|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2000 fasta sequence
[AATCACTTGCAAAACCAACACAAACACAACACAAGCAACACACACAAGCTTCTCCTTCCAAAATACTCCTCAACTAGCTAAGTCTAAGCTTCATCGATCCAAGCAAGCTAAGCCATGGTGCTCCAACACAGTGATCGCATGGACAGCCTCTTCTCCCCACAGACGAGCTGGGTGAGCGGCCCGATCATCGTGGGCGCCGGGCCGTCGGGGCTCGCCGTGGCGGCGAGCCTGCGGGAGCAGGGCGTGCCGTTCACCATGCTGGAGCGCGCCGACTGCATCGCGTCGCTGTGGCAGAAGCGCACCTACGACCGCCTCAAGCTCCACCTCCCCAAGCAGTTCTGCGAGCTCCCGCGCATGGCGTTCCCGGCGCACTACCCGGAGTACCCGACGCGCCGCCAGTTCATCGACTACCTCGAGGACTACGCCGCCGCGTTCGACATCAACCCGCTCTTCGGCCACACCGTGCTCTCCGCGCGCTACGACGAGACGTCCGGCCTGTGGCGCGTGCGCGCCTCCTCGTCCGCCGGCGCCGAGATGGAGTACATTGGCAGCTGGCTCGTCGTCGCCACCGGCGAGAACGCCGAGAGCGTCGTCCCGGACATCCCCGGGATCGATGGGTTCGGCGGCGAGGTGGTGCACGTCGCCGACTACAAGTCCGGCGAGGCGTACCGCGGCAAGAGGGTGCTCGTCGTCGGGTGCGGCAACTCCGGTATGGAGGTGTCGCTGGACCTGTGCGACCACGGCGCACGCCCGGCGATGGTGGTGCGCGACGCCGTCCACGTCCTCCCCCGGGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGCTGCTCATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGCTCGTCCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCGCCACCGGCCCGCTCGAGCTCAAGAACACCACCGGCCGCACCCCGGTGCTCGACTACGGCGCCCTCGCCAGGATCCGCTCCGGCGAGATCACCGTCGTCCCCGGCGTCGCCCGCTTCGGCAGGGGCTTCGCCGAGCTCGCCGACGGCCGCGTCATCGCCCTCGACGCCGTCGTCCTCGCCACCGGCTACCGCAGCAATGTGCCCCAATGGCTCCAGGGAAATGACTTCTTCAACAAGGACGGGTACCCAAAGACGGCGTTCCCCAACGGATGGAAGGGTGAGTCGGGGCTGTACGCCGTCGGCTTCACCCGGCGCGGCCTCTCCGGCGCCTCCGCCGACGCCATGCGCGCCGCCAAGGACCTTGCCAGGGTGTGGAAGGAGGCGACGAAGCCAACCAAGAAGAGCACGGCGTGCCACCGGAGGTGCATCTCCGTCATCTTCTAAGCCGCCGCCGGCCACCGTTGCTACTGCTACTCGATCCATCAATCCCCTTGGTTAAATTCGTTGTTGATTAAGATTGGTTCTTTCTTTCTTTCTTGAAGAATTAAATTAAATTAAGCTAGGAGAGTGTGATCATACTACGTTGCTAGGTTAGTGATATTGTAGGACACAGCAGTGAGAGTGGGAGAGTATAAAAAAAAATAAGGTTAATTATTTGAGAGTTGAAAAAAAAAGAAAGAAAAAGAGAGACAAGGTGGAGCCCTCTCGTCAGTGGGAAGTGAGAGCCCTAGGGGATTTTTACTGCAGCTAGAGGCGTCTGGTGTACAGAAGAAGTGAGCTTGCCAGTTGATGGAAGATGAGGCTCTTGTCATTGACCTATTGTTTCTTTTGTTCTATATATGTATGTATAATCTTATATAATATCCCCTACTAGTAGTATGTAGTGGCCTTAATTAATCTGATGATGATGATTAGTAGTAGTAGTAGTAGTAAGCACCTCTTAGTTTAGTTGTTACTGCCTCTCCAGTGACAGTTCTTTTGTAATCTTTGCAATCACCTTTTGTAACTCCCTTTGTATAACAACTCTTTACTTGAGAGTTGAGAGTGAATATATATATAACTAGTGTAAT]
[+] EMBL AK068976 [AATCACTTGCAAAACCAACACAAACACAACACAAGCAACACACACAAGCTTCTCCTTCCAAAATACTCCTCAACTAGCTAAGTCTAAGCTTCATCGATCCAAGCAAGCTAAGCCATGGTGCTCCAACACAGTGATCGCATGGACAGCCTCTTCTCCCCACAGACGAGCTGGGTGAGCGGCCCGATCATCGTGGGCGCCGGGCCGTCGGGGCTCGCCGTGGCGGCGAGCCTGCGGGAGCAGGGCGTGCCGTTCACCATGCTGGAGCGCGCCGACTGCATCGCGTCGCTGTGGCAGAAGCGCACCTACGACCGCCTCAAGCTCCACCTCCCCAAGCAGTTCTGCGAGCTCCCGCGCATGGCGTTCCCGGCGCACTACCCGGAGTACCCGACGCGCCGCCAGTTCATCGACTACCTCGAGGACTACGCCGCCGCGTTCGACATCAACCCGCTCTTCGGCCACACCGTGCTCTCCGCGCGCTACGACGAGACGTCCGGCCTGTGGCGCGTGCGCGCCTCCTCGTCCGCCGGCGCCGAGATGGAGTACATTGGCAGCTGGCTCGTCGTCGCCACCGGCGAGAACGCCGAGAGCGTCGTCCCGGACATCCCCGGGATCGATGGGTTCGGCGGCGAGGTGGTGCACGTCGCCGACTACAAGTCCGGCGAGGCGTACCGCGGCAAGAGGGTGCTCGTCGTCGGGTGCGGCAACTCCGGTATGGAGGTGTCGCTGGACCTGTGCGACCACGGCGCACGCCCGGCGATGGTGGTGCGCGACGCCGTCCACGTCCTCCCCCGGGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGCTGCTCATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGCTCGTCCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCGCCACCGGCCCGCTCGAGCTCAAGAACACCACCGGCCGCACCCCGGTGCTCGACTACGGCGCCCTCGCCAGGATCCGCTCCGGCGAGATCACCGTCGTCCCCGGCGTCGCCCGCTTCGGCAGGGGCTTCGCCGAGCTCGCCGACGGCCGCGTCATCGCCCTCGACGCCGTCGTCCTCGCCACCGGCTACCGCAGCAATGTGCCCCAATGGCTCCAGGGAAATGACTTCTTCAACAAGGACGGGTACCCAAAGACGGCGTTCCCCAACGGATGGAAGGGTGAGTCGGGGCTGTACGCCGTCGGCTTCACCCGGCGCGGCCTCTCCGGCGCCTCCGCCGACGCCATGCGCGCCGCCAAGGACCTTGCCAGGGTGTGGAAGGAGGCGACGAAGCCAACCAAGAAGAGCACGGCGTGCCACCGGAGGTGCATCTCCGTCATCTTCTAAGCCGCCGCCGGCCACCGTTGCTACTGCTACTCGATCCATCAATCCCCTTGGTTAAATTCGTTGTTGATTAAGATTGGTTCTTTCTTTCTTTCTTGAAGAATTAAATTAAATTAAGCTAGGAGAGTGTGATCATACTACGTTGCTAGGTTAGTGATATTGTAGGACACAGCAGTGAGAGTGGGAGAGTATAAAAAAAAATAAGGTTAATTATTTGAGAGTTGAAAAAAAAAGAAAGAAAAAGAGAGACAAGGTGGAGCCCTCTCGTCAGTGGGAAGTGAGAGCCCTAGGGGATTTTTACTGCAGCTAGAGGCGTCTGGTGTACAGAAGAAGTGAGCTTGCCAGTTGATGGAAGATGAGGCTCTTGTCATTGACCTATTGTTTCTTTTGTTCTATATATGTATGTATAATCTTATATAATATCCCCTACTAGTAGTATGTAGTGGCCTTAATTAATCTGATGATGATGATTAGTAGTAGTAGTAGTAGTAAGCACCTCTTAGTTTAGTTGTTACTGCCTCTCCAGTGACAGTTCTTTTGTAATCTTTGCAATCACCTTTTGTAACTCCCTTTGTATAACAACTCTTTACTTGAGAGTTGAGAGTGAATATATATATAACTAGTGTAAT]
consensusID : consensus_2474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[TAAAAATTTGAATTCAAATTTAAAATTTGCGGGCGAAATTTCTGAAAAAGAGAACAAAAACAGATAGCAACACTCGCTCTACTCGGCAGCCATACAAGCTGCAGCTGCTGCATCACAAATTCGCTGCAAGCTGCAGCAGCAATTCTGAACACACCCACTGACAGCAAGTCTCCACAGTCCAAGAACAAATATAGCAGCGAGGTGATGCATGTCGCGGTCTACAAGTCCGGCGAGGCATACCGCGGCAAGAAGGTGCTCGTCGTCGGGTGCGGCAACTCCGGCATGGTGGTGTCGCTCGACCTGTGCGACCACAGCGCCCTCCCGGCGATGGTGGTGCGCGACGCCGTCCACGTCCTCCCTGGCGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGTTGCTCATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGTTCGTCCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCACCACTGGGCGGCTGGGGGCGATGGGGCGACGGCTTGGAGGGGGGCGTGCAGCGCCGGCGGTACGGCGACCGGCGTCGAGGCGGTGACTGGCGACTCGGCGAGATAGCGATTT]
[-] EMBL AK111025 [TAAAAATTTGAATTCAAATTTAAAATTTGCGGGCGAAATTTCTGAAAAAGAGAACAAAAACAGATAGCAACACTCGCTCTACTCGGCAGCCATACAAGCTGCAGCTGCTGCATCACAAATTCGCTGCAAGCTGCAGCAGCAATTCTGAACACACCCACTGACAGCAAGTCTCCACAGTCCAAGAACAAATATAGCAGCGAGGTGATGCATGTCGCGGTCTACAAGTCCGGCGAGGCATACCGCGGCAAGAAGGTGCTCGTCGTCGGGTGCGGCAACTCCGGCATGGTGGTGTCGCTCGACCTGTGCGACCACAGCGCCCTCCCGGCGATGGTGGTGCGCGACGCCGTCCACGTCCTCCCTGGCGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGTTGCTCATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGTTCGTCCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCACCACTGGGCGGCTGGGGGCGATGGGGCGACGGCTTGGAGGGGGGCGTGCAGCGCCGGCGGTACGGCGACCGGCGTCGAGGCGGTGACTGGCGACTCGGCGAGATAGCGATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2474#0 AATCACTTGCAAAACCAACACAAACACAACACAAGCAACACACACAAGCTTCTCCTTCCA 60
