These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1454 fasta sequence [CACATGTCATCCTCATTCCCTCCTCCTTTCTCTCTCCCCTCTTCTCGACGCCGACGCTTCCCATCCACGCATTCCTCGCCGCGGTGGCCGCCGACGCCGACCCACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGTCCAGCCGCGGCGTACAGGTCGCCAACGCCGGCGGGGTCTACTCCACCGATGTCGCCGACTACGCTGTCGGCCTCCTGTTCGACGTTCTCGGCCACGTCTCCGTCGGAGACCGCTACGTCCGGCGTGGCCTCTGGCCGGAGCGCGGTGATTTCGTCCCCCTCGGATCCAAGATCGGCGGGAAGCGAGTCGGCATCATCGGGCTGGGCAACATCGGCTCGGCGATTGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGTGAAGGGAGGACGTGGTCTACACCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCTCGTCGTGGCGTGCACGCTGACGGCGGAGACACGGCACATCGTGGACCGGGGCGTGCTAGACGCGCTGGGGGAGCTTGGCGTGGTCGCCCGCTTCTGCTATGGGGAGCAGTTGGATCTCCATCAGGTTGCAGGCTTGCAGCTGCAGATGCAGATGCAGATGCAGATAAAAAGATCGAGGTGCGCTCGGGCCTGGTTGAGTATTTCCCAGCCCGGGCCGCAAACGACCGCTGGGCAACTGGGTGGTCGCAGTGCTGGTTCTACCTCGATGTCGGGGTGGACTCCGGGCTGGCTTCCACCAACAAGATCTACTTCCGCCACCTCCCGGAGGTCAATGCGGACGACGAAGACCTCGACCCGCTGCACCAGTCTCTCCGCAGGATGGCGAAGTGGCTCAGCATGCCGGACCTGACGGAGGAATTCGTCATGCTTCGGATCATTCCGCTCTGGAATGGCTGGGTCCACGACCTTACTTCGGGAGACGAAGACAAGGCCGGGGCCTATGTGGGCCCGGTGACCTCCTCAACTTTGCTGACGCCGGTCTCTACGGCCATTACGGAGGCCGAGAAGATCCTTGGGAAGCCGGTCGTAAAGGAGAAGCAAGAGCGGACCGAACGGACCAGCTCTTGGGAGAGGACCAACCGGGTGGCAGCCCGGTTCAACTTGCAACTTCCGGCCCTCCCGTCCTTGAGCGAGGCCGAGGTGGAGGCCGAGGTGGCAGAGGCCGCCAAGTCCACTGGCAAGCGGAAAGGTTCACGAGGCGGTGGCGGAGGCTGGCGCACTAAGCGGACCAGGGGAAATGATTCCCCAATCCCGGCAATTCCTCTCCGGGCTGTGGCTCCCAACTATCTGCACTCGTAGGCTTCTAGCAGCCCGACGGCGGCTGCAGACGTGGTTTCTTCCTCCGCCGACCCCATCGTGATTCCCGCAGACTCCGAGGGCTCGGGGGAGTCTGCCTGGACAACCGCGTTTCCCGGTA] [+] EMBL AK105557 [CACATGTCATCCTCATTCCCTCCTCCTTTCTCTCTCCCCTCTTCTCGACGCCGACGCTTCCCATCCACGCATTCCTCGCCGCGGTGGCCGCCGACGCCGACCCACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGTCCAGCCGCGGCGTACAGGTCGCCAACGCCGGCGGGGTCTACTCCACCGATGTCGCCGACTACGCTGTCGGCCTCCTGTTCGACGTTCTCGGCCACGTCTCCGTCGGAGACCGCTACGTCCGGCGTGGCCTCTGGCCGGAGCGCGGTGATTTCGTCCCCCTCGGATCCAAGATCGGCGGGAAGCGAGTCGGCATCATCGGGCTGGGCAACATCGGCTCGGCGATTGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGTGAAGGGAGGACGTGGTCTACACCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCTCGTCGTGGCGTGCACGCTGACGGCGGAGACACGGCACATCGTGGACCGGGGCGTGCTAGACGCGCTGGGGGAGCTTGGCGTGGTCGCCCGCTTCTGCTATGGGGAGCAGTTGGATCTCCATCAGGTTGCAGGCTTGCAGCTGCAGATGCAGATGCAGATGCAGATAAAAAGATCGAGGTGCGCTCGGGCCTGGTTGAGTATTTCCCAGCCCGGGCCGCAAACGACCGCTGGGCAACTGGGTGGTCGCAGTGCTGGTTCTACCTCGATGTCGGGGTGGACTCCGGGCTGGCTTCCACCAACAAGATCTACTTCCGCCACCTCCCGGAGGTCAATGCGGACGACGAAGACCTCGACCCGCTGCACCAGTCTCTCCGCAGGATGGCGAAGTGGCTCAGCATGCCGGACCTGACGGAGGAATTCGTCATGCTTCGGATCATTCCGCTCTGGAATGGCTGGGTCCACGACCTTACTTCGGGAGACGAAGACAAGGCCGGGGCCTATGTGGGCCCGGTGACCTCCTCAACTTTGCTGACGCCGGTCTCTACGGCCATTACGGAGGCCGAGAAGATCCTTGGGAAGCCGGTCGTAAAGGAGAAGCAAGAGCGGACCGAACGGACCAGCTCTTGGGAGAGGACCAACCGGGTGGCAGCCCGGTTCAACTTGCAACTTCCGGCCCTCCCGTCCTTGAGCGAGGCCGAGGTGGAGGCCGAGGTGGCAGAGGCCGCCAAGTCCACTGGCAAGCGGAAAGGTTCACGAGGCGGTGGCGGAGGCTGGCGCACTAAGCGGACCAGGGGAAATGATTCCCCAATCCCGGCAATTCCTCTCCGGGCTGTGGCTCCCAACTATCTGCACTCGTAGGCTTCTAGCAGCCCGACGGCGGCTGCAGACGTGGTTTCTTCCTCCGCCGACCCCATCGTGATTCCCGCAGACTCCGAGGGCTCGGGGGAGTCTGCCTGGACAACCGCGTTTCCCGGTA] consensusID : consensus_2545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1081 fasta sequence [AAGCAACAAATCACCAAAAAAAAAGAAAGAGAAATGTCGTCGCCGCCGGTGCTCTTGCTGTGCCGGCTGTTCCCGGGCACCTTCACCGACGTCGCCCACCGATTCCGCCTCCTCGACTTCTACGCCTCCGCGCTTCCCATCCACGCCTTCCTCGCCGCCGTGGCCGCCCACGCCGACCCACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGCCCATCCCCGTCGGCGCCGAGCTGCTCGACGCCGTCCCCTCCCTCCGCTGCATCATCACCGTCAGCGCCGGGACCAACCACATCGACCTCCGCGAGTGCGCGCGCCGCGGCGTGCAGGTCGCCAACGCCGGCGGGATCTACTCCACCGACGTCGCCGACTACGCTGTCGGCCTCCTGCTCGACGTTCTCCGCCACGTCTCCGCCGGAGACCGCTTCGTCCGGCGCGGCCTCTGTCCGGAGCAGCGCGGCGGCGATTTCCTCCCCCTCGGATCCAAGATCGGCGGGAGGCGCGTCGGCATCATCGGCCTCGGCAGCATAGGGTCGGCGATCGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGCGAAGGGAGGACGTGGCCTACGCCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCTCGTCGTGGCGTGCGCGCTGACGGCGGAGACGCGGCGCATCGTGGACCGGGGCGTGCTGGACGCGCTGGGGGAGCGCGGCGTGGTCGTGAACGTGGCGCGCGGCGCCAACGTCGACGAGGCGGAGCTGGTGCGCGCGCTGGCGGAGGGCAGGGTCGCCGGCGCGGGGTTGGAAGTGTTCGACGACGAGCCCAACGTGCCGCCGGAGCTGTGGGCCATGGACAACGTGGTGCTCACCCCGCACCAGGCCATCTTCACCCCGGAATCCATGGCCGACCTGAGCCGCGTCGTCCTCGCCAACCTCGACGCGTTCTTCGCCGGCGAGCCGCTGCTTACGCGAGTGGAAGCCTCGGAGTGACGCACACTTGCCCTGTTAGTCCAACAATTGACTTATTCTTATTATCATCATTATTGCTATAAAATGT] [+] EMBL AK070553 [AAGCAACAAATCACCAAAAAAAAAGAAAGAGAAATGTCGTCGCCGCCGGTGCTCTTGCTGTGCCGGCTGTTCCCGGGCACCTTCACCGACGTCGCCCACCGATTCCGCCTCCTCGACTTCTACGCCTCCGCGCTTCCCATCCACGCCTTCCTCGCCGCCGTGGCCGCCCACGCCGACCCACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGCCCATCCCCGTCGGCGCCGAGCTGCTCGACGCCGTCCCCTCCCTCCGCTGCATCATCACCGTCAGCGCCGGGACCAACCACATCGACCTCCGCGAGTGCGCGCGCCGCGGCGTGCAGGTCGCCAACGCCGGCGGGATCTACTCCACCGACGTCGCCGACTACGCTGTCGGCCTCCTGCTCGACGTTCTCCGCCACGTCTCCGCCGGAGACCGCTTCGTCCGGCGCGGCCTCTGTCCGGAGCAGCGCGGCGGCGATTTCCTCCCCCTCGGATCCAAGATCGGCGGGAGGCGCGTCGGCATCATCGGCCTCGGCAGCATAGGGTCGGCGATCGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGCGAAGGGAGGACGTGGCCTACGCCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCTCGTCGTGGCGTGCGCGCTGACGGCGGAGACGCGGCGCATCGTGGACCGGGGCGTGCTGGACGCGCTGGGGGAGCGCGGCGTGGTCGTGAACGTGGCGCGCGGCGCCAACGTCGACGAGGCGGAGCTGGTGCGCGCGCTGGCGGAGGGCAGGGTCGCCGGCGCGGGGTTGGAAGTGTTCGACGACGAGCCCAACGTGCCGCCGGAGCTGTGGGCCATGGACAACGTGGTGCTCACCCCGCACCAGGCCATCTTCACCCCGGAATCCATGGCCGACCTGAGCCGCGTCGTCCTCGCCAACCTCGACGCGTTCTTCGCCGGCGAGCCGCTGCTTACGCGAGTGGAAGCCTCGGAGTGACGCACACTTGCCCTGTTAGTCCAACAATTGACTTATTCTTATTATCATCATTATTGCTATAAAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2545#0 ------------------------------------------------------------ consensus_2545#1 AAGCAACAAATCACCAAAAAAAAAGAAAGAGAAATGTCGTCGCCGCCGGTGCTCTTGCTG 60 consensus_2545#0 -----------------CACATGTCATCCTCATTCCCTCCTCCTTTCTCTCTCCCCTCTT 43 consensus_2545#1 TGCCGGCTGTTCCCGGGCACCT-TCACCGACGTCGCCCACCGATTCCGCCTCCTCGACTT 119 *** * *** * * * ** * ** * * * * *** consensus_2545#0 CTCGACGCCGACGCTTCCCATCCACGCATTCCTCGCCGCGGTGGCCGCCGACGCCGACCC 103 consensus_2545#1 CTACGCCTCCGCGCTTCCCATCCACGCCTTCCTCGCCGCCGTGGCCGCCCACGCCGACCC 179 ** * * **************** *********** ********* ********** consensus_2545#0 ACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGTCCA------------------------- 138 consensus_2545#1 ACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGCCCATCCCCGTCGGCGCCGAGCTGCTCGA 239 ******************************* *** consensus_2545#0 ------------------------------------------------------------ consensus_2545#1 CGCCGTCCCCTCCCTCCGCTGCATCATCACCGTCAGCGCCGGGACCAACCACATCGACCT 299 consensus_2545#0 --------------GCCGCGGCGTACAGGTCGCCAACGCCGGCGGGGTCTACTCCACCGA 184 consensus_2545#1 CCGCGAGTGCGCGCGCCGCGGCGTGCAGGTCGCCAACGCCGGCGGGATCTACTCCACCGA 359 ********** ********************* ************* consensus_2545#0 TGTCGCCGACTACGCTGTCGGCCTCCTGTTCGACGTTCTCGGCCACGTCTCCGTCGGAGA 244 consensus_2545#1 CGTCGCCGACTACGCTGTCGGCCTCCTGCTCGACGTTCTCCGCCACGTCTCCGCCGGAGA 419 *************************** *********** ************ ****** consensus_2545#0 CCGCTACGTCCGGCGTGGCCTCTGGCCGGAGC------GCGGTGATTTCGTCCCCCTCGG 298 consensus_2545#1 CCGCTTCGTCCGGCGCGGCCTCTGTCCGGAGCAGCGCGGCGGCGATTTCCTCCCCCTCGG 479 ***** ********* ******** ******* **** ****** ********** consensus_2545#0 ATCCAAGATCGGCGGGAAGCGAGTCGGCATCATCGGGCTGGGCAACATCGGCTCGGCGAT 358 consensus_2545#1 ATCCAAGATCGGCGGGAGGCGCGTCGGCATCATCGGCCTCGGCAGCATAGGGTCGGCGAT 539 ***************** *** ************** ** **** *** ** ******** consensus_2545#0 TGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGTGAAGGGA 418 consensus_2545#1 CGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGCGAAGGGA 599 *************************************************** ******* consensus_2545#0 GGACGTGGTCTACACCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCT 478 consensus_2545#1 GGACGTGGCCTACGCCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCT 659 ******** **** ********************************************** consensus_2545#0 CGTCGTGGCGTGCACGCTGACGGCGGAGACACGGCACATCGTGGACCGGGGCGTGCTAGA 538 