Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 253 cluster # 253       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_253#0 length = 1265 sequences # 1  
consensus_253#1 length = 224 sequences # 1  

consensusID : consensus_253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1265
fasta sequence
                              [TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTGAACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCGCCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAGGAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCATTCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAAGAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGTCGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTACTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTACAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGGATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGATCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCAGAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAGAAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAGCCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGATGGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTGAATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTGTTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAATGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCTGGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCATTCAAT]

[+] EMBL AK068870             [TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTGAACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCGCCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAGGAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCATTCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAAGAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGTCGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTACTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTACAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGGATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGATCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCAGAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAGAAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAGCCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGATGGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTGAATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTGTTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAATGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCTGGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCATTCAAT]


>consensus_253#0 TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTG AACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCG CCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAG GAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCAT TCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAA GAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGT CGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAAT AAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAA GATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTA CTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTA CAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGG ATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGA TCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCA GAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAG AAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAG CCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGAT GGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTG AATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTG TTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAA TGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCT GGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCAT TCAAT



consensusID : consensus_253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence
                              [TGATCTTGCGGCTTAATCGAGTTCTAATGCGCAGGTGCTAACGTGTCAGATTGTCGAAAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT]

[+] EMBL AA750519             [TGATCTTGCGGCTTAATCGAGTTCTAATGCGCAGGTGCTAACGTGTCAGATTGTCGAAAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT]


>consensus_253#1 TGATCTTGCGGCTTAATCGAGTTCTAATGCGCAGGTGCTAACGTGTCAGATTGTCGAAAG GATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAG ATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACC GTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_253#0      TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTG 60
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      AACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCG 120
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      CCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAG 180
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      GAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCAT 240
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      TCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAA 300
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      GAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGT 360
consensus_253#1      -TGATCTTGCGGCTTAAT-CGAGTTCTAATGCGCAG----GTGCTAACGTGTCAGATTGT 54
                              *** **    * * ****  *****      ********************

consensus_253#0      CGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAAT 420
consensus_253#1      CGAAAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAAT 114
                     *** ********************************************************

consensus_253#0      AAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAA 480
consensus_253#1      AAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAA 174
                     ************************************************************

consensus_253#0      GATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTA 540
consensus_253#1      GATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT---------- 224
                     **************************************************          

consensus_253#0      CTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTA 600
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      CAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGG 660
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      ATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGA 720
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      TCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCA 780
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      GAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAG 840
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      AAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAG 900
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      CCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGAT 960
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      GGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTG 1020
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      AATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTG 1080
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      TTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAA 1140
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      TGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCT 1200
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      GGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCAT 1260
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      TCAAT 1265
consensus_253#1      -----
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)