These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 810 fasta sequence [AAGGTTCCATTTAAGGACCGACACTCAGGCTCAAGAAACCACAGAGGAAATTATAACACTGACAAGGGTGACCATAATGATAAAGAAGGAAATTGGATAAATTCAAAACAACGAAATCCTGGCCGCAGCTATGGACGTAGCCACTCAGAGAGGTCTGGCATACGATCGGATAGACAAGCAGCAGATGAAAACCAGTATGATAGGCAGCGGCGATCTTATAGAAATGATTCATACAGGCATGAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACGCAGACCAGGGAACATGACACATGGGGATCCATCACCATCTGCTTCAAATGGTATCGGTGCCCTTTCTGGGTCTTCAGCTCCATATTTCATGTACTACTCATGTGAACCAGGCACAAATCACGGTTCTTCATCTGAACCACTTGAATTTGGTTCACTTGGGCCAGTTCCTACAGCTGATGGTGGTGACATGCCACGACCCACTCGCCAAGCAATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTAGGGGTGGCTCCTCTCATTCATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGTCCGTTCTGATCTCCTAATCTGATGGCTGGTCGCATTGAATCCGGTGCTTATGGTTGGTTTGGTGATGAGCTACCCAGAAAGCAATTGTGCTCTGGCAGCTGATACCGAATACTTTTAGCGGCCTCACCAGAATTTACTTCAGTCCGACGATACATCAGATTTATCATAGCACTACCTGATATCGGCAGCACCAACCTTCTGATTTCTGAANCAGCCAT] [+] EMBL CB667454 [AAGGTTCCATTTAAGGACCGACACTCAGGCTCAAGAAACCACAGAGGAAATTATAACACTGACAAGGGTGACCATAATGATAAAGAAGGAAATTGGATAAATTCAAAACAACGAAATCCTGGCCGCAGCTATGGACGTAGCCACTCAGAGAGGTCTGGCATACGATCGGATAGACAAGCAGCAGATGAAAACCAGTATGATAGGCAGCGGCGATCTTATAGAAATGATTCATACAGGCATGAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACGCAGACCAGGGAACATGACACATGGGGATCCATCACCATCTGCTTCAAATGGTATCGGTGCCCTTTCTGGGTCTTCAGCTCCATATTTCATGTACTACTCATGTGAACCAGGCACAAATCACGGTTCTTCATCTGAACCACTTGAATTTGGTTCACTTGGGCCAGTTCCTACAGCTGATGGTGGTGACATGCCACGACCCACTCGCCAAGCAATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTAGGGGTGGCTCCTCTCATTCATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGTCCGTTCTGATCTCCTAATCTGATGGCTGGTCGCATTGAATCCGGTGCTTATGGTTGGTTTGGTGATGAGCTACCCAGAAAGCAATTGTGCTCTGGCAGCTGATACCGAATACTTTTAGCGGCCTCACCAGAATTTACTTCAGTCCGACGATACATCAGATTTATCATAGCACTACCTGATATCGGCAGCACCAACCTTCTGATTTCTGAANCAGCCAT] consensusID : consensus_2476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [CGGGTGGCATCGAATCCGGTGCTTATGGTGGGTTTGGTGATGAGCTACCCAGAAAGCAATAGTGTTGTGGCAGCAGATACCGAATAATTTTAGCGGCCTCCCCAGAATTTATTTCAGTCGGCCGATACATCAGATTTTTCATAGCACTACTTGATATTGGCAGCACCACCCTTCTGATTTTTGAACAACCCATCCAACTTGGAGCCCCGAATATTTTCTTGAAGAATTACCCTCAAGGATAAGCTGGAGGATTATTTGAGAGGGCCCCCCTCCTTTGTAATATTACCGCCAAAAGAAGATTATTAATGCTGAAGAAAGGAGAAGAATTGGCTTTTCACCCTCGAAAAGCAGGGAAAATTATTGGTGGACAAAAGTAATTGAAGGAAGGAGATATTTTTTTGTTTTCAGGTAGAAGAGAGATGGTGTACTTTAGTTTACATCCAACAAAACTTTTCACATCAGATGTAGTAGATTTTAGGGGAATCCT] [-] EMBL CB667455 [CGGGTGGCATCGAATCCGGTGCTTATGGTGGGTTTGGTGATGAGCTACCCAGAAAGCAATAGTGTTGTGGCAGCAGATACCGAATAATTTTAGCGGCCTCCCCAGAATTTATTTCAGTCGGCCGATACATCAGATTTTTCATAGCACTACTTGATATTGGCAGCACCACCCTTCTGATTTTTGAACAACCCATCCAACTTGGAGCCCCGAATATTTTCTTGAAGAATTACCCTCAAGGATAAGCTGGAGGATTATTTGAGAGGGCCCCCCTCCTTTGTAATATTACCGCCAAAAGAAGATTATTAATGCTGAAGAAAGGAGAAGAATTGGCTTTTCACCCTCGAAAAGCAGGGAAAATTATTGGTGGACAAAAGTAATTGAAGGAAGGAGATATTTTTTTGTTTTCAGGTAGAAGAGAGATGGTGTACTTTAGTTTACATCCAACAAAACTTTTCACATCAGATGTAGTAGATTTTAGGGGAATCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2476#0 