cluster # 2547

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Oryza sativa
cluster # 2547 cluster # 2547 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2547#0 length = 771 sequences # 1

consensus_2547#1 length = 270 sequences # 1

consensusID : consensus_2547#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 771
fasta sequence

                              [TCTTTTTTTTGATGGTAAAGGACAGGTGATCATTGATAAGGCACAGAATGCCTGATTGCCTGTAGGCTTTTGTTCAATGTTGACATGATTCCACACATGAAAGATCAGTAGTACAAAGTATGCACACTGCTATATAAGCTACTATGACAAAACTGTGTCCAGAACTCCAGACGCCAAGCGTGACCCTGAAACACTGGGATGCAACAATCCTATTCTTTTTTGTCACAAACCCACGATTTTTTTTCTTGTATTCAGACAATTGTGATGCATACAACAACCAAGAGTACACAACTAAGGCTTGCCACTAGCTCTTGCGCAGGTATTTGCTCACTTGGGCTGCAAGCGCTACAGATTTGGCATTGATGTCGTTCATCAGGTACTCCCTTTCGGCGCGACGGCGTTGCTGTCGTTCTCTCTTGGCTCTCTTTGGGGCCAACCTTGCTTCTCTCTCCACATAGGCTAGCCTGAACTTCTCGGCGATTGGTATTTCAGGGGGCGCATTTGGGTTGGTTGGAACGGTGGGTCTTCGAGGGGCGGCAGCAACAGCCCATGTTTTGGGGTCAATATCTGCGATTATGGAGTGATCCAGTGGTACACTTGCCAGAGCTTCAGCTGGGACCTTGTGTCCACGAAGGTCAAAAGGTGATGGCTGTGGGTTGACAGTAATACGAGGGCATTCCATAGATATAATTTCCTTTGAGTTATCATCTATCTTTGGCCAAACTAGCCATCTTAAGGACTCTGCACCCCCGCCAATTTCTACCGTATCAA]

[+] EMBL CB672283             [TCTTTTTTTTGATGGTAAAGGACAGGTGATCATTGATAAGGCACAGAATGCCTGATTGCCTGTAGGCTTTTGTTCAATGTTGACATGATTCCACACATGAAAGATCAGTAGTACAAAGTATGCACACTGCTATATAAGCTACTATGACAAAACTGTGTCCAGAACTCCAGACGCCAAGCGTGACCCTGAAACACTGGGATGCAACAATCCTATTCTTTTTTGTCACAAACCCACGATTTTTTTTCTTGTATTCAGACAATTGTGATGCATACAACAACCAAGAGTACACAACTAAGGCTTGCCACTAGCTCTTGCGCAGGTATTTGCTCACTTGGGCTGCAAGCGCTACAGATTTGGCATTGATGTCGTTCATCAGGTACTCCCTTTCGGCGCGACGGCGTTGCTGTCGTTCTCTCTTGGCTCTCTTTGGGGCCAACCTTGCTTCTCTCTCCACATAGGCTAGCCTGAACTTCTCGGCGATTGGTATTTCAGGGGGCGCATTTGGGTTGGTTGGAACGGTGGGTCTTCGAGGGGCGGCAGCAACAGCCCATGTTTTGGGGTCAATATCTGCGATTATGGAGTGATCCAGTGGTACACTTGCCAGAGCTTCAGCTGGGACCTTGTGTCCACGAAGGTCAAAAGGTGATGGCTGTGGGTTGACAGTAATACGAGGGCATTCCATAGATATAATTTCCTTTGAGTTATCATCTATCTTTGGCCAAACTAGCCATCTTAAGGACTCTGCACCCCCGCCAATTTCTACCGTATCAA]




>consensus_2547#0
TCTTTTTTTTGATGGTAAAGGACAGGTGATCATTGATAAGGCACAGAATGCCTGATTGCC
TGTAGGCTTTTGTTCAATGTTGACATGATTCCACACATGAAAGATCAGTAGTACAAAGTA
TGCACACTGCTATATAAGCTACTATGACAAAACTGTGTCCAGAACTCCAGACGCCAAGCG
TGACCCTGAAACACTGGGATGCAACAATCCTATTCTTTTTTGTCACAAACCCACGATTTT
TTTTCTTGTATTCAGACAATTGTGATGCATACAACAACCAAGAGTACACAACTAAGGCTT
GCCACTAGCTCTTGCGCAGGTATTTGCTCACTTGGGCTGCAAGCGCTACAGATTTGGCAT
TGATGTCGTTCATCAGGTACTCCCTTTCGGCGCGACGGCGTTGCTGTCGTTCTCTCTTGG
CTCTCTTTGGGGCCAACCTTGCTTCTCTCTCCACATAGGCTAGCCTGAACTTCTCGGCGA
TTGGTATTTCAGGGGGCGCATTTGGGTTGGTTGGAACGGTGGGTCTTCGAGGGGCGGCAG
CAACAGCCCATGTTTTGGGGTCAATATCTGCGATTATGGAGTGATCCAGTGGTACACTTG
CCAGAGCTTCAGCTGGGACCTTGTGTCCACGAAGGTCAAAAGGTGATGGCTGTGGGTTGA
CAGTAATACGAGGGCATTCCATAGATATAATTTCCTTTGAGTTATCATCTATCTTTGGCC
AAACTAGCCATCTTAAGGACTCTGCACCCCCGCCAATTTCTACCGTATCAA

consensusID : consensus_2547#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [AGNCACAGATTGCCTGGATGGCCTGTAGGCTTTTGTCCAATGTTGACATAATTCCACACATGAAAGATCAGTAGTACAAAGTATGCACACTGCTATATAAGCTACTTTGACANANCTGTTGCCAGAACTCCAGACGACAAGCGTGGNCCCTGNAACACTGGGNTGNAACATTCCGATTCTTTTTTGGCACANACCCACGTTTNTTTTTGCTGGGAATTCAGACAATTGTGANTGCATACACCAACCAAAGGGGTACACACNTGGAGGNTT]

