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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2249 fasta sequence
[GAAGACTATCGTCGCAATTGTCAGTGTCCACACGTGGTTCAACAAATGGTTTTAATAAATATCAAGGATATGTTGCGGTCCATGGGCAAAGATATACGGTCGTTTCCTCTTCCTGGGGTCGATATGCTACACGACACGACAAATGGTGTCCCTAAGGAGATCATTGAGGAATCCATGATCAAGGTGGACCCTGAGGACACAGCTTTGTGCAACTCCCTCAACACCGAGCAAAGGGCCGCCTACGATGAGATTCTAGCTACAGTTGATCACAACGAAGGAGGCCTATTCTTCATAGATGGCCCAGGAGGCACAGGAAAAACTTTTCTATACAGGGCATTGCTCGCAACAGTTCGTGAACAAGGAAAGATTGCTATCGCGACAGCTACCTCTGGTGTTGCCGCTTCCATAATGCCCGGAGGAAGGACTGCACACTCTCGATTCAAGATACCACTAAGGATAGATGATGGGGCTATTTGTACTTTCACAAAACAAAGTGGAACAGCCAAGTTGCTACAAATGGCATCGTTGATCATTTGGGACGAAGCCTCTATGACTAAGAGGCAAGCGGTGGAGGCACTGGATAATAGTATGCGAGACATAATGGACAAGCCAAACCTTCCATTCGGTGGGAAAACAGTTGTTTGGAGGTGATTTTAGACAAGTTCTCCCCATTGTACGACATGGGTCAAGGGGTCAGATATTAGATGCATCATTGCGGAGGTCCAACTTATGGGGTTGCATGCGTCACTTGCAATTGGTACGCAACATGAGGGCACAAAACGATCCTTGGTTTGTAGAATATCTACTACGGATCGGTAATGGCACTGAAGAGATCAACGATAATGGTGATATACATCTTCCTGACAATATATGTGTGCCATACACAGGGGATGACAGTGACCTAGATAAATTGATGGAGAGTGTTTATCCAACGCTCAATGATTGCCTAGCTGATCCAAATTACATCACATCAAGAGCTATTTTATCCACACGGAACGACTGTGTGGACAACATAAATCTGAAAATGATTGACCGCTTTCAAGGGGAGGAGATGGTGTATCACAGCTTTGATAGTGCGGAAGATGATCCTCATAACTACTATCCCCCAAAATTCCTTAACACTCTTACCCCATATGGACTGCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGACCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGCCATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAATCCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCCGGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGTCGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAGAGCCACCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGACAATCCAAAGAAAAGGAATAGACATTCTGAGCAGAATTTGAATGAGAACAATCCGAAGAAGCATTCTGACAACCTTAAGAGTGGGACATATACAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGTGTATTTGGGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATATGAGATTATTATGAGGAGTTCATACTCTCATGCATAAATATCGATGTGTCACATAACTTCAAAACTTTTGATACATAAGCACTTCATGATAAATTTACCTCCTCTTTCATTTTTCCTAGATAGAAACCATGAATATCGAGGTCATATTAACATTAACAGATTGGAAAGGTACTGACAAAAATGGAATTGCAACAGCACGACAATTCAATTTTCGTTTGTCCCGTTAATAACAAATTTTAACAGTTCAATTTTCGTTTGTCCTGTTTATTATTATAACAGTTGATGTTGAGGGACATGGGAGTGAATAAGACTGCTAGGAAGAAACGGAGAAAAGGAACATGCAGAAGATTCAGTTTCTAGCTAGCCTAGGATTGACTACAATGTCTCAAAATGCAAACTGGTAAGTTAGCTTCTCTTTTCCCGTTGATACCATTGTTTTTGCTACCCTACTAACTCTTAGATTTTTGCAGATTTTCACCCCTGTAGAATACTGCAGTACATGTCCACTACC]
[+] EMBL AK102855 [GAAGACTATCGTCGCAATTGTCAGTGTCCACACGTGGTTCAACAAATGGTTTTAATAAATATCAAGGATATGTTGCGGTCCATGGGCAAAGATATACGGTCGTTTCCTCTTCCTGGGGTCGATATGCTACACGACACGACAAATGGTGTCCCTAAGGAGATCATTGAGGAATCCATGATCAAGGTGGACCCTGAGGACACAGCTTTGTGCAACTCCCTCAACACCGAGCAAAGGGCCGCCTACGATGAGATTCTAGCTACAGTTGATCACAACGAAGGAGGCCTATTCTTCATAGATGGCCCAGGAGGCACAGGAAAAACTTTTCTATACAGGGCATTGCTCGCAACAGTTCGTGAACAAGGAAAGATTGCTATCGCGACAGCTACCTCTGGTGTTGCCGCTTCCATAATGCCCGGAGGAAGGACTGCACACTCTCGATTCAAGATACCACTAAGGATAGATGATGGGGCTATTTGTACTTTCACAAAACAAAGTGGAACAGCCAAGTTGCTACAAATGGCATCGTTGATCATTTGGGACGAAGCCTCTATGACTAAGAGGCAAGCGGTGGAGGCACTGGATAATAGTATGCGAGACATAATGGACAAGCCAAACCTTCCATTCGGTGGGAAAACAGTTGTTTGGAGGTGATTTTAGACAAGTTCTCCCCATTGTACGACATGGGTCAAGGGGTCAGATATTAGATGCATCATTGCGGAGGTCCAACTTATGGGGTTGCATGCGTCACTTGCAATTGGTACGCAACATGAGGGCACAAAACGATCCTTGGTTTGTAGAATATCTACTACGGATCGGTAATGGCACTGAAGAGATCAACGATAATGGTGATATACATCTTCCTGACAATATATGTGTGCCATACACAGGGGATGACAGTGACCTAGATAAATTGATGGAGAGTGTTTATCCAACGCTCAATGATTGCCTAGCTGATCCAAATTACATCACATCAAGAGCTATTTTATCCACACGGAACGACTGTGTGGACAACATAAATCTGAAAATGATTGACCGCTTTCAAGGGGAGGAGATGGTGTATCACAGCTTTGATAGTGCGGAAGATGATCCTCATAACTACTATCCCCCAAAATTCCTTAACACTCTTACCCCATATGGACTGCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGACCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGCCATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAATCCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCCGGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGTCGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAGAGCCACCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGACAATCCAAAGAAAAGGAATAGACATTCTGAGCAGAATTTGAATGAGAACAATCCGAAGAAGCATTCTGACAACCTTAAGAGTGGGACATATACAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGTGTATTTGGGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATATGAGATTATTATGAGGAGTTCATACTCTCATGCATAAATATCGATGTGTCACATAACTTCAAAACTTTTGATACATAAGCACTTCATGATAAATTTACCTCCTCTTTCATTTTTCCTAGATAGAAACCATGAATATCGAGGTCATATTAACATTAACAGATTGGAAAGGTACTGACAAAAATGGAATTGCAACAGCACGACAATTCAATTTTCGTTTGTCCCGTTAATAACAAATTTTAACAGTTCAATTTTCGTTTGTCCTGTTTATTATTATAACAGTTGATGTTGAGGGACATGGGAGTGAATAAGACTGCTAGGAAGAAACGGAGAAAAGGAACATGCAGAAGATTCAGTTTCTAGCTAGCCTAGGATTGACTACAATGTCTCAAAATGCAAACTGGTAAGTTAGCTTCTCTTTTCCCGTTGATACCATTGTTTTTGCTACCCTACTAACTCTTAGATTTTTGCAGATTTTCACCCCTGTAGAATACTGCAGTACATGTCCACTACC]
consensusID : consensus_2556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[TCCNCCAAAATTCCTTAACACTCTTACCCCATATGGACTGCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGACCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGCCATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAATCCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCCGGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGTCGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAGAGCCCCCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGCCAATCCAAAGAAAAGGAATAGCCATTTTGAGCAGAATTTGAATGAGAACAATTCGAAGAAGCATTCTGACACCATTAAGAGTGGGACATATCCAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGTGTATTTTTGGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATATGAGATTATTATGAGGAGTTCATACTCTCATGCATAAAAAAAAAAAAAAAA]
[-] EMBL CA762947 [TCCNCCAAAATTCCTTAACACTCTTACCCCATATGGACTGCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGACCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGCCATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAATCCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCCGGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGTCGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAGAGCCCCCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGCCAATCCAAAGAAAAGGAATAGCCATTTTGAGCAGAATTTGAATGAGAACAATTCGAAGAAGCATTCTGACACCATTAAGAGTGGGACATATCCAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGTGTATTTTTGGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATATGAGATTATTATGAGGAGTTCATACTCTCATGCATAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2556#0 GAAGACTATCGTCGCAATTGTCAGTGTCCACACGTGGTTCAACAAATGGTTTTAATAAAT 60
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 ATCAAGGATATGTTGCGGTCCATGGGCAAAGATATACGGTCGTTTCCTCTTCCTGGGGTC 120
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 GATATGCTACACGACACGACAAATGGTGTCCCTAAGGAGATCATTGAGGAATCCATGATC 180
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 AAGGTGGACCCTGAGGACACAGCTTTGTGCAACTCCCTCAACACCGAGCAAAGGGCCGCC 240
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 TACGATGAGATTCTAGCTACAGTTGATCACAACGAAGGAGGCCTATTCTTCATAGATGGC 300
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 CCAGGAGGCACAGGAAAAACTTTTCTATACAGGGCATTGCTCGCAACAGTTCGTGAACAA 360
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 GGAAAGATTGCTATCGCGACAGCTACCTCTGGTGTTGCCGCTTCCATAATGCCCGGAGGA 420
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 AGGACTGCACACTCTCGATTCAAGATACCACTAAGGATAGATGATGGGGCTATTTGTACT 480
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 TTCACAAAACAAAGTGGAACAGCCAAGTTGCTACAAATGGCATCGTTGATCATTTGGGAC 540
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 GAAGCCTCTATGACTAAGAGGCAAGCGGTGGAGGCACTGGATAATAGTATGCGAGACATA 600
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 ATGGACAAGCCAAACCTTCCATTCGGTGGGAAAACAGTTGTTTGGAGGTGATTTTAGACA 660
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 AGTTCTCCCCATTGTACGACATGGGTCAAGGGGTCAGATATTAGATGCATCATTGCGGAG 720
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 GTCCAACTTATGGGGTTGCATGCGTCACTTGCAATTGGTACGCAACATGAGGGCACAAAA 780
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 CGATCCTTGGTTTGTAGAATATCTACTACGGATCGGTAATGGCACTGAAGAGATCAACGA 840
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 TAATGGTGATATACATCTTCCTGACAATATATGTGTGCCATACACAGGGGATGACAGTGA 900
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 CCTAGATAAATTGATGGAGAGTGTTTATCCAACGCTCAATGATTGCCTAGCTGATCCAAA 960
