These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1265 fasta sequence [TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTGAACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCGCCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAGGAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCATTCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAAGAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGTCGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTACTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTACAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGGATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGATCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCAGAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAGAAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAGCCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGATGGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTGAATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTGTTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAATGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCTGGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCATTCAAT] [+] EMBL AK068870 [TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTGAACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCGCCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAGGAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCATTCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAAGAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGTCGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTACTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTACAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGGATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGATCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCAGAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAGAAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAGCCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGATGGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTGAATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTGTTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAATGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCTGGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCATTCAAT] consensusID : consensus_253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [TGATCTTGCGGCTTAATCGAGTTCTAATGCGCAGGTGCTAACGTGTCAGATTGTCGAAAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT] [+] EMBL AA750519 [TGATCTTGCGGCTTAATCGAGTTCTAATGCGCAGGTGCTAACGTGTCAGATTGTCGAAAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_253#0 TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTG 60 consensus_253#1 ------------------------------------------------------------ consensus_253#0 AACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCG 120 consensus_253#1 ------------------------------------------------------------ consensus_253#0 CCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAG 180 consensus_253#1 ------------------------------------------------------------ consensus_253#0 GAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCAT 240 consensus_253#1 ------------------------------------------------------------ consensus_253#0 TCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAA 300 consensus_253#1 ------------------------------------------------------------ consensus_253#0 GAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGT 360 consensus_253#1 -TGATCTTGCGGCTTAAT-CGAGTTCTAATGCGCAG----GTGCTAACGTGTCAGATTGT 54 *** ** * * **** ***** ******************** consensus_253#0 CGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAAT 420 consensus_253#1 CGAAAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAAT 114 *** ******************************************************** consensus_253#0 AAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAA 480 consensus_253#1 AAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAA 174 ************************************************************ consensus_253#0 GATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTA 540 consensus_253#1 GATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT---------- 224 ************************************************** consensus_253#0 CTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTA 600 consensus_253#1 ------------------------------------------------------------ consensus_253#0 CAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGG 660 consensus_253#1 ------------------------------------------------------------ consensus_253#0 ATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGA 720 consensus_253#1 ------------------------------------------------------------ consensus_253#0 TCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCA 780 consensus_253#1 ------------------------------------------------------------ consensus_253#0 GAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAG 840 consensus_253#1 ------------------------------------------------------------ consensus_253#0 AAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAG 900 consensus_253#1 ------------------------------------------------------------ consensus_253#0 CCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGAT 960 consensus_253#1 ------------------------------------------------------------ consensus_253#0 GGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTG 1020 consensus_253#1 ------------------------------------------------------------ consensus_253#0 AATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTG 1080 consensus_253#1 ------------------------------------------------------------ consensus_253#0 TTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAA 1140 consensus_253#1 ------------------------------------------------------------ consensus_253#0 TGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCT 1200 consensus_253#1 ------------------------------------------------------------ consensus_253#0 GGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCAT 1260 consensus_253#1 ------------------------------------------------------------ consensus_253#0 TCAAT 1265 consensus_253#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||