These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [AGGGGGAGCGCCGAGAGGAAGAAGATGAGTAGAGCCTGTAGAGGAGAGAGCAGTGGCGGTGGCCGGAGCTCTCTGGGCTACCTCTTCGAGCCGGAGCCGGAGGATATCATTCCGGATCACTCGACTAAATCCGTTCAAGGAACCAACAAGGCCCCAAAAGGCAATATTGTTCTTGGGGACAAGATGGCCAGCGACGAAGCAAATCAAGAACACCAGGCTGCTGCTCCTCTGAAGAAAGAAGACTCCAACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGNTTAATCTATGTACGTACGTGTGTGGAAAAGGTCTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGGGGGGGGGCATGGTTTTTGGATCTTTGGTTCGGCCTGGTATTTGGTGCATGGCTATTTGACATTATTGGTGGAGAATGGTTGNCATCGAGGGCATAAGNTGGATTTATATATGGGACTAGNAATTTATGGTTGGGATGATC] [+] EMBL CA764361 [AGGGGGAGCGCCGAGAGGAAGAAGATGAGTAGAGCCTGTAGAGGAGAGAGCAGTGGCGGTGGCCGGAGCTCTCTGGGCTACCTCTTCGAGCCGGAGCCGGAGGATATCATTCCGGATCACTCGACTAAATCCGTTCAAGGAACCAACAAGGCCCCAAAAGGCAATATTGTTCTTGGGGACAAGATGGCCAGCGACGAAGCAAATCAAGAACACCAGGCTGCTGCTCCTCTGAAGAAAGAAGACTCCAACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGNTTAATCTATGTACGTACGTGTGTGGAAAAGGTCTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGGGGGGGGGCATGGTTTTTGGATCTTTGGTTCGGCCTGGTATTTGGTGCATGGCTATTTGACATTATTGGTGGAGAATGGTTGNCATCGAGGGCATAAGNTGGATTTATATATGGGACTAGNAATTTATGGTTGGGATGATC] consensusID : consensus_2487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [ACAAGGCCCCAAAAAGGCAATATTTGTCTTTGGGACCATAAGACCAAGCGGCGAAGCCAATCAAGAACCCCAGGCTGCTGCTCCTCTGAAGGAAGAAGACTCCAACCCAATAGATCTAACCGATTTGCTTCAAACATCTACCATACTAANCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGTTTAATTTATGTACGTACGTGTGTGGAAAAGGTTTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGTGTGTGTGCATGTTTTTGTATCTTTGTTTCGGCCTGTTATTTGTTGCATGGCTATTTGACATTATTGTTGTAAATTGTTGCCATCGAGGGCATAAGTTGTATTTATATATGTGACTAGTAATTTAAAAAAAAAAAAAAAA] [-] EMBL CA762642 [ACAAGGCCCCAAAAAGGCAATATTTGTCTTTGGGACCATAAGACCAAGCGGCGAAGCCAATCAAGAACCCCAGGCTGCTGCTCCTCTGAAGGAAGAAGACTCCAACCCAATAGATCTAACCGATTTGCTTCAAACATCTACCATACTAANCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGTTTAATTTATGTACGTACGTGTGTGGAAAAGGTTTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGTGTGTGTGCATGTTTTTGTATCTTTGTTTCGGCCTGTTATTTGTTGCATGGCTATTTGACATTATTGTTGTAAATTGTTGCCATCGAGGGCATAAGTTGTATTTATATATGTGACTAGTAATTTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2487#0 AGGGGGAGCGCCGAGAGGAAGAAGATGAGTAGAGCCTGTAGAGGAGAGAGCAGTGGCGGT 60 consensus_2487#1 ------------------------------------------------------------ consensus_2487#0 GGCCGGAGCTCTCTGGGCTACCTCTTCGAGCCGGAGCCGGAGGATATCATTCCGGATCAC 120 consensus_2487#1 ------------------------------------------------------------ consensus_2487#0 TCGACTAAATCCGTTCAAGGAACCAACAAGGCCCCAAAA-GGCAATATTGTTCTTGGGGA 179 consensus_2487#1 -------------------------ACAAGGCCCCAAAAAGGCAATATTTGTCTTTGGGA 35 ************** ********* **** **** consensus_2487#0 CAAGATGGCCA-GCGACGAAGCAAATCAAGAACACCAGGCTGCTGCTCCTCTGAAGAAAG 238 consensus_2487#1 CCATAAGACCAAGCGGCGAAGCCAATCAAGAACCCCAGGCTGCTGCTCCTCTGAAGGAAG 95 * * * * *** *** ****** ********** ********************** *** consensus_2487#0 AAGACTCCAACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAG 298 consensus_2487#1 AAGACTCCAACCCAATAG-ATCTAACCGATTTGCTTCAAACATCTACCATACTAANCAAG 154 ****************** ***** ***** ************************ **** consensus_2487#0 TAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGC 358 consensus_2487#1 TAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGC 214 ************************************************************ consensus_2487#0 CTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTG 418 consensus_2487#1 CTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTG 274 ************************************************************ consensus_2487#0 CAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGG 478 consensus_2487#1 CAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGG 334 ************************************************************ consensus_2487#0 GGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTG 538 consensus_2487#1 GGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTG 394 ************************************************************ consensus_2487#0 CCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGT 598 consensus_2487#1 CCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGT 454 ************************************************************ consensus_2487#0 TTTAGGGATCTAGNTTAATCTATGTACGTACGTGTGTGGAAAAGGTCTCCGCCGTATGGT 658 consensus_2487#1 TTTAGGGATCTAGTTTAATTTATGTACGTACGTGTGTGGAAAAGGTTTCCGCCGTATGGT 514 ************* ***** ************************** ************* consensus_2487#0 GTGAGGATGCGTGCTAATTGCTTTATCGGGGGGGGGCATGGTTTTTGGATCTTTGGTTCG 718 consensus_2487#1 GTGAGGATGCGTGCTAATTGCTTTATCGTGTGTGTGCATG-TTTTTGTATCTTTGTTTCG 573 **************************** * * * ***** ****** ******* **** consensus_2487#0 GCCTGGTATTTGGTGCATGGCTATTTGACATTATTGGTGGAGAATGGTTGNCATCGAGGG 778 consensus_2487#1 GCCTGTTATTTGTTGCATGGCTATTTGACATTATTGTTGTA-AATTGTTGCCATCGAGGG 632 ***** ****** *********************** ** * *** **** ********* consensus_2487#0 CATAAGNTGGATTTATATATGGGACTAGNAATTTATGGTTGGGATGATC- 827 consensus_2487#1 CATAAGTTGTATTTATATATGTGACTAGTAATTTAAAAAAAAAAAAAAAA 682 ****** ** *********** ****** ****** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||