consensus_2545#1 CGTCGTGGCGTGCGCGCTGACGGCGGAGACGCGGCGCATCGTGGACCGGGGCGTGCTGGA 719 ************* **************** **** ********************* ** consensus_2545#0 CGCGCTGGGGGAGCTTGGCGTGGTCGCCCGCTTCTGCTATGGGGAGCAGTTGGATCTCCA 598 consensus_2545#1 CGCGCTGGGGGAGCGCGGCGTGGTCGTGAAC-------GTGGCGCGCGGCGCCAACGTCG 772 ************** ********** * *** * ** * * * * consensus_2545#0 TCAGGTTGCAGGCTTGCAGCTGCAGATGCAGATGCAGATGCAGATAAAAAGATCGAGGTG 658 consensus_2545#1 ACGAG----------------GCGGA-GCTGGTGCGCGCGCTGGCGGAGGG--CAGGGT- 812 * * ** ** ** * *** ** * * * * *** consensus_2545#0 CGCTCGGGCCTGGTTGAGTATTTCCCAGCCCGGGCCGCAAACGACCGCTGGGCAACTGGG 718 consensus_2545#1 CGCCGGCGCGGGGTTGGAAGTGTTCGACGACGAGCC-CAACGTGCCGCCGGAGCTGTGGG 871 *** * ** ***** * * * * ** *** *** **** ** **** consensus_2545#0 TGGTCGCAGTGCTGGTTCTACCTCGATGTCGGGGTGGACTCCGGGCTGGCTTCCACCAAC 778 consensus_2545#1 CCATGGACAACGTGGTGCTCACCCCGCACCAGGCCAT-CTTCACCCCGGAATCCATGGCC 930 * * **** ** * * * ** ** * * ** **** * consensus_2545#0 AAGATCTACTTCCGCCACCTCCCGGAGGTCAATGCGGACGACGAAGACCTCGACCCGCTG 838 consensus_2545#1 GACCTGAGCCGCGTCGTCCTCGCCAACCTCGACGCGTTCTTCGCCGG---CGAGCCGCTG 987 * * * * * **** * * ** * *** * ** * *** ****** consensus_2545#0 CACCAGTCTCTCCGCAGGATGGCGAAGTGGCTCA-GCATGCCGGACCTGACGGAGGAATT 897 consensus_2545#1 C-TTACGCGAGTGGAAGCCT--CGGAGTGACGCACACTTGCCCTGTTAGTCCAACAATTG 1044 * * * * ** * ** **** * ** * **** * * * * * consensus_2545#0 CGTCATGCTTCGGATCATT----CCGCTCTGGAATGGCTGGGTCCACGACCTTACTTCGG 953 consensus_2545#1 ACTTATTCTTATTATCATCATTATTGCTATAAAATGT----------------------- 1081 * ** *** ***** *** * **** consensus_2545#0 GAGACGAAGACAAGGCCGGGGCCTATGTGGGCCCGGTGACCTCCTCAACTTTGCTGACGC 1013 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 CGGTCTCTACGGCCATTACGGAGGCCGAGAAGATCCTTGGGAAGCCGGTCGTAAAGGAGA 1073 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 AGCAAGAGCGGACCGAACGGACCAGCTCTTGGGAGAGGACCAACCGGGTGGCAGCCCGGT 1133 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 TCAACTTGCAACTTCCGGCCCTCCCGTCCTTGAGCGAGGCCGAGGTGGAGGCCGAGGTGG 1193 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 CAGAGGCCGCCAAGTCCACTGGCAAGCGGAAAGGTTCACGAGGCGGTGGCGGAGGCTGGC 1253 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 GCACTAAGCGGACCAGGGGAAATGATTCCCCAATCCCGGCAATTCCTCTCCGGGCTGTGG 1313 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 CTCCCAACTATCTGCACTCGTAGGCTTCTAGCAGCCCGACGGCGGCTGCAGACGTGGTTT 1373 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 CTTCCTCCGCCGACCCCATCGTGATTCCCGCAGACTCCGAGGGCTCGGGGGAGTCTGCCT 1433 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 GGACAACCGCGTTTCCCGGTA 1454 consensus_2545#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||