|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1433 fasta sequence
[TGGGCAACGTGTGGGTGTTCGACGCGCGGCTCGGGTCGTTCCACCGCGCGCCGAGGCTGTACGCGCTCTGCATCGGCCTCCTCGCATGGAACGCCGTCGTCTACTCGCTCCCATTCCTCCTCTTCCTCCTGCTCTGCTGCTTCGTCCCGGCCGTCGGCTACGCGCTCGGGTACAACATGAACTCCGCGTCCGTCGGCCGGGGCGCCTCCGACGAGCAGCTCGCCGCGCTGCCGCAGTGGCGGTTCAAGGAGCCGGCCGACGCGCCGAGAGACCGCGACCACGACGATCAGGTGAGCGCACGTTCCGTTGCCGCGTACGTTAATATCGTGGGATATGTTAGTTTTGCATGCACAGAGATGATTAGGCAGTAGCAAAGCAGCGTGCATGTCTCTGCGGGGAGGTAGGAAAGTTTAGCGATGCAGAGAGGGGAATTAAGGAGAAACTCGCCAAACAAATGATTGGTGAACTCGGCTATTGGCCAGAATAGGATATCCAAAAAGTGATGAAACGTGCGCACCAAACTAGAACAATCTTCCTTTTTGGGCGGATATACTAAGATAAGAACTGCTAAAACCTTACTTTTCCCCATGGTTCGGTGCTTAGGAACAACTCAGCCAACATGAGCTAGTGCTAACTAGCTAACATAAGAACTGCTAAAACCTTTACCTTTCCCATTGGTTCGGTGCTTGCTTAGGAACAACTTAGGCACTTAGCCAACATAAACTAGTGCTAACTAGCTATGATGTGTTGATGTTGTCCAGTTTTATACATCTAAGCCAATTAGTTTGCTCTCTAGCTAGCTTATTATTGTTTAGAGCTCACAACTTATAGGAAACTAGGAATTGTCCTTGCTTTTACATACTTACTGGAATTAAATGGCAGGAGTGCTGCATATGCCTGGCTCAGTACAAGGAGAAGGAGGAGGTGAGGCAGCTGCCGTGCACGCACATGTTCCACCTGAAATGCGTGGACAGGTGGCTCAGGATCATCTCCTCTTGCCCTCTCTGCAAGCAAGAGCTCAGCTAGAAAAACAAGCTGACATGAATACGGAGCTACTGATACCGCGCCTTCCGACGCATGCGTCGCACCTCACGGAAGAAGAAAAAGAAAAGAAAAAAAAACCCTGGCACGCCAACCATGCGTGCACTGACCTAGTTCGATATTGCTGATGACGGCACGATGAATATTTATGCATACACTTGCATGTGAAAAAGATATGCTTGGATTAATTAGGCTAGGTAGACAAGCGGGAAATGTGTAAAAGAGTTTTTTTGTGTGTGTGTGTGTGTGTGTGTTGTTTGCGGTGTTGTTGCATCTCTCGAATGTGGTCGATCGAGATGCGCGTGTACGTAGTTTTTTTCAGCAGAAACCAAACGAGAACATATACCAGGGTTTGCGCTCGTGCTCCAGCGAATGCCAACCCAAAGGTATTC]
[+] EMBL AK069643 [TGGGCAACGTGTGGGTGTTCGACGCGCGGCTCGGGTCGTTCCACCGCGCGCCGAGGCTGTACGCGCTCTGCATCGGCCTCCTCGCATGGAACGCCGTCGTCTACTCGCTCCCATTCCTCCTCTTCCTCCTGCTCTGCTGCTTCGTCCCGGCCGTCGGCTACGCGCTCGGGTACAACATGAACTCCGCGTCCGTCGGCCGGGGCGCCTCCGACGAGCAGCTCGCCGCGCTGCCGCAGTGGCGGTTCAAGGAGCCGGCCGACGCGCCGAGAGACCGCGACCACGACGATCAGGTGAGCGCACGTTCCGTTGCCGCGTACGTTAATATCGTGGGATATGTTAGTTTTGCATGCACAGAGATGATTAGGCAGTAGCAAAGCAGCGTGCATGTCTCTGCGGGGAGGTAGGAAAGTTTAGCGATGCAGAGAGGGGAATTAAGGAGAAACTCGCCAAACAAATGATTGGTGAACTCGGCTATTGGCCAGAATAGGATATCCAAAAAGTGATGAAACGTGCGCACCAAACTAGAACAATCTTCCTTTTTGGGCGGATATACTAAGATAAGAACTGCTAAAACCTTACTTTTCCCCATGGTTCGGTGCTTAGGAACAACTCAGCCAACATGAGCTAGTGCTAACTAGCTAACATAAGAACTGCTAAAACCTTTACCTTTCCCATTGGTTCGGTGCTTGCTTAGGAACAACTTAGGCACTTAGCCAACATAAACTAGTGCTAACTAGCTATGATGTGTTGATGTTGTCCAGTTTTATACATCTAAGCCAATTAGTTTGCTCTCTAGCTAGCTTATTATTGTTTAGAGCTCACAACTTATAGGAAACTAGGAATTGTCCTTGCTTTTACATACTTACTGGAATTAAATGGCAGGAGTGCTGCATATGCCTGGCTCAGTACAAGGAGAAGGAGGAGGTGAGGCAGCTGCCGTGCACGCACATGTTCCACCTGAAATGCGTGGACAGGTGGCTCAGGATCATCTCCTCTTGCCCTCTCTGCAAGCAAGAGCTCAGCTAGAAAAACAAGCTGACATGAATACGGAGCTACTGATACCGCGCCTTCCGACGCATGCGTCGCACCTCACGGAAGAAGAAAAAGAAAAGAAAAAAAAACCCTGGCACGCCAACCATGCGTGCACTGACCTAGTTCGATATTGCTGATGACGGCACGATGAATATTTATGCATACACTTGCATGTGAAAAAGATATGCTTGGATTAATTAGGCTAGGTAGACAAGCGGGAAATGTGTAAAAGAGTTTTTTTGTGTGTGTGTGTGTGTGTGTGTTGTTTGCGGTGTTGTTGCATCTCTCGAATGTGGTCGATCGAGATGCGCGTGTACGTAGTTTTTTTCAGCAGAAACCAAACGAGAACATATACCAGGGTTTGCGCTCGTGCTCCAGCGAATGCCAACCCAAAGGTATTC]
consensusID : consensus_2502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1411 fasta sequence
[TCCCCCTTGACCGGCCACCACAATGCGGCCGCCCTCGTCGTCGGCGACGCCCGGGACGGGCCGGGTGTCGGCGTTCACGATGCGCGCGGTGGCGCGCATGTCGAGGGCGCGGTGGTTCATCTTCCTGAGGCGGGTGTACCAGTACCAGAACGGCCCGAGGTCCGACCTGGGCTCCAACCCCTTCAACTCGCCCGGCTGGCTCGCCCTCGAGCTCGGCGTGATCATGGCGCAGATGGTCGTCACCACCGCCGTCGTCGCCACCTCCCCCAAGGAGCGCCCCGCGTGGCCGCTCCGGGTTTGGGTCGCCGCCTACAACGTGGGCAACGTGCTCAGCCTCCCCCTCCTCTACTGGCGCCACCGGCATTCCTCCTCCGGCGCCCGCGGCGGCACGCTCTCCGACGATCCCGAGATGCACGGCGCCAACGACCCTCTAAGGAACAGGTCGTATCTGATGAACAAGGCACGGGCGTTCCTGGAGCTGTTCTTCGCGATGTGGTTCGTGATGGGCAACGTGTGGGTGTTCGACGCGCGGCTCGGGTCGTTCCACCGCGCGCCGAGGCTGTACGCGCTCTGCATCGGCCTCCTCGCATGGAACGCCGTCGTCTACTCGCTCCCATTCCTCCTCTTCCTCCTGCTCTGCTGCTTCGTCCCGGCCGTCGGCTACGCGCTCGGGTACAACATGAACTCCGCGTCCGTCGGCCGGGGCGCCTCCGACGAGCAGCTCGCCGCGCTGCCGCAGTGGCGGTTCAAGGAGCCGGCCGACGCGCCGAGAGACCGCGACCACGACGATCAGGAGTGCTGCATATGCCTGGCTCAGTACAAGGAGAAGGAGGAGGTGAGGCAGCTGCCGTGCACGCACATGTTCCACCTGAAATGCGTGGACAGGTGGCTCAGGATCATCTCCTCTTGCCCTCTCTGCAAGCAAGAGCTCAGCTAGAAAAACAAGCTGACATGAATACGGAGCTACTGATACCGCGCCTTCCGACGCATGCGTCGCACCTCACGGAAGAAGAAAAAGAAAAGAAAAAAAAACCCTGGCACGCCAACCATGCGTGCACTGACCTAGTTCGATATTGCTGATGACGGCACGATGAATATTTATGCATACACTTGCATGTGAAAAAGATATGCTTGGATTAATTAGGCTAGGTAGACAAGCGGGAAATGTGTAAAAGAGTTTTTTTGTGTGTGTGTGTGTGTGTGTGTTGTTTGCGGTGTTGTTGCATCTCTCGAATGTGGTCGATCGAGATGCGCGTGTACGTAGTTTTTTTCAGCAGAAACCAAACGAGAACATATACCAGGGTTTGCGCTCGTGCTCCAGCGAATGCCAACCCAAAGGTATTCGGCCCGGTCGAAACTACTACAGTACTGTATTCTAGGCCTGGCTCAGAGTGGGCCAACATTTTCGGCC]