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 TTACATCACATCAAGAGCTATTTTATCCACACGGAACGACTGTGTGGACAACATAAATCT 1020
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 GAAAATGATTGACCGCTTTCAAGGGGAGGAGATGGTGTATCACAGCTTTGATAGTGCGGA 1080
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 AGATGATCCTCATAACTACTATCCCCCAAAATTCCTTAACACTCTTACCCCATATGGACT 1140
consensus_2556#1 ---------------------TCCNCCAAAATTCCTTAACACTCTTACCCCATATGGACT 39
*** ***********************************
consensus_2556#0 GCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGA 1200
consensus_2556#1 GCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGA 99
************************************************************
consensus_2556#0 CCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGC 1260
consensus_2556#1 CCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGC 159
************************************************************
consensus_2556#0 CATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAAT 1320
consensus_2556#1 CATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAAT 219
************************************************************
consensus_2556#0 CCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCC 1380
consensus_2556#1 CCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCC 279
************************************************************
consensus_2556#0 GGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGT 1440
consensus_2556#1 GGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGT 339
************************************************************
consensus_2556#0 CGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAG 1500
consensus_2556#1 CGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAG 399
************************************************************
consensus_2556#0 AGCCACCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGACAATCCAAAGAAAAG 1560
consensus_2556#1 AGCCCCCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGCCAATCCAAAGAAAAG 459
**** *************************************** ***************
consensus_2556#0 GAATAGACATTCTGAGCAGAATTTGAATGAGAACAATCCGAAGAAGCATTCTGACAACCT 1620
consensus_2556#1 GAATAGCCATTTTGAGCAGAATTTGAATGAGAACAATTCGAAGAAGCATTCTGACACCAT 519
****** **** ************************* ****************** * *
consensus_2556#0 TAAGAGTGGGACATATACAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGT 1680
consensus_2556#1 TAAGAGTGGGACATATCCAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGT 579
**************** *******************************************
consensus_2556#0 GTATTTG-GGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATAT 1739
consensus_2556#1 GTATTTTTGGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATAT 639
****** ****************************************************
consensus_2556#0 GAGATTATTATGAGGAGTTCATACTCTCATGCATAAATATCGATGTGTCACATAACTTCA 1799
consensus_2556#1 GAGATTATTATGAGGAGTTCATACTCTCATGCATAAAAAAAAAAAAAAAA---------- 689
************************************* * * *
consensus_2556#0 AAACTTTTGATACATAAGCACTTCATGATAAATTTACCTCCTCTTTCATTTTTCCTAGAT 1859
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 AGAAACCATGAATATCGAGGTCATATTAACATTAACAGATTGGAAAGGTACTGACAAAAA 1919
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 TGGAATTGCAACAGCACGACAATTCAATTTTCGTTTGTCCCGTTAATAACAAATTTTAAC 1979
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 AGTTCAATTTTCGTTTGTCCTGTTTATTATTATAACAGTTGATGTTGAGGGACATGGGAG 2039
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 TGAATAAGACTGCTAGGAAGAAACGGAGAAAAGGAACATGCAGAAGATTCAGTTTCTAGC 2099
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 TAGCCTAGGATTGACTACAATGTCTCAAAATGCAAACTGGTAAGTTAGCTTCTCTTTTCC 2159
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 CGTTGATACCATTGTTTTTGCTACCCTACTAACTCTTAGATTTTTGCAGATTTTCACCCC 2219
consensus_2556#1 ------------------------------------------------------------
consensus_2556#0 TGTAGAATACTGCAGTACATGTCCACTACC 2249
consensus_2556#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||