cluster # 2466

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2466 cluster # 2466 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2466#0 length = 695 sequences # 1

consensus_2466#1 length = 662 sequences # 1

consensusID : consensus_2466#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [CACTTCCTCTCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGCAAAAGGATGTTCTGATAAGCTTCAATTCGAGCTGAAAGTTTTGTCACTGCGTAGCTAGGAAGATGGACTGATTTTCTACTTGGGATTTGGGAGTTCATATACATATACTTGACCTAAAAGTTTAAGCTTTTTTTTGTTGGTAATTAAGATAAAATTGAGCAATATGATTTTTTTTATATAAAGGAAACAACAAGCTTGTTGTTGCTGAGTGAGTTGAAAGTTTCTAGAAGAAAAACGAGTTAAAAGTAAAAAAAAAAGAAGTTGTCCTTGGAACCTTATTATGTGTTTTTTTTGGGATGAAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGGGCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTATGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAGACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCGAGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGCTGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGT]

[+] EMBL CB681574             [CACTTCCTCTCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGCAAAAGGATGTTCTGATAAGCTTCAATTCGAGCTGAAAGTTTTGTCACTGCGTAGCTAGGAAGATGGACTGATTTTCTACTTGGGATTTGGGAGTTCATATACATATACTTGACCTAAAAGTTTAAGCTTTTTTTTGTTGGTAATTAAGATAAAATTGAGCAATATGATTTTTTTTATATAAAGGAAACAACAAGCTTGTTGTTGCTGAGTGAGTTGAAAGTTTCTAGAAGAAAAACGAGTTAAAAGTAAAAAAAAAAGAAGTTGTCCTTGGAACCTTATTATGTGTTTTTTTTGGGATGAAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGGGCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTATGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAGACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCGAGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGCTGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGT]




>consensus_2466#0
CACTTCCTCTCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGC
AAAAGGATGTTCTGATAAGCTTCAATTCGAGCTGAAAGTTTTGTCACTGCGTAGCTAGGA
AGATGGACTGATTTTCTACTTGGGATTTGGGAGTTCATATACATATACTTGACCTAAAAG
TTTAAGCTTTTTTTTGTTGGTAATTAAGATAAAATTGAGCAATATGATTTTTTTTATATA
AAGGAAACAACAAGCTTGTTGTTGCTGAGTGAGTTGAAAGTTTCTAGAAGAAAAACGAGT
TAAAAGTAAAAAAAAAAGAAGTTGTCCTTGGAACCTTATTATGTGTTTTTTTTGGGATGA
AGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGGG
CAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTAT
GGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAGA
CGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCGA
GAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGCT
GGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGT

consensusID : consensus_2466#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [AGAAGACCTTTAAAGCGACGACCTCGTAGCTTGGTATAATTACATGTTATCCTGCACTGCAGCGAATCGCCAGAGCTACATCCGACGCAGTGCTGCTACACTTGCTCGCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGCAAAAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGGGCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTATGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAGACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCGAGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGCTGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGTCCTATGACATGGAGGACATCGTCGACACCTTCTTGGTGCGTTTCAATGACGGTCATGAGCCCGATGACCCACGGGTGCTCAGGCGCCTCCGCAAGAAGATGAGCAAACTGGTCAAGAAAGCCAAGGATCGCCGCGAGATTGCTGGCGCGATACGAAGAATCAATGA]

[+] EMBL CB667276             [AGAAGACCTTTAAAGCGACGACCTCGTAGCTTGGTATAATTACATGTTATCCTGCACTGCAGCGAATCGCCAGAGCTACATCCGACGCAGTGCTGCTACACTTGCTCGCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGCAAAAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGGGCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTATGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAGACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCGAGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGCTGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGTCCTATGACATGGAGGACATCGTCGACACCTTCTTGGTGCGTTTCAATGACGGTCATGAGCCCGATGACCCACGGGTGCTCAGGCGCCTCCGCAAGAAGATGAGCAAACTGGTCAAGAAAGCCAAGGATCGCCGCGAGATTGCTGGCGCGATACGAAGAATCAATGA]