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 AAATACTCCTCAACTAGCTAAGTCTAAGCTTCATCGATCCAAGCAAGCTAAGCCATGGTG 120
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 CTCCAACACAGTGATCGCATGGACAGCCTCTTCTCCCCACAGACGAGCTGGGTGAGCGGC 180
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 CCGATCATCGTGGGCGCCGGGCCGTCGGGGCTCGCCGTGGCGGCGAGCCTGCGGGAGCAG 240
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 GGCGTGCCGTTCACCATGCTGGAGCGCGCCGACTGCATCGCGTCGCTGTGGCAGAAGCGC 300
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 ACCTACGACCGCCTCAAGCTCCACCTCCCCAAGCAGTTCTGCGAGCTCCCGCGCATGGCG 360
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 TTCCCGGCGCACTACCCGGAGTACCCGACGCGCCGCCAGTTCATCGACTACCTCGAGGAC 420
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 TACGCCGCCGCGTTCGACATCAACCCGCTCTTCGGCCACACCGTGCTCTCCGCGCGCTAC 480
consensus_2474#1 TAAAAATTTGAATTCAAATTTAA---AATTTGCGGGCGAAA-----TTTCTGAAAAAGAG 52
** * *** * * ** * * *** * * * ** * *
consensus_2474#0 GACGAGACGTCCGGCCTGTGGCGCGTGCGCGCCTCCTCGTCCGCCGGCGCCGAGATGGAG 540
consensus_2474#1 AACAAAAA---CAGATAGCAACACTCGC---TCTACTCGGCAGCCATA--CAAGCTGCAG 104
** * * * * * * * ** ** **** * *** * ** ** **
consensus_2474#0 TACATTGGCAGCTGGCTCGTCGTCGCCACCGGCGAGAACGCCGAGAGCGTCGTC---CCG 597
consensus_2474#1 CTGCTGCATCACAAATTCGCTGCAAGCTGCAGCAGCAATTCTGAACACACCCACTGACAG 164
* * *** * * * ** ** * ** * * * * *
consensus_2474#0 GACATCCCCGGGATC----GATGGGTTCGGCGGCGAGGTGGTGCACGTCGCCGACTACAA 653
consensus_2474#1 CAAGTCTCCACAGTCCAAGAACAAATATAGCAGCGAGGTGATGCATGTCGCGGTCTACAA 224
* ** ** ** * * ** ******** **** ***** * ******
consensus_2474#0 GTCCGGCGAGGCGTACCGCGGCAAGAGGGTGCTCGTCGTCGGGTGCGGCAACTCCGGTAT 713
consensus_2474#1 GTCCGGCGAGGCATACCGCGGCAAGAAGGTGCTCGTCGTCGGGTGCGGCAACTCCGGCAT 284
************ ************* ****************************** **
consensus_2474#0 GGAGGTGTCGCTGGACCTGTGCGACCACGGCGCACGCCCGGCGATGGTGGTGCGCGACGC 773
consensus_2474#1 GGTGGTGTCGCTCGACCTGTGCGACCACAGCGCCCTCCCGGCGATGGTGGTGCGCGACGC 344
** ********* *************** **** * ************************
consensus_2474#0 CGTCCACGTCCTCCCCCGGGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGCTGCT 833
consensus_2474#1 CGTCCACGTCCTCCCTGGCGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGTTGCT 404
*************** * ************************************ ****
consensus_2474#0 CATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGCTCGT 893
consensus_2474#1 CATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGATCCTCGTCCTCCTCGCCTGGTTCGT 464
