cluster # 2473

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Oryza sativa
cluster # 2473 cluster # 2473 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2473#0 length = 817 sequences # 1

consensus_2473#1 length = 614 sequences # 1

consensusID : consensus_2473#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 817
fasta sequence

                              [CTCTCTTTTTCCTTAGGCCCTTCCATTTCAGAGCCAGTCGCCACCTGAGCCGAGCTCTGATTCTTCCATTTCTCTCTGTGACCGAGGGAATCATCTACCAGATTCGGTTTCTTGATGGGAAGCAGTAATCGTGAACCCGTGCCTGCGCGGGGATTCGGTAGCCTCGTGCAGATACCGGATAAGATTCAGAACTCTCTCAAGGTGCATTTTGGGCGTTTCTTGAAGAAGAATGGCTTTGGTGGTGGTTCAGAGGCCGAAATGCTGCCGATGCAAATGCAGGGAACTTGTACTACTGTTGCTCCTGAGGTTAGGTTGGACAAGCAGCTCCAAGCTTGGAAGAACAATCCTATTTGGTCTGATGAACCTCCAGAAATCAAGGTGACTGTGCCACAAGGCTCTCTTTGCAACCTGAATCTGAAATTTAAGGCAGGATTACCTCCAGACGCAGTTTACAACATTATAATTGATCCAGAGAACAAAAGAGTTTTCAAAAACATCAAGGAAGTAATATCACGGAAAGTCGTGCTTGATGAAGGACAAAGGCAAATAGTTGAAGTGGAGCAGGCAGCAATATGGAGATTTCTCTGGTGGTCTGGTGTCTTGTCAGTTCATGTTTTTGTCGACCAGAACAGAACAAATCACACTGTAAAGTTCAAGCAAGGAAGAACAGGTTTTATGAAGAAATTTGAAGGTTGCTGGAAAATAGAGCCTCTATTTGTTGACAAGGAAGCATGCCATCCTTTAGACCCATGCACATTAGAAAAGTATGATTCCTGCACCAATGGCACAGGAAGAGTTGGATCTTCAATTACCTTGG]

[+] EMBL CB675894             [CTCTCTTTTTCCTTAGGCCCTTCCATTTCAGAGCCAGTCGCCACCTGAGCCGAGCTCTGATTCTTCCATTTCTCTCTGTGACCGAGGGAATCATCTACCAGATTCGGTTTCTTGATGGGAAGCAGTAATCGTGAACCCGTGCCTGCGCGGGGATTCGGTAGCCTCGTGCAGATACCGGATAAGATTCAGAACTCTCTCAAGGTGCATTTTGGGCGTTTCTTGAAGAAGAATGGCTTTGGTGGTGGTTCAGAGGCCGAAATGCTGCCGATGCAAATGCAGGGAACTTGTACTACTGTTGCTCCTGAGGTTAGGTTGGACAAGCAGCTCCAAGCTTGGAAGAACAATCCTATTTGGTCTGATGAACCTCCAGAAATCAAGGTGACTGTGCCACAAGGCTCTCTTTGCAACCTGAATCTGAAATTTAAGGCAGGATTACCTCCAGACGCAGTTTACAACATTATAATTGATCCAGAGAACAAAAGAGTTTTCAAAAACATCAAGGAAGTAATATCACGGAAAGTCGTGCTTGATGAAGGACAAAGGCAAATAGTTGAAGTGGAGCAGGCAGCAATATGGAGATTTCTCTGGTGGTCTGGTGTCTTGTCAGTTCATGTTTTTGTCGACCAGAACAGAACAAATCACACTGTAAAGTTCAAGCAAGGAAGAACAGGTTTTATGAAGAAATTTGAAGGTTGCTGGAAAATAGAGCCTCTATTTGTTGACAAGGAAGCATGCCATCCTTTAGACCCATGCACATTAGAAAAGTATGATTCCTGCACCAATGGCACAGGAAGAGTTGGATCTTCAATTACCTTGG]




>consensus_2473#0
CTCTCTTTTTCCTTAGGCCCTTCCATTTCAGAGCCAGTCGCCACCTGAGCCGAGCTCTGA
TTCTTCCATTTCTCTCTGTGACCGAGGGAATCATCTACCAGATTCGGTTTCTTGATGGGA
AGCAGTAATCGTGAACCCGTGCCTGCGCGGGGATTCGGTAGCCTCGTGCAGATACCGGAT
AAGATTCAGAACTCTCTCAAGGTGCATTTTGGGCGTTTCTTGAAGAAGAATGGCTTTGGT
GGTGGTTCAGAGGCCGAAATGCTGCCGATGCAAATGCAGGGAACTTGTACTACTGTTGCT
CCTGAGGTTAGGTTGGACAAGCAGCTCCAAGCTTGGAAGAACAATCCTATTTGGTCTGAT
GAACCTCCAGAAATCAAGGTGACTGTGCCACAAGGCTCTCTTTGCAACCTGAATCTGAAA
TTTAAGGCAGGATTACCTCCAGACGCAGTTTACAACATTATAATTGATCCAGAGAACAAA
AGAGTTTTCAAAAACATCAAGGAAGTAATATCACGGAAAGTCGTGCTTGATGAAGGACAA
AGGCAAATAGTTGAAGTGGAGCAGGCAGCAATATGGAGATTTCTCTGGTGGTCTGGTGTC
TTGTCAGTTCATGTTTTTGTCGACCAGAACAGAACAAATCACACTGTAAAGTTCAAGCAA
GGAAGAACAGGTTTTATGAAGAAATTTGAAGGTTGCTGGAAAATAGAGCCTCTATTTGTT
GACAAGGAAGCATGCCATCCTTTAGACCCATGCACATTAGAAAAGTATGATTCCTGCACC
AATGGCACAGGAAGAGTTGGATCTTCAATTACCTTGG