[+] EMBL AK099917 [TCCCCCTTGACCGGCCACCACAATGCGGCCGCCCTCGTCGTCGGCGACGCCCGGGACGGGCCGGGTGTCGGCGTTCACGATGCGCGCGGTGGCGCGCATGTCGAGGGCGCGGTGGTTCATCTTCCTGAGGCGGGTGTACCAGTACCAGAACGGCCCGAGGTCCGACCTGGGCTCCAACCCCTTCAACTCGCCCGGCTGGCTCGCCCTCGAGCTCGGCGTGATCATGGCGCAGATGGTCGTCACCACCGCCGTCGTCGCCACCTCCCCCAAGGAGCGCCCCGCGTGGCCGCTCCGGGTTTGGGTCGCCGCCTACAACGTGGGCAACGTGCTCAGCCTCCCCCTCCTCTACTGGCGCCACCGGCATTCCTCCTCCGGCGCCCGCGGCGGCACGCTCTCCGACGATCCCGAGATGCACGGCGCCAACGACCCTCTAAGGAACAGGTCGTATCTGATGAACAAGGCACGGGCGTTCCTGGAGCTGTTCTTCGCGATGTGGTTCGTGATGGGCAACGTGTGGGTGTTCGACGCGCGGCTCGGGTCGTTCCACCGCGCGCCGAGGCTGTACGCGCTCTGCATCGGCCTCCTCGCATGGAACGCCGTCGTCTACTCGCTCCCATTCCTCCTCTTCCTCCTGCTCTGCTGCTTCGTCCCGGCCGTCGGCTACGCGCTCGGGTACAACATGAACTCCGCGTCCGTCGGCCGGGGCGCCTCCGACGAGCAGCTCGCCGCGCTGCCGCAGTGGCGGTTCAAGGAGCCGGCCGACGCGCCGAGAGACCGCGACCACGACGATCAGGAGTGCTGCATATGCCTGGCTCAGTACAAGGAGAAGGAGGAGGTGAGGCAGCTGCCGTGCACGCACATGTTCCACCTGAAATGCGTGGACAGGTGGCTCAGGATCATCTCCTCTTGCCCTCTCTGCAAGCAAGAGCTCAGCTAGAAAAACAAGCTGACATGAATACGGAGCTACTGATACCGCGCCTTCCGACGCATGCGTCGCACCTCACGGAAGAAGAAAAAGAAAAGAAAAAAAAACCCTGGCACGCCAACCATGCGTGCACTGACCTAGTTCGATATTGCTGATGACGGCACGATGAATATTTATGCATACACTTGCATGTGAAAAAGATATGCTTGGATTAATTAGGCTAGGTAGACAAGCGGGAAATGTGTAAAAGAGTTTTTTTGTGTGTGTGTGTGTGTGTGTGTTGTTTGCGGTGTTGTTGCATCTCTCGAATGTGGTCGATCGAGATGCGCGTGTACGTAGTTTTTTTCAGCAGAAACCAAACGAGAACATATACCAGGGTTTGCGCTCGTGCTCCAGCGAATGCCAACCCAAAGGTATTCGGCCCGGTCGAAACTACTACAGTACTGTATTCTAGGCCTGGCTCAGAGTGGGCCAACATTTTCGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2502#0 TGGGCAACGTGTGGGTGTTCGACGCGCGGCTCGGGTCGTTCCACCGCGCGCCGAGGCTGT 60
consensus_2502#1 ------------------------------------------------------------
consensus_2502#0 ACGCGCTCTGCATCGGCCTCCTCGCATGGAACGCCGTCGTCTACTCGCTCCCATTCCTCC 120
consensus_2502#1 --------------------------------------------TCCCCCTTGACCGGCC 16
** * * * **
consensus_2502#0 TCTTCCTCCTGCTCTGCTGCTTCGTCCCGGCCGTCGGCTACGCGCTCGGGTACAACATGA 180
consensus_2502#1 ACCACAATGCGGCCGCCCTCGTCGTCGGCGACGCCCGGGACGGGCCGGGTGTCGGCGTTC 76
* * * * * * ***** * ** * * *** ** ** * * *
consensus_2502#0 ACTCCGCGTCCGTCGGCCGGGGCGCCTCCGACGAGCAGCTCGCCGCGCTGCCGCAGTGGC 240
consensus_2502#1 ACGATGCGCGCGGTGGC--GCGCATGTCGAGGGCGCGGTGGTTCATCTTCCTGAGGCGGG 134
** *** ** *** * ** ** * ** * * * * * * **
consensus_2502#0 GGTTCAAGGAGCCGGCCGACGCGCCGAGAGACCGCGACCACGACGA--TCAGGT-GAGCG 297