******************************************************* ****
consensus_2474#0 CCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCGCCACCGGCCCGCTCGAGCTCAA 953
consensus_2474#1 CCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCACCACTGGGCGGCT-GGGGGCGA 523
************************************* **** ** * *** * * * *
consensus_2474#0 GAACACCACCGGCCGCACCCCGGTGCTCGACTACGGCGCCCTCGCCAGGATCCGCTCCGG 1013
consensus_2474#1 TGGGGCGACGGCTTGGAGGGGGGCGTGCAGCGCCGGCGGTACGGC---GACCGGCGTCGA 580
* ** * * * ** * * * ***** ** ** * ** **
consensus_2474#0 CGAGATCACCGTCGTCCCCG-GCGTCGCCCGCTTCGGCAGGGGCTTCGCCGAGCTCGCCG 1072
consensus_2474#1 GGCGGTGACTGGCGACTCGGCGAGATAGCGATTT-------------------------- 614
* * * ** * ** * * * * * * **
consensus_2474#0 ACGGCCGCGTCATCGCCCTCGACGCCGTCGTCCTCGCCACCGGCTACCGCAGCAATGTGC 1132
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 CCCAATGGCTCCAGGGAAATGACTTCTTCAACAAGGACGGGTACCCAAAGACGGCGTTCC 1192
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 CCAACGGATGGAAGGGTGAGTCGGGGCTGTACGCCGTCGGCTTCACCCGGCGCGGCCTCT 1252
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 CCGGCGCCTCCGCCGACGCCATGCGCGCCGCCAAGGACCTTGCCAGGGTGTGGAAGGAGG 1312
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 CGACGAAGCCAACCAAGAAGAGCACGGCGTGCCACCGGAGGTGCATCTCCGTCATCTTCT 1372
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 AAGCCGCCGCCGGCCACCGTTGCTACTGCTACTCGATCCATCAATCCCCTTGGTTAAATT 1432
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 CGTTGTTGATTAAGATTGGTTCTTTCTTTCTTTCTTGAAGAATTAAATTAAATTAAGCTA 1492
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 GGAGAGTGTGATCATACTACGTTGCTAGGTTAGTGATATTGTAGGACACAGCAGTGAGAG 1552
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 TGGGAGAGTATAAAAAAAAATAAGGTTAATTATTTGAGAGTTGAAAAAAAAAGAAAGAAA 1612
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 AAGAGAGACAAGGTGGAGCCCTCTCGTCAGTGGGAAGTGAGAGCCCTAGGGGATTTTTAC 1672
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 TGCAGCTAGAGGCGTCTGGTGTACAGAAGAAGTGAGCTTGCCAGTTGATGGAAGATGAGG 1732
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 CTCTTGTCATTGACCTATTGTTTCTTTTGTTCTATATATGTATGTATAATCTTATATAAT 1792
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 ATCCCCTACTAGTAGTATGTAGTGGCCTTAATTAATCTGATGATGATGATTAGTAGTAGT 1852
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 AGTAGTAGTAAGCACCTCTTAGTTTAGTTGTTACTGCCTCTCCAGTGACAGTTCTTTTGT 1912
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 AATCTTTGCAATCACCTTTTGTAACTCCCTTTGTATAACAACTCTTTACTTGAGAGTTGA 1972
consensus_2474#1 ------------------------------------------------------------
consensus_2474#0 GAGTGAATATATATATAACTAGTGTAAT 2000
consensus_2474#1 ----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||