>consensus_2466#1
AGAAGACCTTTAAAGCGACGACCTCGTAGCTTGGTATAATTACATGTTATCCTGCACTGC
AGCGAATCGCCAGAGCTACATCCGACGCAGTGCTGCTACACTTGCTCGCTGGTGGCGCTC
CAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGCAAAAGGAGAAGACGAAGGAATT
TGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGGGCAGATTAGCACCATCCATC
AGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTATGGAGCTGGTTACAGGGGTG
CTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAGACGAGTATGACCTGCAGAGG
GGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCGAGAGCGTGCACGCTGTCCTC
CGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGCTGGTCAAGCTCTGGGCACGT
GATGTGAGGGAGCTGTCCTATGACATGGAGGACATCGTCGACACCTTCTTGGTGCGTTTC
AATGACGGTCATGAGCCCGATGACCCACGGGTGCTCAGGCGCCTCCGCAAGAAGATGAGC
AAACTGGTCAAGAAAGCCAAGGATCGCCGCGAGATTGCTGGCGCGATACGAAGAATCAAT
GA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2466#0      CACTTCCTCTCTGGTGGCGCTCCAGGTTCAATCCATTTGCTAACTAGGAATCACCTAGGC 60
consensus_2466#1      ------------------------------------------------------------
                                                                                  

consensus_2466#0      AAAAGGATGTTCTGATAAGCTTCAATTCGAGCTGAAAGTTTTGTCACTGCGTAGCTAGGA 120
consensus_2466#1      ------------------------------------------------------------
                                                                                  

consensus_2466#0      AGATGGACTGATTTTCTACTTGGGATTTGGGAGTTCATATACATATACTTGACCTAAAAG 180
consensus_2466#1      ----------------------------------------------AGAAGACCTTTAAA 14
                                                                    *   *****  ** 

consensus_2466#0      TTTAAGCTTTTTTTTGTTGGTA-ATTAAGATAAAATTGAGCAATATGATTTTTTTTATAT 239
consensus_2466#1      GCGACGACCTCGTAGCTTGGTATAATTACATGTTATCCTGCACTGCAGCGAATC----GC 70
                         * *   *  *   ****** * * * **   **   *** *        *       

consensus_2466#0      AAAGGAAACAACAAGCTTGTTGTTGCTGAGTGAGTTGAAAGTTTCTAGAAGAAAAACGAG 299
consensus_2466#1      CAGAGCTACATCCGACGCAGTGCTGCTACACTTGCT------CGCTGGTGGCGCTCCAGG 124
                       *  *  *** *   *    ** ****      * *        ** *  *     *  *

consensus_2466#0      TTAAAAGTAAAAAAAAAAGAAGTTGTCCTTGGAACCTTATTATGTGTTTTTTTTGGGATG 359
consensus_2466#1      TTCAA------------------TCCATTTG----CTAACTAGGAATCACC--TAGGCAA 160
                      ** **                  *    ***    ** * ** *  *      * **   

consensus_2466#0      AAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGG 419
consensus_2466#1      AAGGAGAAGACGAAGGAATTTGACAAATTGAGGTGCCAGTAGCAGAAGCTAGGCACTGGG 220
                      ************************************************************

consensus_2466#0      GCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTA 479
consensus_2466#1      GCAGATTAGCACCATCCATCAGTTGAAAGCTGCTGCTGCACATAGCTTTGGTCCCAGGTA 280
                      ************************************************************

consensus_2466#0      TGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAG 539
consensus_2466#1      TGGAGCTGGTTACAGGGGTGCTGGGCAGTTTGCTCCCCAAGCTGGGCGAGCTGCTCAAAG 340
                      ************************************************************

consensus_2466#0      ACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCG 599
consensus_2466#1      ACGAGTATGACCTGCAGAGGGGCACGAGAGAGAAGATCAAGTCTCTGTCGCGGGAGCTCG 400
                      ************************************************************

consensus_2466#0      AGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGC 659
consensus_2466#1      AGAGCGTGCACGCTGTCCTCCGTATTGTCGGCGAGGTGCCATCGGAGCAGCTCGACGAGC 460
                      ************************************************************

consensus_2466#0      TGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGT------------------------ 695
consensus_2466#1      TGGTCAAGCTCTGGGCACGTGATGTGAGGGAGCTGTCCTATGACATGGAGGACATCGTCG 520
                      ************************************                        

consensus_2466#0      ------------------------------------------------------------
consensus_2466#1      ACACCTTCTTGGTGCGTTTCAATGACGGTCATGAGCCCGATGACCCACGGGTGCTCAGGC 580
                                                                                  

consensus_2466#0      ------------------------------------------------------------
consensus_2466#1      GCCTCCGCAAGAAGATGAGCAAACTGGTCAAGAAAGCCAAGGATCGCCGCGAGATTGCTG 640
                                                                                  

consensus_2466#0      ----------------------
consensus_2466#1      GCGCGATACGAAGAATCAATGA 662