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Oryza sativa
cluster # 2487 cluster # 2487       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2487#0 length = 827 sequences # 1  
consensus_2487#1 length = 682 sequences # 1  

consensusID : consensus_2487#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 827
fasta sequence
                              [AGGGGGAGCGCCGAGAGGAAGAAGATGAGTAGAGCCTGTAGAGGAGAGAGCAGTGGCGGTGGCCGGAGCTCTCTGGGCTACCTCTTCGAGCCGGAGCCGGAGGATATCATTCCGGATCACTCGACTAAATCCGTTCAAGGAACCAACAAGGCCCCAAAAGGCAATATTGTTCTTGGGGACAAGATGGCCAGCGACGAAGCAAATCAAGAACACCAGGCTGCTGCTCCTCTGAAGAAAGAAGACTCCAACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGNTTAATCTATGTACGTACGTGTGTGGAAAAGGTCTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGGGGGGGGGCATGGTTTTTGGATCTTTGGTTCGGCCTGGTATTTGGTGCATGGCTATTTGACATTATTGGTGGAGAATGGTTGNCATCGAGGGCATAAGNTGGATTTATATATGGGACTAGNAATTTATGGTTGGGATGATC]

[+] EMBL CA764361             [AGGGGGAGCGCCGAGAGGAAGAAGATGAGTAGAGCCTGTAGAGGAGAGAGCAGTGGCGGTGGCCGGAGCTCTCTGGGCTACCTCTTCGAGCCGGAGCCGGAGGATATCATTCCGGATCACTCGACTAAATCCGTTCAAGGAACCAACAAGGCCCCAAAAGGCAATATTGTTCTTGGGGACAAGATGGCCAGCGACGAAGCAAATCAAGAACACCAGGCTGCTGCTCCTCTGAAGAAAGAAGACTCCAACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGNTTAATCTATGTACGTACGTGTGTGGAAAAGGTCTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGGGGGGGGGCATGGTTTTTGGATCTTTGGTTCGGCCTGGTATTTGGTGCATGGCTATTTGACATTATTGGTGGAGAATGGTTGNCATCGAGGGCATAAGNTGGATTTATATATGGGACTAGNAATTTATGGTTGGGATGATC]


>consensus_2487#0 AGGGGGAGCGCCGAGAGGAAGAAGATGAGTAGAGCCTGTAGAGGAGAGAGCAGTGGCGGT GGCCGGAGCTCTCTGGGCTACCTCTTCGAGCCGGAGCCGGAGGATATCATTCCGGATCAC TCGACTAAATCCGTTCAAGGAACCAACAAGGCCCCAAAAGGCAATATTGTTCTTGGGGAC AAGATGGCCAGCGACGAAGCAAATCAAGAACACCAGGCTGCTGCTCCTCTGAAGAAAGAA GACTCCAACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAGTA GGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCT GGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCA ACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGG TGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCC TCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTT TAGGGATCTAGNTTAATCTATGTACGTACGTGTGTGGAAAAGGTCTCCGCCGTATGGTGT GAGGATGCGTGCTAATTGCTTTATCGGGGGGGGGCATGGTTTTTGGATCTTTGGTTCGGC CTGGTATTTGGTGCATGGCTATTTGACATTATTGGTGGAGAATGGTTGNCATCGAGGGCA TAAGNTGGATTTATATATGGGACTAGNAATTTATGGTTGGGATGATC



consensusID : consensus_2487#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [ACAAGGCCCCAAAAAGGCAATATTTGTCTTTGGGACCATAAGACCAAGCGGCGAAGCCAATCAAGAACCCCAGGCTGCTGCTCCTCTGAAGGAAGAAGACTCCAACCCAATAGATCTAACCGATTTGCTTCAAACATCTACCATACTAANCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGTTTAATTTATGTACGTACGTGTGTGGAAAAGGTTTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGTGTGTGTGCATGTTTTTGTATCTTTGTTTCGGCCTGTTATTTGTTGCATGGCTATTTGACATTATTGTTGTAAATTGTTGCCATCGAGGGCATAAGTTGTATTTATATATGTGACTAGTAATTTAAAAAAAAAAAAAAAA]

[-] EMBL CA762642             [ACAAGGCCCCAAAAAGGCAATATTTGTCTTTGGGACCATAAGACCAAGCGGCGAAGCCAATCAAGAACCCCAGGCTGCTGCTCCTCTGAAGGAAGAAGACTCCAACCCAATAGATCTAACCGATTTGCTTCAAACATCTACCATACTAANCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGTTTAATTTATGTACGTACGTGTGTGGAAAAGGTTTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGTGTGTGTGCATGTTTTTGTATCTTTGTTTCGGCCTGTTATTTGTTGCATGGCTATTTGACATTATTGTTGTAAATTGTTGCCATCGAGGGCATAAGTTGTATTTATATATGTGACTAGTAATTTAAAAAAAAAAAAAAAA]


