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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[AACGGGGAAAGGGTTTATGACCANGAATGCAATATACATTAATANCCAGGTAACATGAAGNTTCACCACATTTCTANATTTCTGGGATTTTGGAGCACCAGAACTTTCGGAACCAAAGAGGGTTAGAGTGAGATAAAATCTGAATGCAGCATTATAATGAATTGAGTATAGTAAGGGTGGCATGGTGGCACTACATTAATTCCAAAATGGAGATAGTATGAAATGTTTTTGTGCCAGATTTTAAGCAATACTTCATAGTAGCTAAAGATGGTAGCAGGCCACCAGCATGATACCTTTGAAGTAGATCCCTGGTTAACAATGGTGTATGTTGATTCCTTCACCTTTTACACGATTTGGATGGATCTTCTTCACATTTACCACTTTAGGATTGCAAAAGTGCAGTTCCCTGGTGGTCATTTTTTTCGTATAAATTCTTTCATGTGTATCTTTGCTCGTTGTATAAGAGCTATACTGTATAACTTGGGTGTTGACTGGCATGGCATGTACAGATGTAGAATGCCTTAACCCGAAAGCATTGGGTGATTCTTTCTTTCTTCTTCAAGGCTGAGATGTACCATGTCACACCAATGTCAAGTTTCGAGATCTTTGCATTTTGTACATCGGAAGGATTCTTGTATCATCAGTTTGATAAAAGATACATAGAGCTAAAGCAGACGACGAAACATTGCAAAAAA]
[+] EMBL AU100974 [AACGGGGAAAGGGTTTATGACCANGAATGCAATATACATTAATANCCAGGTAACATGAAGNTTCACCACATTTCTANATTTCTGGGATTTTGGAGCACCAGAACTTTCGGAACCAAAGAGGGTTAGAGTGAGATAAAATCTGAATGCAGCATTATAATGAATTGAGTATAGTAAGGGTGGCATGGTGGCACTACATTAATTCCAAAATGGAGATAGTATGAAATGTTTTTGTGCCAGATTTTAAGCAATACTTCATAGTAGCTAAAGATGGTAGCAGGCCACCAGCATGATACCTTTGAAGTAGATCCCTGGTTAACAATGGTGTATGTTGATTCCTTCACCTTTTACACGATTTGGATGGATCTTCTTCACATTTACCACTTTAGGATTGCAAAAGTGCAGTTCCCTGGTGGTCATTTTTTTCGTATAAATTCTTTCATGTGTATCTTTGCTCGTTGTATAAGAGCTATACTGTATAACTTGGGTGTTGACTGGCATGGCATGTACAGATGTAGAATGCCTTAACCCGAAAGCATTGGGTGATTCTTTCTTTCTTCTTCAAGGCTGAGATGTACCATGTCACACCAATGTCAAGTTTCGAGATCTTTGCATTTTGTACATCGGAAGGATTCTTGTATCATCAGTTTGATAAAAGATACATAGAGCTAAAGCAGACGACGAAACATTGCAAAAAA]
consensusID : consensus_2529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[AATGCAATATACATTAATAACAGACTAACAGTGACATGAGATTCACTACATTCTACATTTCTGGGATTTTGGAGCAACAGAACTTTCGGGAACAAAGAGGGTTAGAGTGAGATGAAAACTGATGCAGCATTATAATGAATTGAGTATAGTAAGGGTGGCATGGTGGCACTACATTAATTCCAAAATGGAGATAGGATGAAATGTTTTTGTGCCAGATTTTAAGCAATACTTCATAGTAGCTAAAGATGGTAGCAGGCCACCAGCATGATACCTTTGAAGTAGATCCCTGGTTAACAATGGTGTATGTTGATTCCTTCACCTGTTACACGATTTGGATGGATTTTCTTCACATTTGCCACTTTGGGATTGCAAAAGAGCAGTTCCCTGGTGGTTATTTTTCGTATAAATTCTTTCATGTGTATCTTTGCTCGTTGTATAAGAGCTATACTGTATAACTTGAGTGTTCACTAGCATGGCATGTAAAGATGTAGAATGCCTCAACCCGCAAGTATTGGGTGATTCTTTCTTTCTTCTTCAAGGCCTATGTACCATGTCACACCAATGTCTAAGTTTTGAGATCTTTGCATTTTGTACATCGGAAGGATTCTTGTATCATCAGTTTGATAAAAGATAGTACATACAGCTAAAACAGCTTCAAAAAAAAAAAA]
[-] EMBL CA761074 [AATGCAATATACATTAATAACAGACTAACAGTGACATGAGATTCACTACATTCTACATTTCTGGGATTTTGGAGCAACAGAACTTTCGGGAACAAAGAGGGTTAGAGTGAGATGAAAACTGATGCAGCATTATAATGAATTGAGTATAGTAAGGGTGGCATGGTGGCACTACATTAATTCCAAAATGGAGATAGGATGAAATGTTTTTGTGCCAGATTTTAAGCAATACTTCATAGTAGCTAAAGATGGTAGCAGGCCACCAGCATGATACCTTTGAAGTAGATCCCTGGTTAACAATGGTGTATGTTGATTCCTTCACCTGTTACACGATTTGGATGGATTTTCTTCACATTTGCCACTTTGGGATTGCAAAAGAGCAGTTCCCTGGTGGTTATTTTTCGTATAAATTCTTTCATGTGTATCTTTGCTCGTTGTATAAGAGCTATACTGTATAACTTGAGTGTTCACTAGCATGGCATGTAAAGATGTAGAATGCCTCAACCCGCAAGTATTGGGTGATTCTTTCTTTCTTCTTCAAGGCCTATGTACCATGTCACACCAATGTCTAAGTTTTGAGATCTTTGCATTTTGTACATCGGAAGGATTCTTGTATCATCAGTTTGATAAAAGATAGTACATACAGCTAAAACAGCTTCAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2529#0 AACGGGGAAAGGGTTTATGACCANGAATGCAATATACATTAATANCCAGGTAACA-TGA- 58
consensus_2529#1 -------------------------AATGCAATATACATTAATAACAGACTAACAGTGAC 35
******************* * ***** ***
consensus_2529#0 ---AGNTTCACCACATTTCTANATTTCTGGGATTTTGGAGCACCAGAACTTTCGGAACCA 115
consensus_2529#1 ATGAGATTCACTACATT-CTACATTTCTGGGATTTTGGAGCAACAGAACTTTCGGGAACA 94
** ***** ***** *** ******************** ************ * **
consensus_2529#0 AAGAGGGTTAGAGTGAGATAAAATCTGAATGCAGCATTATAATGAATTGAGTATAGTAAG 175
consensus_2529#1 AAGAGGGTTAGAGTGAGATGAAAACTGA-TGCAGCATTATAATGAATTGAGTATAGTAAG 153
******************* *** **** *******************************
consensus_2529#0 GGTGGCATGGTGGCACTACATTAATTCCAAAATGGAGATAGTATGAAATGTTTTTGTGCC 235
consensus_2529#1 GGTGGCATGGTGGCACTACATTAATTCCAAAATGGAGATAGGATGAAATGTTTTTGTGCC 213
***************************************** ******************
consensus_2529#0 AGATTTTAAGCAATACTTCATAGTAGCTAAAGATGGTAGCAGGCCACCAGCATGATACCT 295
consensus_2529#1 AGATTTTAAGCAATACTTCATAGTAGCTAAAGATGGTAGCAGGCCACCAGCATGATACCT 273
************************************************************
consensus_2529#0 TTGAAGTAGATCCCTGGTTAACAATGGTGTATGTTGATTCCTTCACCTTTTACACGATTT 355
consensus_2529#1 TTGAAGTAGATCCCTGGTTAACAATGGTGTATGTTGATTCCTTCACCTGTTACACGATTT 333
************************************************ ***********
consensus_2529#0 GGATGGATCTTCTTCACATTTACCACTTTAGGATTGCAAAAGTGCAGTTCCCTGGTGGTC 415
consensus_2529#1 GGATGGATTTTCTTCACATTTGCCACTTTGGGATTGCAAAAGAGCAGTTCCCTGGTGGTT 393
******** ************ ******* ************ ****************
consensus_2529#0 ATTTTTTTCGTATAAATTCTTTCATGTGTATCTTTGCTCGTTGTATAAGAGCTATACTGT 475
consensus_2529#1 ATTTTT--CGTATAAATTCTTTCATGTGTATCTTTGCTCGTTGTATAAGAGCTATACTGT 451
****** ****************************************************
consensus_2529#0 ATAACTTGGGTGTTGACTGGCATGGCATGTACAGATGTAGAATGCCTTAACCCGAAAGCA 535
consensus_2529#1 ATAACTTGAGTGTTCACTAGCATGGCATGTAAAGATGTAGAATGCCTCAACCCGCAAGTA 511
******** ***** *** ************ *************** ****** *** *
consensus_2529#0 TTGGGTGATTCTTTCTTTCTTCTTCAAGGCTGAGATGTACCATGTCACACCAATGTC-AA 594
consensus_2529#1 TTGGGTGATTCTTTCTTTCTTCTTCAAGGCCT--ATGTACCATGTCACACCAATGTCTAA 569
****************************** *********************** **
consensus_2529#0 GTTTCGAGATCTTTGCATTTTGTACATCGGAAGGATTCTTGTATCATCAGTTTGATAAAA 654
consensus_2529#1 GTTTTGAGATCTTTGCATTTTGTACATCGGAAGGATTCTTGTATCATCAGTTTGATAAAA 629
**** *******************************************************
consensus_2529#0 GATA---CATAGAGCTAAAGCAGACGACGAAACATTGCAAAAAA 695
consensus_2529#1 GATAGTACATACAGCTAAAACAG-CTTCAAAAAA----AAAAAA 668
**** **** ******* *** * * *** * ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||