTTCAATTCGAGCTGAAAGTTTTGTCACTGCGTAGCTAGGA 120 consensus_2466#1 ------------------------------------------------------------ consensus_2466#0 AGATGGACTGATTTTCTACTTGGGATTTGGGAGTTCATATACATATACTTGACCTAAAAG 180 consensus_2466#1 ----------------------------------------------AGAAGACCTTTAAA 14 * ***** ** consensus_2466#0 TTTAAGCTTTTTTTTGTTGGTA-ATTAAGATAAAATTGAGCAATATGATTTTTTTTATAT 239 consensus_2466#1 GCGACGACCTCGTAGCTTGGTATAATTACATGTTATCCTGCACTGCAGCGAATC----GC 70 * * * * ****** * * * ** ** *** * * consensus_2466#0 AAAGGAAACAACAAGCTTGTTGTTGCTGAGTGAGTTGAAAGTTTCTAGAAGAAAAACGAG 299 consensus_2466#1 CAGAGCTACATCCGACGCAGTGCTGCTACACTTGCT------CGCTGGTGGCGCTCCAGG 124 * * *** * * ** **** * * ** * * * * consensus_2466#0 TTAAAAGTAAAAAAAAAAGAAGTTGTCCTTGGAACCTTATTATGTGTTTTTTTTGGGATG 359 consensus_2466#1 TTCAA------------------TCCATTTG----CTAACTAGGAATCACC--TAGGCAA 160 ** ** * *** ** * ** * * * ** consensus_2466#0 AAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGG 419 consensus_2466#1 AAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGG 220 ************************************************************ consensus_2466#0 GCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTA 479 consensus_2466#1 GCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTA 280 ************************************************************ consensus_2466#0 TGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAG 539 consensus_2466#1 TGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAG 340 ************************************************************ consensus_2466#0 ACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCG 599 consensus_2466#1 ACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCG 400 ************************************************************ consensus_2466#0 AGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGC 659 consensus_2466#1 AGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGC 460 ************************************************************ consensus_2466#0 TGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGT------------------------ 695 consensus_2466#1 TGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGTCCTATGACATGGAGGACATCGTCG 520 ************************************ consensus_2466#0 ------------------------------------------------------------ consensus_2466#1 ACACCTTCTTGGTGCGTTTCAATGACGGTCATGAGCCCGATGACCCACGGGTGCTCAGGC 580 consensus_2466#0 ------------------------------------------------------------ consensus_2466#1 GCCTCCGCAAGAAGATGAGCAAACTGGTCAAGAAAGCCAAGGATCGCCGCGAGATTGCTG 640 consensus_2466#0 ---------------------- consensus_2466#1 GCGCGATACGAAGAATCAATGA 662 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||