These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2000 fasta sequence [AATCACTTGCAAAACCAACACAAACACAACACAAGCAACACACACAAGCTTCTCCTTCCAAAATACTCCTCAACTAGCTAAGTCTAAGCTTCATCGATCCAAGCAAGCTAAGCCATGGTGCTCCAACACAGTGATCGCATGGACAGCCTCTTCTCCCCACAGACGAGCTGGGTGAGCGGCCCGATCATCGTGGGCGCCGGGCCGTCGGGGCTCGCCGTGGCGGCGAGCCTGCGGGAGCAGGGCGTGCCGTTCACCATGCTGGAGCGCGCCGACTGCATCGCGTCGCTGTGGCAGAAGCGCACCTACGACCGCCTCAAGCTCCACCTCCCCAAGCAGTTCTGCGAGCTCCCGCGCATGGCGTTCCCGGCGCACTACCCGGAGTACCCGACGCGCCGCCAGTTCATCGACTACCTCGAGGACTACGCCGCCGCGTTCGACATCAACCCGCTCTTCGGCCACACCGTGCTCTCCGCGCGCTACGACGAGACGTCCGGCCTGTGGCGCGTGCGCGCCTCCTCGTCCGCCGGCGCCGAGATGGAGTACATTGGCAGCTGGCTCGTCGTCGCCACCGGCGAGAACGCCGAGAGCGTCGTCCCGGACATCCCCGGGATCGATGGGTTCGGCGGCGAGGTGGTGCACGTCGCCGACTACAAGTCCGGCGAGGCGTACCGCGGCAAGAGGGTGCTCGTCGTCGGGTGCGGCAACTCCGGTATGGAGGTGTCGCTGGACCTGTGCGACCACGGCGCACGCCCGGCGATGGTGGTGCGCGACGCCGTCCACGTCCTCCCCCGGGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGCTGCTCATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGCTCGTCCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCGCCACCGGCCCGCTCGAGCTCAAGAACACCACCGGCCGCACCCCGGTGCTCGACTACGGCGCCCTCGCCAGGATCCGCTCCGGCGAGATCACCGTCGTCCCCGGCGTCGCCCGCTTCGGCAGGGGCTTCGCCGAGCTCGCCGACGGCCGCGTCATCGCCCTCGACGCCGTCGTCCTCGCCACCGGCTACCGCAGCAATGTGCCCCAATGGCTCCAGGGAAATGACTTCTTCAACAAGGACGGGTACCCAAAGACGGCGTTCCCCAACGGATGGAAGGGTGAGTCGGGGCTGTACGCCGTCGGCTTCACCCGGCGCGGCCTCTCCGGCGCCTCCGCCGACGCCATGCGCGCCGCCAAGGACCTTGCCAGGGTGTGGAAGGAGGCGACGAAGCCAACCAAGAAGAGCACGGCGTGCCACCGGAGGTGCATCTCCGTCATCTTCTAAGCCGCCGCCGGCCACCGTTGCTACTGCTACTCGATCCATCAATCCCCTTGGTTAAATTCGTTGTTGATTAAGATTGGTTCTTTCTTTCTTTCTTGAAGAATTAAATTAAATTAAGCTAGGAGAGTGTGATCATACTACGTTGCTAGGTTAGTGATATTGTAGGACACAGCAGTGAGAGTGGGAGAGTATAAAAAAAAATAAGGTTAATTATTTGAGAGTTGAAAAAAAAAGAAAGAAAAAGAGAGACAAGGTGGAGCCCTCTCGTCAGTGGGAAGTGAGAGCCCTAGGGGATTTTTACTGCAGCTAGAGGCGTCTGGTGTACAGAAGAAGTGAGCTTGCCAGTTGATGGAAGATGAGGCTCTTGTCATTGACCTATTGTTTCTTTTGTTCTATATATGTATGTATAATCTTATATAATATCCCCTACTAGTAGTATGTAGTGGCCTTAATTAATCTGATGATGATGATTAGTAGTAGTAGTAGTAGTAAGCACCTCTTAGTTTAGTTGTTACTGCCTCTCCAGTGACAGTTCTTTTGTAATCTTTGCAATCACCTTTTGTAACTCCCTTTGTATAACAACTCTTTACTTGAGAGTTGAGAGTGAATATATATATAACTAGTGTAAT] [+] EMBL AK068976 [AATCACTTGCAAAACCAACACAAACACAACACAAGCAACACACACAAGCTTCTCCTTCCAAAATACTCCTCAACTAGCTAAGTCTAAGCTTCATCGATCCAAGCAAGCTAAGCCATGGTGCTCCAACACAGTGATCGCATGGACAGCCTCTTCTCCCCACAGACGAGCTGGGTGAGCGGCCCGATCATCGTGGGCGCCGGGCCGTCGGGGCTCGCCGTGGCGGCGAGCCTGCGGGAGCAGGGCGTGCCGTTCACCATGCTGGAGCGCGCCGACTGCATCGCGTCGCTGTGGCAGAAGCGCACCTACGACCGCCTCAAGCTCCACCTCCCCAAGCAGTTCTGCGAGCTCCCGCGCATGGCGTTCCCGGCGCACTACCCGGAGTACCCGACGCGCCGCCAGTTCATCGACTACCTCGAGGACTACGCCGCCGCGTTCGACATCAACCCGCTCTTCGGCCACACCGTGCTCTCCGCGCGCTACGACGAGACGTCCGGCCTGTGGCGCGTGCGCGCCTCCTCGTCCGCCGGCGCCGAGATGGAGTACATTGGCAGCTGGCTCGTCGTCGCCACCGGCGAGAACGCCGAGAGCGTCGTCCCGGACATCCCCGGGATCGATGGGTTCGGCGGCGAGGTGGTGCACGTCGCCGACTACAAGTCCGGCGAGGCGTACCGCGGCAAGAGGGTGCTCGTCGTCGGGTGCGGCAACTCCGGTATGGAGGTGTCGCTGGACCTGTGCGACCACGGCGCACGCCCGGCGATGGTGGTGCGCGACGCCGTCCACGTCCTCCCCCGGGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGCTGCTCATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGCTCGTCCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCGCCACCGGCCCGCTCGAGCTCAAGAACACCACCGGCCGCACCCCGGTGCTCGACTACGGCGCCCTCGCCAGGATCCGCTCCGGCGAGATCACCGTCGTCCCCGGCGTCGCCCGCTTCGGCAGGGGCTTCGCCGAGCTCGCCGACGGCCGCGTCATCGCCCTCGACGCCGTCGTCCTCGCCACCGGCTACCGCAGCAATGTGCCCCAATGGCTCCAGGGAAATGACTTCTTCAACAAGGACGGGTACCCAAAGACGGCGTTCCCCAACGGATGGAAGGGTGAGTCGGGGCTGTACGCCGTCGGCTTCACCCGGCGCGGCCTCTCCGGCGCCTCCGCCGACGCCATGCGCGCCGCCAAGGACCTTGCCAGGGTGTGGAAGGAGGCGACGAAGCCAACCAAGAAGAGCACGGCGTGCCACCGGAGGTGCATCTCCGTCATCTTCTAAGCCGCCGCCGGCCACCGTTGCTACTGCTACTCGATCCATCAATCCCCTTGGTTAAATTCGTTGTTGATTAAGATTGGTTCTTTCTTTCTTTCTTGAAGAATTAAATTAAATTAAGCTAGGAGAGTGTGATCATACTACGTTGCTAGGTTAGTGATATTGTAGGACACAGCAGTGAGAGTGGGAGAGTATAAAAAAAAATAAGGTTAATTATTTGAGAGTTGAAAAAAAAAGAAAGAAAAAGAGAGACAAGGTGGAGCCCTCTCGTCAGTGGGAAGTGAGAGCCCTAGGGGATTTTTACTGCAGCTAGAGGCGTCTGGTGTACAGAAGAAGTGAGCTTGCCAGTTGATGGAAGATGAGGCTCTTGTCATTGACCTATTGTTTCTTTTGTTCTATATATGTATGTATAATCTTATATAATATCCCCTACTAGTAGTATGTAGTGGCCTTAATTAATCTGATGATGATGATTAGTAGTAGTAGTAGTAGTAAGCACCTCTTAGTTTAGTTGTTACTGCCTCTCCAGTGACAGTTCTTTTGTAATCTTTGCAATCACCTTTTGTAACTCCCTTTGTATAACAACTCTTTACTTGAGAGTTGAGAGTGAATATATATATAACTAGTGTAAT] consensusID : consensus_2474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [TAAAAATTTGAATTCAAATTTAAAATTTGCGGGCGAAATTTCTGAAAAAGAGAACAAAAACAGATAGCAACACTCGCTCTACTCGGCAGCCATACAAGCTGCAGCTGCTGCATCACAAATTCGCTGCAAGCTGCAGCAGCAATTCTGAACACACCCACTGACAGCAAGTCTCCACAGTCCAAGAACAAATATAGCAGCGAGGTGATGCATGTCGCGGTCTACAAGTCCGGCGAGGCATACCGCGGCAAGAAGGTGCTCGTCGTCGGGTGCGGCAACTCCGGCATGGTGGTGTCGCTCGACCTGTGCGACCACAGCGCCCTCCCGGCGATGGTGGTGCGCGACGCCGTCCACGTCCTCCCTGGCGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGTTGCTCATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGTTCGTCCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCACCACTGGGCGGCTGGGGGCGATGGGGCGACGGCTTGGAGGGGGGCGTGCAGCGCCGGCGGTACGGCGACCGGCGTCGAGGCGGTGACTGGCGACTCGGCGAGATAGCGATTT] [-] EMBL AK111025 [TAAAAATTTGAATTCAAATTTAAAATTTGCGGGCGAAATTTCTGAAAAAGAGAACAAAAACAGATAGCAACACTCGCTCTACTCGGCAGCCATACAAGCTGCAGCTGCTGCATCACAAATTCGCTGCAAGCTGCAGCAGCAATTCTGAACACACCCACTGACAGCAAGTCTCCACAGTCCAAGAACAAATATAGCAGCGAGGTGATGCATGTCGCGGTCTACAAGTCCGGCGAGGCATACCGCGGCAAGAAGGTGCTCGTCGTCGGGTGCGGCAACTCCGGCATGGTGGTGTCGCTCGACCTGTGCGACCACAGCGCCCTCCCGGCGATGGTGGTGCGCGACGCCGTCCACGTCCTCCCTGGCGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGTTGCTCATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGTTCGTCCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCACCACTGGGCGGCTGGGGGCGATGGGGCGACGGCTTGGAGGGGGGCGTGCAGCGCCGGCGGTACGGCGACCGGCGTCGAGGCGGTGACTGGCGACTCGGCGAGATAGCGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2474#0 