cluster # 2467

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2467 cluster # 2467 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2467#0 length = 832 sequences # 1

consensus_2467#1 length = 284 sequences # 1

consensusID : consensus_2467#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 832
fasta sequence

                              [TCTTTTTTTTTTGGAAAAACGAAGACATGTACAAGACACATCCTTCACAGGATCGTCCCGTTGCATGTCTAGCAGTAGACAGGTGCAAGGAATTAAAAGTAAGTGTTACAACTGTAGTCTGGATAATTGTACGTCCAGGCCTCAGCTGAAAGAAACTAATGGAACTCTGGCCATCAACCATCTGAAATGTCAACAACGATACCTCTAGTTGGTGAGTTCAATGGTGACGATGCAGCTTGGCCAGCTTGATCCTCTGCTGCTACATGACTACTTACAGGATGATCTGGCAATGAACTTACATCAACTCGATTAGCTTGCACATTTTCAGATTTGTCATTGTCCCCCTGGCTTAGGGGGTAAGAGCCAGCACTGCTAGAATTTCTGCCATTTTCTACAAAAGATGTAGAACTAGCACCTTCACTGCCACTATTGGATTCCCTAGCAAGAACAAGTTTCAGTAACTTCTGCCGCTTTCTTCTTTCGGTTCTTTTATTTATCAAAGGCACCTCATCTTCATCTGACTCATCCACAGAATAGTAATTCAACCATTCAATGATTACAGAGTAGGAACCATCCCACTTGCTTATTTTTCTTTTCTTCTGTCTGCTGCACTCTTGATTCTTCTTTAGTGAGGTTGTTCTTGGACGCTTCGGTGCTTCCTGAACAGTTGTGGCGGTTAGACGGTCCAAACCAATATCCTTTGACAATTTGATTTTCTTATTAGCTGTGTCTCTTGAAGAGGACTCCATTCCAGAAATACCAATAGAGTCATCAGGAGGAAACCCAGCAGAGGTTTCTTCCAGTTCATGCTTATTGCCTTTTCCACCCCTAA]

[+] EMBL CB667302             [TCTTTTTTTTTTGGAAAAACGAAGACATGTACAAGACACATCCTTCACAGGATCGTCCCGTTGCATGTCTAGCAGTAGACAGGTGCAAGGAATTAAAAGTAAGTGTTACAACTGTAGTCTGGATAATTGTACGTCCAGGCCTCAGCTGAAAGAAACTAATGGAACTCTGGCCATCAACCATCTGAAATGTCAACAACGATACCTCTAGTTGGTGAGTTCAATGGTGACGATGCAGCTTGGCCAGCTTGATCCTCTGCTGCTACATGACTACTTACAGGATGATCTGGCAATGAACTTACATCAACTCGATTAGCTTGCACATTTTCAGATTTGTCATTGTCCCCCTGGCTTAGGGGGTAAGAGCCAGCACTGCTAGAATTTCTGCCATTTTCTACAAAAGATGTAGAACTAGCACCTTCACTGCCACTATTGGATTCCCTAGCAAGAACAAGTTTCAGTAACTTCTGCCGCTTTCTTCTTTCGGTTCTTTTATTTATCAAAGGCACCTCATCTTCATCTGACTCATCCACAGAATAGTAATTCAACCATTCAATGATTACAGAGTAGGAACCATCCCACTTGCTTATTTTTCTTTTCTTCTGTCTGCTGCACTCTTGATTCTTCTTTAGTGAGGTTGTTCTTGGACGCTTCGGTGCTTCCTGAACAGTTGTGGCGGTTAGACGGTCCAAACCAATATCCTTTGACAATTTGATTTTCTTATTAGCTGTGTCTCTTGAAGAGGACTCCATTCCAGAAATACCAATAGAGTCATCAGGAGGAAACCCAGCAGAGGTTTCTTCCAGTTCATGCTTATTGCCTTTTCCACCCCTAA]




