These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence [CTCGGCGCAGACTGCAGTGCTCTCTGTAAATGGTATTTTCTCCTTGTGGAGAGATTGTTGATTTGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGGAGAGGGAGTGTGCTTATATTGCTAAAAGGCAAATAAATGGTTTTGAGCTTCAAGGAAAGAGACTTGCTGTTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAGATTGGGGCATCGAAGAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGGTTGACCTTGCAATGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACGTCTAAATCGAGGCTTTGCATTTGTGCGATTTTCTTCTCATGCAGTATTGACCAATATATAGCCTCTTGTCTTAAAACAATCTTTATTGGATAAAACCATCTGACTGAAATATAGGGATATGTATAAAGTTAGCTTCTTTCTCTTCTCCTGGATTCCTGATGAATGATCCTATCCTTTTGTGGTGTGCCTTAAATCTATCTGCTACAAAAGAAGCGCATTATCAAGTAATTGCATATCTAAGTAATTTTGTCTCCTTTATGAGATGANGGGCCAGACGATGGTGCATTGTCACAATGGTACCAACATATNCTTATCATCTACTGACAAGAAAATCAATCCATATCNTTTACTCAGNGGTGGTTATGACGTAATGGAATGCACTTTTATCATCTGATCNTTCAAATGACTGGATTGGNGNTGCAAAGGGCATCTTCTATNGGTTAGGTTTCATATGGAAAGG] [+] EMBL CA765176 [CTCGGCGCAGACTGCAGTGCTCTCTGTAAATGGTATTTTCTCCTTGTGGAGAGATTGTTGATTTGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGGAGAGGGAGTGTGCTTATATTGCTAAAAGGCAAATAAATGGTTTTGAGCTTCAAGGAAAGAGACTTGCTGTTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAGATTGGGGCATCGAAGAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGGTTGACCTTGCAATGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACGTCTAAATCGAGGCTTTGCATTTGTGCGATTTTCTTCTCATGCAGTATTGACCAATATATAGCCTCTTGTCTTAAAACAATCTTTATTGGATAAAACCATCTGACTGAAATATAGGGATATGTATAAAGTTAGCTTCTTTCTCTTCTCCTGGATTCCTGATGAATGATCCTATCCTTTTGTGGTGTGCCTTAAATCTATCTGCTACAAAAGAAGCGCATTATCAAGTAATTGCATATCTAAGTAATTTTGTCTCCTTTATGAGATGANGGGCCAGACGATGGTGCATTGTCACAATGGTACCAACATATNCTTATCATCTACTGACAAGAAAATCAATCCATATCNTTTACTCAGNGGTGGTTATGACGTAATGGAATGCACTTTTATCATCTGATCNTTCAAATGACTGGATTGGNGNTGCAAAGGGCATCTTCTATNGGTTAGGTTTCATATGGAAAGG] consensusID : consensus_2484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [TTTTTTTTTTGGTTGCTCGTGGGGGATTTCAGGAGAAGAGGGGGGCGGCGTCGCATGGCGACTACCACGAGCAAGATCGCCGGGTGAAAGGCGCCGAGGTGTTCGTCGGCGGGTTGCCGCGGTCGGTGACGGAGCGGGCGCTCCGAGAGGTATTTTCTCCTTGTGGAGAGATTGTTGATTTGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGGAGAGGGAGTGTGCTTATATTGCTAAAAGGCTAATAAATGGTTTTGAGCTTCAAGGAAAGAGACTTGCTGCTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAGATTGGGGCATCGAAAAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGGTTGACCTTGCACTGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACCTCTAAATCGAGGCTTTGCATTTGTGCGATTTTCTTCTCATGCAGGAAGGCTTATTCCTTATTTTTGGTAATTCCCTCACCCATTGGATTCTACCATGGAAATGTTGACCTTATATTATTGATGGGTATACTTAAACCTCCCTTTAACATCATTTTTCGGTGGAGTTATGTGTTTCCTTACCTTTAAGGGAGGGGTTCAGCCTTCCT] [+] EMBL CA762635 [TTTTTTTTTTGGTTGCTCGTGGGGGATTTCAGGAGAAGAGGGGGGCGGCGTCGCATGGCGACTACCACGAGCAAGATCGCCGGGTGAAAGGCGCCGAGGTGTTCGTCGGCGGGTTGCCGCGGTCGGTGACGGAGCGGGCGCTCCGAGAGGTATTTTCTCCTTGTGGAGAGATTGTTGATTTGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGGAGAGGGAGTGTGCTTATATTGCTAAAAGGCTAATAAATGGTTTTGAGCTTCAAGGAAAGAGACTTGCTGCTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAGATTGGGGCATCGAAAAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGGTTGACCTTGCACTGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACCTCTAAATCGAGGCTTTGCATTTGTGCGATTTTCTTCTCATGCAGGAAGGCTTATTCCTTATTTTTGGTAATTCCCTCACCCATTGGATTCTACCATGGAAATGTTGACCTTATATTATTGATGGGTATACTTAAACCTCCCTTTAACATCATTTTTCGGTGGAGTTATGTGTTTCCTTACCTTTAAGGGAGGGGTTCAGCCTTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2484#0 ------------------------------------------------------------ consensus_2484#1 TTTTTTTTTTGGTTGCTCGTGGGGGATTTCAGGAGAAGAGGGGGGCGGCGTCGCATGGCG 60 consensus_2484#0 ---------------------------------------------------------CTC 3 consensus_2484#1 ACTACCACGAGCAAGATCGCCGGGTGAAAGGCGCCGAGGTGTTCGTCGGCGGGTTGCCGC 120 * * consensus_2484#0 GGCGCAGACTGCAGTGCTCTCTGTAAATGGTATTTTCTCCTTGTGGAGAGATTGTTGATT 63 consensus_2484#1 GGTCGGTGACGGAGCGGGCGCTCCGAGAGGTATTTTCTCCTTGTGGAGAGATTGTTGATT 180 ** * ** * * ** * ******************************** consensus_2484#0 TGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGG 123 consensus_2484#1 TGCGGATAATGAAAGATCAGAATGGCATTTCAAAGGGATATGGCTTTGTGCGATTTGCGG 240 ************************************************************ consensus_2484#0 AGAGGGAGTGTGCTTATATTGCTAAAAGGCAAATAAATGGTTTTGAGCTTCAAGGAAAGA 183 consensus_2484#1 AGAGGGAGTGTGCTTATATTGCTAAAAGGCTAATAAATGGTTTTGAGCTTCAAGGAAAGA 300 ****************************** ***************************** consensus_2484#0 GACTTGCTGTTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAG 243 consensus_2484#1 GACTTGCTGCTGATCTTTCGTTGGATCAAGATACACTCTTCTTTGGGAATCTTTGCAAAG 360 ********* ************************************************** consensus_2484#0 ATTGGGGCATCGAAGAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGG 303 consensus_2484#1 ATTGGGGCATCGAAAAATTTGAAGAATTGATTCGCAAGGCATTAGAAGATGTTGTTTCGG 420 ************** ********************************************* consensus_2484#0 TTGACCTTGCAATGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACGTCTAAATCGAG 363 consensus_2484#1 TTGACCTTGCACTGGCTCGAAACCATGACTCTTCAGTTGGGAAAAGACCTCTAAATCGAG 480 *********** ************************************ *********** consensus_2484#0 GCTTTGCATTTGTGCGATTTTCTTCTCATGCAGTA----TTGACCAATAT-----ATAGC 414 consensus_2484#1 GCTTTGCATTTGTGCGATTTTCTTCTCATGCAGGAAGGCTTATTCCTTATTTTTGGTAAT 540 ********************************* * ** * *** ** consensus_2484#0 CTCTTGTCTTAAAACAATCTTTATTGGATAAAACCATCTGACTGAAATATAGGGATATGT 474 consensus_2484#1 TCCCTCACCCATTGGATTCTACCATGGAAATGTTGACCTTA-TATTATTGATGGGTATAC 599 * * * * * *** **** * * ** * * ** * ** *** consensus_2484#0 ATAAAGTTAGCTTCTTTCTCTTCTCCTGGATTCCTGATGAATGATCCTATCCTTTTGTGG 534 consensus_2484#1 TTAAACCTCCCTTTAACATCATTTTTCGG--TGGAGTTATGTGTTTCCTTACCTTTAAGG 657 **** * *** ** * * ** * * * ** * * * * *** ** consensus_2484#0 TGTGCCTTAAATCTATCTGCTACAAAAGAAGCGCATTATCAAGTAATTGCATATCTAAGT 594 consensus_2484#1 GAGGGGTTCAGCCTTCCT------------------------------------------ 675 * ** * ** ** consensus_2484#0 AATTTTGTCTCCTTTATGAGATGANGGGCCAGACGATGGTGCATTGTCACAATGGTACCA 654 consensus_2484#1 ------------------------------------------------------------ consensus_2484#0 ACATATNCTTATCATCTACTGACAAGAAAATCAATCCATATCNTTTACTCAGNGGTGGTT 714 consensus_2484#1 ------------------------------------------------------------ consensus_2484#0 ATGACGTAATGGAATGCACTTTTATCATCTGATCNTTCAAATGACTGGATTGGNGNTGCA 774 consensus_2484#1 ------------------------------------------------------------ consensus_2484#0 AAGGGCATCTTCTATNGGTTAGGTTTCATATGGAAAGG 812 consensus_2484#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||