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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2476 cluster # 2476       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2476#0 length = 810 sequences # 1  
consensus_2476#1 length = 487 sequences # 1  

consensusID : consensus_2476#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 810
fasta sequence
                              [AAGGTTCCATTTAAGGACCGACACTCAGGCTCAAGAAACCACAGAGGAAATTATAACACTGACAAGGGTGACCATAATGATAAAGAAGGAAATTGGATAAATTCAAAACAACGAAATCCTGGCCGCAGCTATGGACGTAGCCACTCAGAGAGGTCTGGCATACGATCGGATAGACAAGCAGCAGATGAAAACCAGTATGATAGGCAGCGGCGATCTTATAGAAATGATTCATACAGGCATGAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACGCAGACCAGGGAACATGACACATGGGGATCCATCACCATCTGCTTCAAATGGTATCGGTGCCCTTTCTGGGTCTTCAGCTCCATATTTCATGTACTACTCATGTGAACCAGGCACAAATCACGGTTCTTCATCTGAACCACTTGAATTTGGTTCACTTGGGCCAGTTCCTACAGCTGATGGTGGTGACATGCCACGACCCACTCGCCAAGCAATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTAGGGGTGGCTCCTCTCATTCATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGTCCGTTCTGATCTCCTAATCTGATGGCTGGTCGCATTGAATCCGGTGCTTATGGTTGGTTTGGTGATGAGCTACCCAGAAAGCAATTGTGCTCTGGCAGCTGATACCGAATACTTTTAGCGGCCTCACCAGAATTTACTTCAGTCCGACGATACATCAGATTTATCATAGCACTACCTGATATCGGCAGCACCAACCTTCTGATTTCTGAANCAGCCAT]

[+] EMBL CB667454             [AAGGTTCCATTTAAGGACCGACACTCAGGCTCAAGAAACCACAGAGGAAATTATAACACTGACAAGGGTGACCATAATGATAAAGAAGGAAATTGGATAAATTCAAAACAACGAAATCCTGGCCGCAGCTATGGACGTAGCCACTCAGAGAGGTCTGGCATACGATCGGATAGACAAGCAGCAGATGAAAACCAGTATGATAGGCAGCGGCGATCTTATAGAAATGATTCATACAGGCATGAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACGCAGACCAGGGAACATGACACATGGGGATCCATCACCATCTGCTTCAAATGGTATCGGTGCCCTTTCTGGGTCTTCAGCTCCATATTTCATGTACTACTCATGTGAACCAGGCACAAATCACGGTTCTTCATCTGAACCACTTGAATTTGGTTCACTTGGGCCAGTTCCTACAGCTGATGGTGGTGACATGCCACGACCCACTCGCCAAGCAATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTAGGGGTGGCTCCTCTCATTCATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGTCCGTTCTGATCTCCTAATCTGATGGCTGGTCGCATTGAATCCGGTGCTTATGGTTGGTTTGGTGATGAGCTACCCAGAAAGCAATTGTGCTCTGGCAGCTGATACCGAATACTTTTAGCGGCCTCACCAGAATTTACTTCAGTCCGACGATACATCAGATTTATCATAGCACTACCTGATATCGGCAGCACCAACCTTCTGATTTCTGAANCAGCCAT]


>consensus_2476#0 AAGGTTCCATTTAAGGACCGACACTCAGGCTCAAGAAACCACAGAGGAAATTATAACACT GACAAGGGTGACCATAATGATAAAGAAGGAAATTGGATAAATTCAAAACAACGAAATCCT GGCCGCAGCTATGGACGTAGCCACTCAGAGAGGTCTGGCATACGATCGGATAGACAAGCA GCAGATGAAAACCAGTATGATAGGCAGCGGCGATCTTATAGAAATGATTCATACAGGCAT GAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACGCAGACCAGGGAACATGACA CATGGGGATCCATCACCATCTGCTTCAAATGGTATCGGTGCCCTTTCTGGGTCTTCAGCT CCATATTTCATGTACTACTCATGTGAACCAGGCACAAATCACGGTTCTTCATCTGAACCA CTTGAATTTGGTTCACTTGGGCCAGTTCCTACAGCTGATGGTGGTGACATGCCACGACCC ACTCGCCAAGCAATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTAGGGGTGGC TCCTCTCATTCATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGTCCGTTCTG ATCTCCTAATCTGATGGCTGGTCGCATTGAATCCGGTGCTTATGGTTGGTTTGGTGATGA GCTACCCAGAAAGCAATTGTGCTCTGGCAGCTGATACCGAATACTTTTAGCGGCCTCACC AGAATTTACTTCAGTCCGACGATACATCAGATTTATCATAGCACTACCTGATATCGGCAG CACCAACCTTCTGATTTCTGAANCAGCCAT