>consensus_2467#0
TCTTTTTTTTTTGGAAAAACGAAGACATGTACAAGACACATCCTTCACAGGATCGTCCCG
TTGCATGTCTAGCAGTAGACAGGTGCAAGGAATTAAAAGTAAGTGTTACAACTGTAGTCT
GGATAATTGTACGTCCAGGCCTCAGCTGAAAGAAACTAATGGAACTCTGGCCATCAACCA
TCTGAAATGTCAACAACGATACCTCTAGTTGGTGAGTTCAATGGTGACGATGCAGCTTGG
CCAGCTTGATCCTCTGCTGCTACATGACTACTTACAGGATGATCTGGCAATGAACTTACA
TCAACTCGATTAGCTTGCACATTTTCAGATTTGTCATTGTCCCCCTGGCTTAGGGGGTAA
GAGCCAGCACTGCTAGAATTTCTGCCATTTTCTACAAAAGATGTAGAACTAGCACCTTCA
CTGCCACTATTGGATTCCCTAGCAAGAACAAGTTTCAGTAACTTCTGCCGCTTTCTTCTT
TCGGTTCTTTTATTTATCAAAGGCACCTCATCTTCATCTGACTCATCCACAGAATAGTAA
TTCAACCATTCAATGATTACAGAGTAGGAACCATCCCACTTGCTTATTTTTCTTTTCTTC
TGTCTGCTGCACTCTTGATTCTTCTTTAGTGAGGTTGTTCTTGGACGCTTCGGTGCTTCC
TGAACAGTTGTGGCGGTTAGACGGTCCAAACCAATATCCTTTGACAATTTGATTTTCTTA
TTAGCTGTGTCTCTTGAAGAGGACTCCATTCCAGAAATACCAATAGAGTCATCAGGAGGA
AACCCAGCAGAGGTTTCTTCCAGTTCATGCTTATTGCCTTTTCCACCCCTAA

consensusID : consensus_2467#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [AACAACTGCACTGCTGCACTCNTGATATCTTCAATTAGGTGAGGGTTGTTCTTGGACGCTTCGGTGCTTCCTTGAACAGTTGTGACGGTTAGACGGTCCAAACCAATATCCTTTGACAATTTGATTTTCTTATTAGCTGTGTCTCTTGAAGAGGACTCCATTCCAGAAATACCAATAGAGTCATCAGGAGGAAACCCAGCAGAGGTTTCTTCCAGTTCATGCTTATTGCCTTTTCCACCCTTAATTGATGCATGCGCATTGTGCCAACTTCCAGGGGCTGATTC]

[-] EMBL D43216               [AACAACTGCACTGCTGCACTCNTGATATCTTCAATTAGGTGAGGGTTGTTCTTGGACGCTTCGGTGCTTCCTTGAACAGTTGTGACGGTTAGACGGTCCAAACCAATATCCTTTGACAATTTGATTTTCTTATTAGCTGTGTCTCTTGAAGAGGACTCCATTCCAGAAATACCAATAGAGTCATCAGGAGGAAACCCAGCAGAGGTTTCTTCCAGTTCATGCTTATTGCCTTTTCCACCCTTAATTGATGCATGCGCATTGTGCCAACTTCCAGGGGCTGATTC]




>consensus_2467#1
AACAACTGCACTGCTGCACTCNTGATATCTTCAATTAGGTGAGGGTTGTTCTTGGACGCT
TCGGTGCTTCCTTGAACAGTTGTGACGGTTAGACGGTCCAAACCAATATCCTTTGACAAT
TTGATTTTCTTATTAGCTGTGTCTCTTGAAGAGGACTCCATTCCAGAAATACCAATAGAG
TCATCAGGAGGAAACCCAGCAGAGGTTTCTTCCAGTTCATGCTTATTGCCTTTTCCACCC
TTAATTGATGCATGCGCATTGTGCCAACTTCCAGGGGCTGATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2467#0      TCTTTTTTTTTTGGAAAAACGAAGACATGTACAAGACACATCCTTCACAGGATCGTCCCG 60
consensus_2467#1      ------------------------------------------------------------
                                                                                  