consensusID : consensus_2473#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [TTTTTTTTTTTTGACATTTTAACTGGGCAATTATTCACCTCATCAATTGTACACAGCTGAACATCCATTTTACATTATTACTGTACGAAAGAGTCGTGTGAAACAGTCCACAAACTAGTCACATGATGTTATTAGCCATCTACAAAATATCAATATGAATACCCTGCAATTCATCAAATTCTACAATGAAAACCACCTACCATTGGAGTACAGGTAAATTGGCCCTAAAATGCATCCTGTCCAGAAGCGAAAATGCCTAGTTTATCCTTGAGCAGTTAATCTAAGGGAGTTTCCATGCCGTCCTGTTTTTCTTCTCTGACGCCATCTTTCCTTAATATCATTGCACTCTTCTGTTAGATGATCTCTACTAGTATCACACTTTCCCTCAACATATTGCTTGTCAATAGCATTATTTGCCAAACCTCGCAGCCGAGCAGTTTCCGCTATCAGATCATTGACCAGCATCTCAGTTGTCCTCGTGGTAATCCCTCTCAGATACCATGAAAACGGAGGCGGGGGTACCATAGCAGGTTCAATAAGCTGATCCAAGGTAATTGAAGATCCAACTCTTCCTGTGCCATTGGTGCAGGAATCATACTTTCCCCTTGTCTCGT]

[+] EMBL CA762559             [TTTTTTTTTTTTGACATTTTAACTGGGCAATTATTCACCTCATCAATTGTACACAGCTGAACATCCATTTTACATTATTACTGTACGAAAGAGTCGTGTGAAACAGTCCACAAACTAGTCACATGATGTTATTAGCCATCTACAAAATATCAATATGAATACCCTGCAATTCATCAAATTCTACAATGAAAACCACCTACCATTGGAGTACAGGTAAATTGGCCCTAAAATGCATCCTGTCCAGAAGCGAAAATGCCTAGTTTATCCTTGAGCAGTTAATCTAAGGGAGTTTCCATGCCGTCCTGTTTTTCTTCTCTGACGCCATCTTTCCTTAATATCATTGCACTCTTCTGTTAGATGATCTCTACTAGTATCACACTTTCCCTCAACATATTGCTTGTCAATAGCATTATTTGCCAAACCTCGCAGCCGAGCAGTTTCCGCTATCAGATCATTGACCAGCATCTCAGTTGTCCTCGTGGTAATCCCTCTCAGATACCATGAAAACGGAGGCGGGGGTACCATAGCAGGTTCAATAAGCTGATCCAAGGTAATTGAAGATCCAACTCTTCCTGTGCCATTGGTGCAGGAATCATACTTTCCCCTTGTCTCGT]




>consensus_2473#1
TTTTTTTTTTTTGACATTTTAACTGGGCAATTATTCACCTCATCAATTGTACACAGCTGA
ACATCCATTTTACATTATTACTGTACGAAAGAGTCGTGTGAAACAGTCCACAAACTAGTC
ACATGATGTTATTAGCCATCTACAAAATATCAATATGAATACCCTGCAATTCATCAAATT
CTACAATGAAAACCACCTACCATTGGAGTACAGGTAAATTGGCCCTAAAATGCATCCTGT
CCAGAAGCGAAAATGCCTAGTTTATCCTTGAGCAGTTAATCTAAGGGAGTTTCCATGCCG
TCCTGTTTTTCTTCTCTGACGCCATCTTTCCTTAATATCATTGCACTCTTCTGTTAGATG
ATCTCTACTAGTATCACACTTTCCCTCAACATATTGCTTGTCAATAGCATTATTTGCCAA
ACCTCGCAGCCGAGCAGTTTCCGCTATCAGATCATTGACCAGCATCTCAGTTGTCCTCGT
GGTAATCCCTCTCAGATACCATGAAAACGGAGGCGGGGGTACCATAGCAGGTTCAATAAG
CTGATCCAAGGTAATTGAAGATCCAACTCTTCCTGTGCCATTGGTGCAGGAATCATACTT
TCCCCTTGTCTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2473#0      CTCTCTTTTTCCTTAGGCCCTTCCATTTCAGAGCCAGTCGCCACCTGAGCCGAGCTCTGA 60
consensus_2473#1      ---TTTTTTTTTTTTGACATTTTAACTGGGCAATTATTCACCTCATCAATTGTACACAGC 57
                         * *****  ** * *  **  * *    *   * ** ** * * *   *  * * * 

