cluster # 249

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Oryza sativa
cluster # 249 cluster # 249 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_249#0 length = 656 sequences # 1

consensus_249#1 length = 232 sequences # 1

consensusID : consensus_249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACGCCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACCGCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACAGGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCGCAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGGGTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGGTGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGGCGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT]

[+] EMBL AK072876             [TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACGCCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACCGCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACAGGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCGCAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGGGTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGGTGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGGCGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT]




>consensus_249#0
TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACG
CCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACC
GCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACA
GGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCG
CAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGG
GTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGG
TGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGG
CGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGC
AGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCC
TTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTAT
GCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT

consensusID : consensus_249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [AGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT]

[+] EMBL CF328876             [AGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT]




>consensus_249#1
AGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGG
CGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTT
CAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGA
AAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_249#0      TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACG 60
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      CCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACC 120
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      GCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACA 180
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      GGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCG 240
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      CAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGG 300
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      GTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGG 360
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      TGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGG 420
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      CGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGC 480
consensus_249#1      ----------------------------------------------AGGACCTCGGTGGC 14
                                                                   **************

consensus_249#0      AGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCC 540
consensus_249#1      AGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCC 74
                     ************************************************************

consensus_249#0      TTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTAT 600
consensus_249#1      TTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTAT 134
                     ************************************************************

consensus_249#0      GCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT---- 656
consensus_249#1      GCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAAAAAAAAAAAAAAA 194
                     **********************************************  *    **     

consensus_249#0      --------------------------------------
consensus_249#1      AAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT 232