consensusID : consensus_2476#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence
                              [CGGGTGGCATCGAATCCGGTGCTTATGGTGGGTTTGGTGATGAGCTACCCAGAAAGCAATAGTGTTGTGGCAGCAGATACCGAATAATTTTAGCGGCCTCCCCAGAATTTATTTCAGTCGGCCGATACATCAGATTTTTCATAGCACTACTTGATATTGGCAGCACCACCCTTCTGATTTTTGAACAACCCATCCAACTTGGAGCCCCGAATATTTTCTTGAAGAATTACCCTCAAGGATAAGCTGGAGGATTATTTGAGAGGGCCCCCCTCCTTTGTAATATTACCGCCAAAAGAAGATTATTAATGCTGAAGAAAGGAGAAGAATTGGCTTTTCACCCTCGAAAAGCAGGGAAAATTATTGGTGGACAAAAGTAATTGAAGGAAGGAGATATTTTTTTGTTTTCAGGTAGAAGAGAGATGGTGTACTTTAGTTTACATCCAACAAAACTTTTCACATCAGATGTAGTAGATTTTAGGGGAATCCT]

[-] EMBL CB667455             [CGGGTGGCATCGAATCCGGTGCTTATGGTGGGTTTGGTGATGAGCTACCCAGAAAGCAATAGTGTTGTGGCAGCAGATACCGAATAATTTTAGCGGCCTCCCCAGAATTTATTTCAGTCGGCCGATACATCAGATTTTTCATAGCACTACTTGATATTGGCAGCACCACCCTTCTGATTTTTGAACAACCCATCCAACTTGGAGCCCCGAATATTTTCTTGAAGAATTACCCTCAAGGATAAGCTGGAGGATTATTTGAGAGGGCCCCCCTCCTTTGTAATATTACCGCCAAAAGAAGATTATTAATGCTGAAGAAAGGAGAAGAATTGGCTTTTCACCCTCGAAAAGCAGGGAAAATTATTGGTGGACAAAAGTAATTGAAGGAAGGAGATATTTTTTTGTTTTCAGGTAGAAGAGAGATGGTGTACTTTAGTTTACATCCAACAAAACTTTTCACATCAGATGTAGTAGATTTTAGGGGAATCCT]


>consensus_2476#1 CGGGTGGCATCGAATCCGGTGCTTATGGTGGGTTTGGTGATGAGCTACCCAGAAAGCAAT AGTGTTGTGGCAGCAGATACCGAATAATTTTAGCGGCCTCCCCAGAATTTATTTCAGTCG GCCGATACATCAGATTTTTCATAGCACTACTTGATATTGGCAGCACCACCCTTCTGATTT TTGAACAACCCATCCAACTTGGAGCCCCGAATATTTTCTTGAAGAATTACCCTCAAGGAT AAGCTGGAGGATTATTTGAGAGGGCCCCCCTCCTTTGTAATATTACCGCCAAAAGAAGAT TATTAATGCTGAAGAAAGGAGAAGAATTGGCTTTTCACCCTCGAAAAGCAGGGAAAATTA TTGGTGGACAAAAGTAATTGAAGGAAGGAGATATTTTTTTGTTTTCAGGTAGAAGAGAGA TGGTGTACTTTAGTTTACATCCAACAAAACTTTTCACATCAGATGTAGTAGATTTTAGGG GAATCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2476#0      AAGGTTCCATTTAAGGACCGACACTCAGGCTCAAGAAACCACAGAGGAAATTATAACACT 60
consensus_2476#1      ------------------------------------------------------------
                                                                                  