[-] EMBL D42775               [AGNCACAGATTGCCTGGATGGCCTGTAGGCTTTTGTCCAATGTTGACATAATTCCACACATGAAAGATCAGTAGTACAAAGTATGCACACTGCTATATAAGCTACTTTGACANANCTGTTGCCAGAACTCCAGACGACAAGCGTGGNCCCTGNAACACTGGGNTGNAACATTCCGATTCTTTTTTGGCACANACCCACGTTTNTTTTTGCTGGGAATTCAGACAATTGTGANTGCATACACCAACCAAAGGGGTACACACNTGGAGGNTT]




>consensus_2547#1
AGNCACAGATTGCCTGGATGGCCTGTAGGCTTTTGTCCAATGTTGACATAATTCCACACA
TGAAAGATCAGTAGTACAAAGTATGCACACTGCTATATAAGCTACTTTGACANANCTGTT
GCCAGAACTCCAGACGACAAGCGTGGNCCCTGNAACACTGGGNTGNAACATTCCGATTCT
TTTTTGGCACANACCCACGTTTNTTTTTGCTGGGAATTCAGACAATTGTGANTGCATACA
CCAACCAAAGGGGTACACACNTGGAGGNTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2547#0      TCTTTTTTTTGATGGTAAAGGACAGGTGATCATTGATAAGGCACAGAATGCCTG-ATTGC 59
consensus_2547#1      --------------------------------------AGNCACAGATTGCCTGGATGGC 22
                                                            ** ****** ****** ** **

consensus_2547#0      CTGTAGGCTTTTGTTCAATGTTGACATGATTCCACACATGAAAGATCAGTAGTACAAAGT 119
consensus_2547#1      CTGTAGGCTTTTGTCCAATGTTGACATAATTCCACACATGAAAGATCAGTAGTACAAAGT 82
                      ************** ************ ********************************

consensus_2547#0      ATGCACACTGCTATATAAGCTACTATGACAAAACTGTGTCCAGAACTCCAGACGCCAAGC 179
consensus_2547#1      ATGCACACTGCTATATAAGCTACTTTGACANANCTGTTGCCAGAACTCCAGACGACAAGC 142
                      ************************ ***** * ****  *************** *****

consensus_2547#0      GTG-ACCCTGAAACACTGGGATGCAACAATCCTATTCTTTTTTGTCACAAACCCACGATT 238
consensus_2547#1      GTGGNCCCTGNAACACTGGGNTGNAACATTCCGATTCTTTTTTGGCACANACCCACGTTT 202
                      ***  ***** ********* ** **** *** *********** **** ******* **

consensus_2547#0      TTTTTTCTTGT--ATTCAGACAATTGTGAT-GCATACAACAACCAA--GAGTACACAACT 293
consensus_2547#1      NTTTTTGCTGGGAATTCAGACAATTGTGANTGCATACACCAACCAAAGGGGTACACACNT 262
                       *****  **   ****************  ******* *******  * *******  *

consensus_2547#0      A-AGGCTTGCCACTAGCTCTTGCGCAGGTATTTGCTCACTTGGGCTGCAAGCGCTACAGA 352
consensus_2547#1      GGAGGNTT---------------------------------------------------- 270
                        *** **                                                    

consensus_2547#0      TTTGGCATTGATGTCGTTCATCAGGTACTCCCTTTCGGCGCGACGGCGTTGCTGTCGTTC 412
consensus_2547#1      ------------------------------------------------------------
                                                                                  

consensus_2547#0      TCTCTTGGCTCTCTTTGGGGCCAACCTTGCTTCTCTCTCCACATAGGCTAGCCTGAACTT 472
consensus_2547#1      ------------------------------------------------------------
                                                                                  

consensus_2547#0      CTCGGCGATTGGTATTTCAGGGGGCGCATTTGGGTTGGTTGGAACGGTGGGTCTTCGAGG 532
consensus_2547#1      ------------------------------------------------------------
                                                                                  

consensus_2547#0      GGCGGCAGCAACAGCCCATGTTTTGGGGTCAATATCTGCGATTATGGAGTGATCCAGTGG 592
consensus_2547#1      ------------------------------------------------------------
                                                                                  

consensus_2547#0      TACACTTGCCAGAGCTTCAGCTGGGACCTTGTGTCCACGAAGGTCAAAAGGTGATGGCTG 652
consensus_2547#1      ------------------------------------------------------------
                                                                                  

consensus_2547#0      TGGGTTGACAGTAATACGAGGGCATTCCATAGATATAATTTCCTTTGAGTTATCATCTAT 712
consensus_2547#1      ------------------------------------------------------------
                                                                                  

consensus_2547#0      CTTTGGCCAAACTAGCCATCTTAAGGACTCTGCACCCCCGCCAATTTCTACCGTATCAA 771
consensus_2547#1      -----------------------------------------------------------