consensus_2467#0      TTGCATGTCTAGCAGTAGACAGGTGCAAGGAATTAAAAGTAAGTGTTACAACTGTAGTCT 120
consensus_2467#1      ------------------------------------------------------------
                                                                                  

consensus_2467#0      GGATAATTGTACGTCCAGGCCTCAGCTGAAAGAAACTAATGGAACTCTGGCCATCAACCA 180
consensus_2467#1      ------------------------------------------------------------
                                                                                  

consensus_2467#0      TCTGAAATGTCAACAACGATACCTCTAGTTGGTGAGTTCAATGGTGACGATGCAGCTTGG 240
consensus_2467#1      ------------------------------------------------------------
                                                                                  

consensus_2467#0      CCAGCTTGATCCTCTGCTGCTACATGACTACTTACAGGATGATCTGGCAATGAACTTACA 300
consensus_2467#1      ------------------------------------------------------------
                                                                                  

consensus_2467#0      TCAACTCGATTAGCTTGCACATTTTCAGATTTGTCATTGTCCCCCTGGCTTAGGGGGTAA 360
consensus_2467#1      ------------------------------------------------------------
                                                                                  

consensus_2467#0      GAGCCAGCACTGCTAGAATTTCTGCCATTTTCTACAAAAGATGTAGAACTAGCACCTTCA 420
consensus_2467#1      ------------------------------------------------------------
                                                                                  

consensus_2467#0      CTGCCACTATTGGATTCCCTAGCAAGAACAAGTTTCAGTAACTTCTGCCGCTTTCTTCTT 480
consensus_2467#1      ------------------------------------------------------------
                                                                                  

consensus_2467#0      TCGGTTCTTTTATTTATCAAAGGCACCTCATCTTCATCTGACTCATCCACAGAATAGTAA 540
consensus_2467#1      ------------------------------------------------------------
                                                                                  

consensus_2467#0      TTCAACCATTCAATGATTACAGAGTAGGAACCATCCCACTTGCTTATTTTTCTTTTCTTC 600
consensus_2467#1      ------------------------------------------------------AACAAC 6
                                                                              *  *

consensus_2467#0      TGT-CTGCTGCACTCTTGAT-TCTTC--TTTAGTGAGG-TTGTTCTTGGACGCTTCGGTG 655
consensus_2467#1      TGCACTGCTGCACTCNTGATATCTTCAATTAGGTGAGGGTTGTTCTTGGACGCTTCGGTG 66
                      **  *********** **** *****  **  ****** *********************

consensus_2467#0      CTTCCT-GAACAGTTGTGGCGGTTAGACGGTCCAAACCAATATCCTTTGACAATTTGATT 714
consensus_2467#1      CTTCCTTGAACAGTTGTGACGGTTAGACGGTCCAAACCAATATCCTTTGACAATTTGATT 126
                      ****** *********** *****************************************

consensus_2467#0      TTCTTATTAGCTGTGTCTCTTGAAGAGGACTCCATTCCAGAAATACCAATAGAGTCATCA 774
consensus_2467#1      TTCTTATTAGCTGTGTCTCTTGAAGAGGACTCCATTCCAGAAATACCAATAGAGTCATCA 186
                      ************************************************************

consensus_2467#0      GGAGGAAACCCAGCAGAGGTTTCTTCCAGTTCATGCTTATTGCCTTTTCCACCCCTAA-- 832
consensus_2467#1      GGAGGAAACCCAGCAGAGGTTTCTTCCAGTTCATGCTTATTGCCTTTTCCACCCTTAATT 246
                      ****************************************************** ***  

consensus_2467#0      --------------------------------------
consensus_2467#1      GATGCATGCGCATTGTGCCAACTTCCAGGGGCTGATTC 284