consensus_2502#1 TGTACCAGTACCAGAACGGCCCGAGGTCCGACCTGGGCTCCAACCCCTTCAACTCGCCCG 194
** * ** * * * ** * ** * **** * * * ** *** * * **
consensus_2502#0 CACGTTCCGTTGCCGCGTACGTTAATATCGTGGGATATGTTAGTTTTGCATGCACAGAGA 357
consensus_2502#1 GCTGGCTCGCCCTCGAGCTCGGCGTGATCATGGCGCAGATGGTCGTCACCACCGCCGTCG 254
* ** ** * ** *** *** * * * * * * *
consensus_2502#0 TGATTAGG-CAGTAGCAAAGCAGCGTGCATGTCT-CTGCGGGGAGGTAGGAAAGTTTAGC 415
consensus_2502#1 TCGCCACCTCCCCCAAGGAGCGCCCCGCGTGGCCGCTCCGGGTTTGGGTCGCCGCCTA-C 313
* * * *** * ** ** * ** **** * * ** *
consensus_2502#0 GATGCAGAGAGGGGAATTAAGGAGAAACTCGCCAAACAA-ATGATTGGTGAAC----TCG 470
consensus_2502#1 AACGTGGGCAACGTGCTCAGCCTCCCCCTCCTCTACTGGCGCCACCGGCATTCCTCCTCC 373
* * * * * * * *** * * * ** * **
consensus_2502#0 GCTATTGGCCAGAATAGGATATCCAAAAA----GTGATGAAACGTGCGCACCAAACTAGA 526
consensus_2502#1 GGCGCCCGCGGCGGCACGCTCTCCGACGATCCCGAGATGCACGGCGCCAACGACCCTCTA 433
* ** * * * *** * * * **** * * ** ** * ** *
consensus_2502#0 ACAATCTTCCTTTTTGGGCGGATATACTAAG-ATAAGAACTGCTAAAACCTTACTTTTCC 585
consensus_2502#1 AGGAACAGGTCGTAT---CTGATGAACAAGGCACGGGCGTTCCTGGAGCTGTTCTTCGCG 490
* * * * * * *** ** * * * * * ** * * * *** *
consensus_2502#0 CCATGGTTCGGTGCTTAGGAACAACTCAGCCAACATGAGCTAGTGCTAACTAGCTAACAT 645
consensus_2502#1 ATGTGGTTCG-TGATGGGCAACGTGTGGGT--GTTCGACGCGCGGCT--CGGGTCGTTCC 545
******* ** * * *** * * ** *** * *
consensus_2502#0 AAGAACTGCTAAAACCTT-TACCTTTCCCATTGGTTCGGTGCTTGCTTAGGAACAACTTA 704
consensus_2502#1 ACCGCGCGCCGAGGCTGTACGCGCTCTGCATCGGCC---TCCTCGCAT-GGAACGCCGTC 601
* ** * * * * * *** ** * ** ** * ***** * *
consensus_2502#0 GGCACTTAGCCAACATAAACTAGTGCTAACTAGCTATGATGTGTTGATGTTGTCCAGTTT 764
consensus_2502#1 GTCTACTCGCTCCCATTCCTCCTCTTCCTCCTGCTCTGCTGCTTCGTCCCGGCCGTCGGC 661
* * * ** *** * *** ** ** * * * *
consensus_2502#0 TATACATCTAAGC-CAA--TTAGTTT---GCTCTCTAGCTAGCTTATTATTGTTTAG-AG 817
consensus_2502#1 TACGCGCTCGGGTACAACATGAACTCCGCGTCCGTCGGCCGGGGCGCCTCCGACGAGCAG 721
** * * *** * * * * * ** * * ** **
consensus_2502#0 CTCACAACTTATAGGAAACTAGGAATT---GTCCTTGCTTTTACAT--ACTTACTGGAAT 872
consensus_2502#1 CTCGCCGCGCTGCCGCAGTGGCGGTTCAAGGAGCCGGCCGACGCGCCGAGAGACCGCGAC 781
*** * * * * * * * * ** * * ** * *
consensus_2502#0 TA-AATGG-CAGGAGTGCTGCATATGCCTGGCTCAGTACAAGGAGAAGGAGGAGGTGAGG 930