>consensus_2487#1 ACAAGGCCCCAAAAAGGCAATATTTGTCTTTGGGACCATAAGACCAAGCGGCGAAGCCAA TCAAGAACCCCAGGCTGCTGCTCCTCTGAAGGAAGAAGACTCCAACCCAATAGATCTAAC CGATTTGCTTCAAACATCTACCATACTAANCAAGTAGGCAATAACTCTGGCCTTCTTATC ACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTT CTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTT GTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCT TGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTT TATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGTTTAATTTATGTA CGTACGTGTGTGGAAAAGGTTTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTAT CGTGTGTGTGCATGTTTTTGTATCTTTGTTTCGGCCTGTTATTTGTTGCATGGCTATTTG ACATTATTGTTGTAAATTGTTGCCATCGAGGGCATAAGTTGTATTTATATATGTGACTAG TAATTTAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2487#0      AGGGGGAGCGCCGAGAGGAAGAAGATGAGTAGAGCCTGTAGAGGAGAGAGCAGTGGCGGT 60
consensus_2487#1      ------------------------------------------------------------
                                                                                  

consensus_2487#0      GGCCGGAGCTCTCTGGGCTACCTCTTCGAGCCGGAGCCGGAGGATATCATTCCGGATCAC 120
consensus_2487#1      ------------------------------------------------------------
                                                                                  

consensus_2487#0      TCGACTAAATCCGTTCAAGGAACCAACAAGGCCCCAAAA-GGCAATATTGTTCTTGGGGA 179
consensus_2487#1      -------------------------ACAAGGCCCCAAAAAGGCAATATTTGTCTTTGGGA 35
                                               ************** *********  **** ****

consensus_2487#0      CAAGATGGCCA-GCGACGAAGCAAATCAAGAACACCAGGCTGCTGCTCCTCTGAAGAAAG 238
consensus_2487#1      CCATAAGACCAAGCGGCGAAGCCAATCAAGAACCCCAGGCTGCTGCTCCTCTGAAGGAAG 95
                      * * * * *** *** ****** ********** ********************** ***

consensus_2487#0      AAGACTCCAACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAG 298
consensus_2487#1      AAGACTCCAACCCAATAG-ATCTAACCGATTTGCTTCAAACATCTACCATACTAANCAAG 154
                      ****************** ***** ***** ************************ ****

consensus_2487#0      TAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGC 358
consensus_2487#1      TAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGC 214
                      ************************************************************

consensus_2487#0      CTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTG 418
consensus_2487#1      CTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTG 274
                      ************************************************************

consensus_2487#0      CAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGG 478
consensus_2487#1      CAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGG 334
                      ************************************************************

consensus_2487#0      GGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTG 538
consensus_2487#1      GGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTG 394
                      ************************************************************

consensus_2487#0      CCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGT 598
consensus_2487#1      CCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGT 454
                      ************************************************************

consensus_2487#0      TTTAGGGATCTAGNTTAATCTATGTACGTACGTGTGTGGAAAAGGTCTCCGCCGTATGGT 658
consensus_2487#1      TTTAGGGATCTAGTTTAATTTATGTACGTACGTGTGTGGAAAAGGTTTCCGCCGTATGGT 514
                      ************* ***** ************************** *************

consensus_2487#0      GTGAGGATGCGTGCTAATTGCTTTATCGGGGGGGGGCATGGTTTTTGGATCTTTGGTTCG 718
consensus_2487#1      GTGAGGATGCGTGCTAATTGCTTTATCGTGTGTGTGCATG-TTTTTGTATCTTTGTTTCG 573
                      **************************** * * * ***** ****** ******* ****

consensus_2487#0      GCCTGGTATTTGGTGCATGGCTATTTGACATTATTGGTGGAGAATGGTTGNCATCGAGGG 778
consensus_2487#1      GCCTGTTATTTGTTGCATGGCTATTTGACATTATTGTTGTA-AATTGTTGCCATCGAGGG 632
                      ***** ****** *********************** ** * *** **** *********

consensus_2487#0      CATAAGNTGGATTTATATATGGGACTAGNAATTTATGGTTGGGATGATC- 827
consensus_2487#1      CATAAGTTGTATTTATATATGTGACTAGTAATTTAAAAAAAAAAAAAAAA 682
                      ****** ** *********** ****** ******        *  *   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)