consensus_2473#0      TT--CTTCCATTTCTCTCTGTGACCGAGGGAATCATCTACCAGATTCGGTTTCTTGATGG 118
consensus_2473#1      TGAACATCCATTTTACATTATTACTGTACGAA---------AGAGTCG---------TGT 99
                      *   * *******  *  * * ** *   ***         *** ***         ** 

consensus_2473#0      GAAGCAGTAATCGTGAACCCGTGCCTGCGCGGGGATTCGGTAGCCTCGTGCAGA-TACCG 177
consensus_2473#1      GAAACAGT--CCACAAACTAGT-----CACATGATGTTATTAGCCATCTACAAAATATCA 152
                      *** ****   *   ***  **     * *  *   *   *****   * ** * ** * 

consensus_2473#0      G-ATAAG-ATTCAGAACTCTCTCAAGGTGCATTTTGGGCGTTTCTTGAAGAAGAATGGCT 235
consensus_2473#1      ATATGAATACCCTGCAATTCATCAAATTCTACAATGAAAACCACCT-----ACCATTGGA 207
                        ** *  *  * * * *   ****  *  *   **       * *     *  ** *  

consensus_2473#0      TTGGTGGTGGTTCAGAGGCCGAAATGCTGCCGATGCAAATGCAGGGAACTTGTACTACTG 295
consensus_2473#1      GTACAGGTAAATTGGCC-CTAAAATGCATCCTGTCCAGAAGC---GAAAATGCCTAGTTT 263
                       *   ***   *  *   *  ******  **  * ** * **   ***  **      * 

consensus_2473#0      TTGCTCCTGAGGTTAGGTTGGACAAGCAGCTCCAAGCTTGGAAGAACAATCCTATTTGGT 355
consensus_2473#1      ATCCTTGAGCAGTTAATCTA---AGGGAGTTTCCATGCCGTCCTGTTTTTCTTCTCTGAC 320
                       * **   *  ****   *    * * ** * * *    *         ** * * **  

consensus_2473#0      CTGATGAACCTCCAGAAATCAAGGTGACTGTGCCACAAGGCTCTCTTTGC-AACCTGAAT 414
consensus_2473#1      GCCATCTTTCCTTA-ATATCATTGC-ACTCTTCTGTTAGATGATCTCTACTAGTATCACA 378
                         **    *   * * ****  *  *** * *    **    *** * * *   * *  

consensus_2473#0      CTGAAATTTAAGGCAGGATTACCTCCAGACGCAGTTTACAACATTATA-ATTGATCCAGA 473
consensus_2473#1      CTTTCCCTCAACATA---TTGCTT---------GTCAATAGCATTATTTGCCAAACCTCG 426
                      **     * **   *   ** * *         **  * * ******      * **   

consensus_2473#0      GAACAAAAGAGTTTTCAAAAACAT-CAAGGAAGTAATATCACGGAAAGTCGTGCTTGATG 532
consensus_2473#1      CAGCCGAGCAGTTTCCGCTATCAGATCATTGACCAGCATCTC----AGTTGTCCTCG-TG 481
                       * *  *  ***** *   * **    *   *  *  *** *    *** ** ** * **

consensus_2473#0      AAGGACAAAGGCAAATA--GTTGAAGTGGAGCAGGCAGCAATATGGAGATTTCTCTGG-- 588
consensus_2473#1      GTAATCCCTCTCAGATACCATGAAAACGGAGGCGGGGGTACCATAGCAGGTTCAATAAGC 541
                           *     ** ***   *  **  ****  **  * *  ** *    ***  *    

consensus_2473#0      TGGTCTGGTGTC-TTGTCAGTTCATGTTTTTGTCGACCAGAACAGAACAAATCACACTGT 647
consensus_2473#1      TGATCCAAGGTAATTGAAGATCCAACTCTTCCTGTGCCATTGGTGCAGGAATCATACTTT 601
                      ** **    **  ***    * **  * **  *   ***     * *  ***** *** *

consensus_2473#0      AAAGTTCAAGCAAGGAAGAACAGGTTTTATGAAGAAATTTGAAGGTTGCTGGAAAATAGA 707
consensus_2473#1      CCCCTTGTCTCGT----------------------------------------------- 614
                          **    *                                                 

consensus_2473#0      GCCTCTATTTGTTGACAAGGAAGCATGCCATCCTTTAGACCCATGCACATTAGAAAAGTA 767
consensus_2473#1      ------------------------------------------------------------
                                                                                  

consensus_2473#0      TGATTCCTGCACCAATGGCACAGGAAGAGTTGGATCTTCAATTACCTTGG 817
consensus_2473#1      --------------------------------------------------