consensus_2476#0      GACAAGGGTGACCATAATGATAAAGAAGGAAATTGGATAAATTCAAAACAACGAAATCCT 120
consensus_2476#1      ------------------------------------------------------------
                                                                                  

consensus_2476#0      GGCCGCAGCTATGGACGTAGCCACTCAGAGAGGTCTGGCATACGATCGGATAGACAAGCA 180
consensus_2476#1      -------------------------------CGGGTGGCATCGAATCCGGTGCTTATGGT 29
                                                      *  ******   *** * *    * *  

consensus_2476#0      GCAGATGAAAACCAGTATGATAGGCAGCGGCGATCTTATAGAAATGATTCATACAGGCAT 240
consensus_2476#1      GGGTTTGGTGATGAGCTACCCAGAAAGCAATAGTGTTGTGGCAGCAGATACCGAATAATT 89
                      *    **   *  **      **  ***     * ** * * *     *     *    *

consensus_2476#0      GAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACG-CAGACCAGGGAACATGAC 299
consensus_2476#1      TTAGCGGCCTCCCCAGAATTTATTTCAGTCGGCCG-ATACATCAGATTTTTCATAGCACT 148
                          * * * *** *   * *   ***     *   ****  ****      *       

consensus_2476#0      ACATGGGGATC-CATCACCATCTGCTTCAAATGGTATCGGTGC--CCTTTCTGGGTCTTC 356
consensus_2476#1      ACTTGATATTGGCAGCACCACCCTTCTGATTTTTGAACAACCCATCCAACTTGGAGCCCC 208
                      ** **    *  ** ***** *    * *  *   * *    *  **    ***  *  *

consensus_2476#0      AGCTCCATATTTCATGTACTACTCATGTGAACCAGGCACAAATCACGGTTCTTCATCTGA 416
consensus_2476#1      GAATATTTTCTTGAAGAATTACCCTCAAGGATAAGCTGGAG-----GATTATTTGAGAGG 263
                         *   *  ** * * * *** *    * *  **    *      * ** **     * 

consensus_2476#0      ACCACTTGAATTTGGTTCACTTGGGCCAGTTCCT-ACAGCTGATGGTGGTGACATGCCAC 475
consensus_2476#1      GCCCCCCTCCTTTGTAATATTACCGCCAAAAGAAGATTATTAATGCTGAAGAAAGGAGAA 323
                       ** *     ****    * *   ****       *    * *** **  ** * *  * 

consensus_2476#0      GACCCA-CTCGCCAAGC--AATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTA 532
consensus_2476#1      GAATTGGCTTTTCACCCTCGAAAAGCAGGGAAAATTATTGGTGGACAAAAGTA--ATTGA 381
                      **     **   **  *   *    **  **   **** **   *   * **   *** *

consensus_2476#0      GGGGTGGCTCCTCTCATTCATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGT 592
consensus_2476#1      AGGAAGGAGATATTTTTTTGTTTTCAGGTAGAAGAGAGATGGTGTACTTTAGTTTACATC 441
                       **  **      *  **  * * * * *  *  *          *   * *     *  

consensus_2476#0      CCGTTCTGATCTCCTAATCTGATGGCTGGTCGCATTGAATCCGGTGCTTATGGTTGGTTT 652
consensus_2476#1      CAACAAAACTTTTCACATCAGATG--TAGTAGATTTTAGGGGAATCCT------------ 487
                      *        * * *  *** ****  * ** *  ** *      * **            

consensus_2476#0      GGTGATGAGCTACCCAGAAAGCAATTGTGCTCTGGCAGCTGATACCGAATACTTTTAGCG 712
consensus_2476#1      ------------------------------------------------------------
                                                                                  

consensus_2476#0      GCCTCACCAGAATTTACTTCAGTCCGACGATACATCAGATTTATCATAGCACTACCTGAT 772
consensus_2476#1      ------------------------------------------------------------
                                                                                  

consensus_2476#0      ATCGGCAGCACCAACCTTCTGATTTCTGAANCAGCCAT 810
consensus_2476#1      --------------------------------------
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)