AAGGTTCCATTTAAGGACCGACACTCAGGCTCAAGAAACCACAGAGGAAATTATAACACT 60 consensus_2476#1 ------------------------------------------------------------ consensus_2476#0 GACAAGGGTGACCATAATGATAAAGAAGGAAATTGGATAAATTCAAAACAACGAAATCCT 120 consensus_2476#1 ------------------------------------------------------------ consensus_2476#0 GGCCGCAGCTATGGACGTAGCCACTCAGAGAGGTCTGGCATACGATCGGATAGACAAGCA 180 consensus_2476#1 -------------------------------CGGGTGGCATCGAATCCGGTGCTTATGGT 29 * ****** *** * * * * consensus_2476#0 GCAGATGAAAACCAGTATGATAGGCAGCGGCGATCTTATAGAAATGATTCATACAGGCAT 240 consensus_2476#1 GGGTTTGGTGATGAGCTACCCAGAAAGCAATAGTGTTGTGGCAGCAGATACCGAATAATT 89 * ** * ** ** *** * ** * * * * * * consensus_2476#0 GAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACG-CAGACCAGGGAACATGAC 299 consensus_2476#1 TTAGCGGCCTCCCCAGAATTTATTTCAGTCGGCCG-ATACATCAGATTTTTCATAGCACT 148 * * * *** * * * *** * **** **** * consensus_2476#0 ACATGGGGATC-CATCACCATCTGCTTCAAATGGTATCGGTGC--CCTTTCTGGGTCTTC 356 consensus_2476#1 ACTTGATATTGGCAGCACCACCCTTCTGATTTTTGAACAACCCATCCAACTTGGAGCCCC 208 ** ** * ** ***** * * * * * * * ** *** * * consensus_2476#0 AGCTCCATATTTCATGTACTACTCATGTGAACCAGGCACAAATCACGGTTCTTCATCTGA 416 consensus_2476#1 GAATATTTTCTTGAAGAATTACCCTCAAGGATAAGCTGGAG-----GATTATTTGAGAGG 263 * * ** * * * *** * * * ** * * ** ** * consensus_2476#0 ACCACTTGAATTTGGTTCACTTGGGCCAGTTCCT-ACAGCTGATGGTGGTGACATGCCAC 475 consensus_2476#1 GCCCCCCTCCTTTGTAATATTACCGCCAAAAGAAGATTATTAATGCTGAAGAAAGGAGAA 323 ** * **** * * **** * * *** ** ** * * * consensus_2476#0 GACCCA-CTCGCCAAGC--AATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTA 532 consensus_2476#1 GAATTGGCTTTTCACCCTCGAAAAGCAGGGAAAATTATTGGTGGACAAAAGTA--ATTGA 381 ** ** ** * * ** ** **** ** * * ** *** * consensus_2476#0 GGGGTGGCTCCTCTCATTCATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGT 592 consensus_2476#1 AGGAAGGAGATATTTTTTTGTTTTCAGGTAGAAGAGAGATGGTGTACTTTAGTTTACATC 441 ** ** * ** * * * * * * * * * * * consensus_2476#0 CCGTTCTGATCTCCTAATCTGATGGCTGGTCGCATTGAATCCGGTGCTTATGGTTGGTTT 652 consensus_2476#1 CAACAAAACTTTTCACATCAGATG--TAGTAGATTTTAGGGGAATCCT------------ 487 * * * * *** **** * ** * ** * * ** consensus_2476#0 GGTGATGAGCTACCCAGAAAGCAATTGTGCTCTGGCAGCTGATACCGAATACTTTTAGCG 712 consensus_2476#1 ------------------------------------------------------------ consensus_2476#0 GCCTCACCAGAATTTACTTCAGTCCGACGATACATCAGATTTATCATAGCACTACCTGAT 772 consensus_2476#1 ------------------------------------------------------------ consensus_2476#0 ATCGGCAGCACCAACCTTCTGATTTCTGAANCAGCCAT 810 consensus_2476#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||