AATCACTTGCAAAACCAACACAAACACAACACAAGCAACACACACAAGCTTCTCCTTCCA 60 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 AAATACTCCTCAACTAGCTAAGTCTAAGCTTCATCGATCCAAGCAAGCTAAGCCATGGTG 120 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 CTCCAACACAGTGATCGCATGGACAGCCTCTTCTCCCCACAGACGAGCTGGGTGAGCGGC 180 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 CCGATCATCGTGGGCGCCGGGCCGTCGGGGCTCGCCGTGGCGGCGAGCCTGCGGGAGCAG 240 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 GGCGTGCCGTTCACCATGCTGGAGCGCGCCGACTGCATCGCGTCGCTGTGGCAGAAGCGC 300 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 ACCTACGACCGCCTCAAGCTCCACCTCCCCAAGCAGTTCTGCGAGCTCCCGCGCATGGCG 360 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 TTCCCGGCGCACTACCCGGAGTACCCGACGCGCCGCCAGTTCATCGACTACCTCGAGGAC 420 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 TACGCCGCCGCGTTCGACATCAACCCGCTCTTCGGCCACACCGTGCTCTCCGCGCGCTAC 480 consensus_2474#1 TAAAAATTTGAATTCAAATTTAA---AATTTGCGGGCGAAA-----TTTCTGAAAAAGAG 52 ** * *** * * ** * * *** * * * ** * * consensus_2474#0 GACGAGACGTCCGGCCTGTGGCGCGTGCGCGCCTCCTCGTCCGCCGGCGCCGAGATGGAG 540 consensus_2474#1 AACAAAAA---CAGATAGCAACACTCGC---TCTACTCGGCAGCCATA--CAAGCTGCAG 104 ** * * * * * * * ** ** **** * *** * ** ** ** consensus_2474#0 TACATTGGCAGCTGGCTCGTCGTCGCCACCGGCGAGAACGCCGAGAGCGTCGTC---CCG 597 consensus_2474#1 CTGCTGCATCACAAATTCGCTGCAAGCTGCAGCAGCAATTCTGAACACACCCACTGACAG 164 * * *** * * * ** ** * ** * * * * * consensus_2474#0 GACATCCCCGGGATC----GATGGGTTCGGCGGCGAGGTGGTGCACGTCGCCGACTACAA 653 consensus_2474#1 CAAGTCTCCACAGTCCAAGAACAAATATAGCAGCGAGGTGATGCATGTCGCGGTCTACAA 224 * ** ** ** * * ** ******** **** ***** * ****** consensus_2474#0 GTCCGGCGAGGCGTACCGCGGCAAGAGGGTGCTCGTCGTCGGGTGCGGCAACTCCGGTAT 713 consensus_2474#1 GTCCGGCGAGGCATACCGCGGCAAGAAGGTGCTCGTCGTCGGGTGCGGCAACTCCGGCAT 284 ************ ************* ****************************** ** consensus_2474#0 GGAGGTGTCGCTGGACCTGTGCGACCACGGCGCACGCCCGGCGATGGTGGTGCGCGACGC 773 consensus_2474#1 GGTGGTGTCGCTCGACCTGTGCGACCACAGCGCCCTCCCGGCGATGGTGGTGCGCGACGC 344 ** ********* *************** **** * ************************ consensus_2474#0 CGTCCACGTCCTCCCCCGGGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGCTGCT 833 consensus_2474#1 CGTCCACGTCCTCCCTGGCGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGTTGCT 404 *************** * ************************************ **** consensus_2474#0 CATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGCTCGT 893 consensus_2474#1 CATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGTTCGT 464 ******************************************************* **** consensus_2474#0 CCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCGCCACCGGCCCGCTCGAGCTCAA 953 consensus_2474#1 CCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCACCACTGGGCGGCT-GGGGGCGA 523 ************************************* **** ** * *** * * * * consensus_2474#0 GAACACCACCGGCCGCACCCCGGTGCTCGACTACGGCGCCCTCGCCAGGATCCGCTCCGG 1013 consensus_2474#1 TGGGGCGACGGCTTGGAGGGGGGCGTGCAGCGCCGGCGGTACGGC---GACCGGCGTCGA 580 * ** * * * ** * * * ***** ** ** * ** ** consensus_2474#0 CGAGATCACCGTCGTCCCCG-GCGTCGCCCGCTTCGGCAGGGGCTTCGCCGAGCTCGCCG 1072 consensus_2474#1 GGCGGTGACTGGCGACTCGGCGAGATAGCGATTT-------------------------- 614 * * * ** * ** * * * * * * ** consensus_2474#0 ACGGCCGCGTCATCGCCCTCGACGCCGTCGTCCTCGCCACCGGCTACCGCAGCAATGTGC 1132 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 CCCAATGGCTCCAGGGAAATGACTTCTTCAACAAGGACGGGTACCCAAAGACGGCGTTCC 1192 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 CCAACGGATGGAAGGGTGAGTCGGGGCTGTACGCCGTCGGCTTCACCCGGCGCGGCCTCT 1252 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 CCGGCGCCTCCGCCGACGCCATGCGCGCCGCCAAGGACCTTGCCAGGGTGTGGAAGGAGG 1312 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 CGACGAAGCCAACCAAGAAGAGCACGGCGTGCCACCGGAGGTGCATCTCCGTCATCTTCT 1372 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 AAGCCGCCGCCGGCCACCGTTGCTACTGCTACTCGATCCATCAATCCCCTTGGTTAAATT 1432 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 CGTTGTTGATTAAGATTGGTTCTTTCTTTCTTTCTTGAAGAATTAAATTAAATTAAGCTA 1492 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 GGAGAGTGTGATCATACTACGTTGCTAGGTTAGTGATATTGTAGGACACAGCAGTGAGAG 1552 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 TGGGAGAGTATAAAAAAAAATAAGGTTAATTATTTGAGAGTTGAAAAAAAAAGAAAGAAA 1612 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 AAGAGAGACAAGGTGGAGCCCTCTCGTCAGTGGGAAGTGAGAGCCCTAGGGGATTTTTAC 1672 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 TGCAGCTAGAGGCGTCTGGTGTACAGAAGAAGTGAGCTTGCCAGTTGATGGAAGATGAGG 1732 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 CTCTTGTCATTGACCTATTGTTTCTTTTGTTCTATATATGTATGTATAATCTTATATAAT 1792 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 ATCCCCTACTAGTAGTATGTAGTGGCCTTAATTAATCTGATGATGATGATTAGTAGTAGT 1852 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 AGTAGTAGTAAGCACCTCTTAGTTTAGTTGTTACTGCCTCTCCAGTGACAGTTCTTTTGT 1912 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 AATCTTTGCAATCACCTTTTGTAACTCCCTTTGTATAACAACTCTTTACTTGAGAGTTGA 1972 consensus_2474#1 ------------------------------------------------------------ consensus_2474#0 GAGTGAATATATATATAACTAGTGTAAT 2000 consensus_2474#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||