consensus_2502#1 CACGACGATCAGGAGTGCTGCATATGCCTGGCTCAGTACAAGGAGAAGGAGGAGGTGAGG 841
* * * ***************************************************
consensus_2502#0 CAGCTGCCGTGCACGCACATGTTCCACCTGAAATGCGTGGACAGGTGGCTCAGGATCATC 990
consensus_2502#1 CAGCTGCCGTGCACGCACATGTTCCACCTGAAATGCGTGGACAGGTGGCTCAGGATCATC 901
************************************************************
consensus_2502#0 TCCTCTTGCCCTCTCTGCAAGCAAGAGCTCAGCTAGAAAAACAAGCTGACATGAATACGG 1050
consensus_2502#1 TCCTCTTGCCCTCTCTGCAAGCAAGAGCTCAGCTAGAAAAACAAGCTGACATGAATACGG 961
************************************************************
consensus_2502#0 AGCTACTGATACCGCGCCTTCCGACGCATGCGTCGCACCTCACGGAAGAAGAAAAAGAAA 1110
consensus_2502#1 AGCTACTGATACCGCGCCTTCCGACGCATGCGTCGCACCTCACGGAAGAAGAAAAAGAAA 1021
************************************************************
consensus_2502#0 AGAAAAAAAAACCCTGGCACGCCAACCATGCGTGCACTGACCTAGTTCGATATTGCTGAT 1170
consensus_2502#1 AGAAAAAAAAACCCTGGCACGCCAACCATGCGTGCACTGACCTAGTTCGATATTGCTGAT 1081
************************************************************
consensus_2502#0 GACGGCACGATGAATATTTATGCATACACTTGCATGTGAAAAAGATATGCTTGGATTAAT 1230
consensus_2502#1 GACGGCACGATGAATATTTATGCATACACTTGCATGTGAAAAAGATATGCTTGGATTAAT 1141
************************************************************
consensus_2502#0 TAGGCTAGGTAGACAAGCGGGAAATGTGTAAAAGAGTTTTTTTGTGTGTGTGTGTGTGTG 1290
consensus_2502#1 TAGGCTAGGTAGACAAGCGGGAAATGTGTAAAAGAGTTTTTTTGTGTGTGTGTGTGTGTG 1201
************************************************************
consensus_2502#0 TGTGTTGTTTGCGGTGTTGTTGCATCTCTCGAATGTGGTCGATCGAGATGCGCGTGTACG 1350
consensus_2502#1 TGTGTTGTTTGCGGTGTTGTTGCATCTCTCGAATGTGGTCGATCGAGATGCGCGTGTACG 1261
************************************************************
consensus_2502#0 TAGTTTTTTTCAGCAGAAACCAAACGAGAACATATACCAGGGTTTGCGCTCGTGCTCCAG 1410
consensus_2502#1 TAGTTTTTTTCAGCAGAAACCAAACGAGAACATATACCAGGGTTTGCGCTCGTGCTCCAG 1321
************************************************************
consensus_2502#0 CGAATGCCAACCCAAAGGTATTC------------------------------------- 1433
consensus_2502#1 CGAATGCCAACCCAAAGGTATTCGGCCCGGTCGAAACTACTACAGTACTGTATTCTAGGC 1381
***********************
consensus_2502#0 ------------------------------
consensus_2502#1 CTGGCTCAGAGTGGGCCAACATTTTCGGCC 1411
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||