These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 994 fasta sequence [GTAGATCGATCGAGCCAGTCGCCCAGTGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGGACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGACCAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTTAGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGTGGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATGCAAATAACAAGGTGCGTATCAATACGACATCCCTATATATATAAAGTAGAAGTTAACTAAACTGCTAATTAGTTTCCGTTTCCACCATCAATTGATACATAGGAAAAGTGCTGGCTTGTTCTTGGGCACTCGATCACAAGAGAAAAATTGGGCGTCCCATGGCTACAGGCAGTGCCCCTCTTTCACTGTGAATAGCCTGCACACGCCAGCCCCTCTCTCTCCTATGCATGCATGCATGTGTGTGTATCGCTCTAACGAGTTTCAAATATTTTCCCTTAAATTAGTTATTATCTCACATATGATCCAATTACACCCATATTTATTAAATTACTAGAAAAAATATCCATGCGTTGCAACGGGAAAATACCTTAAATCACTTAGATCCGTACTTTCCTTTCTCAAAACTTCGGCAAACTCAATTTGAAAATTTGAAAGCGAATTCAACTTTCCCTTTTGAATTACTTTCTTCTTTTACTAGTCTCCCCTTGTTTAAAATTCGTTTAAATTCTCGTATATCAAAATTCACTAAAGATACAAAAGTCCATATAATCACACGTTGTGACCGATGATGGATGAAAAACGGAAGCCCATTAAGATTTTTCTACAAAGTAGGTGGTGAAGATATTCCAGGAGAAAAACAAGATAAAAAGAGGAGAAAAGAGAGGAGATTGAAAGGAGAGGGAGATAATCAAGA] [+] EMBL AK058902 [GTAGATCGATCGAGCCAGTCGCCCAGTGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGGACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGACCAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTTAGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGTGGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATGCAAATAACAAGGTGCGTATCAATACGACATCCCTATATATATAAAGTAGAAGTTAACTAAACTGCTAATTAGTTTCCGTTTCCACCATCAATTGATACATAGGAAAAGTGCTGGCTTGTTCTTGGGCACTCGATCACAAGAGAAAAATTGGGCGTCCCATGGCTACAGGCAGTGCCCCTCTTTCACTGTGAATAGCCTGCACACGCCAGCCCCTCTCTCTCCTATGCATGCATGCATGTGTGTGTATCGCTCTAACGAGTTTCAAATATTTTCCCTTAAATTAGTTATTATCTCACATATGATCCAATTACACCCATATTTATTAAATTACTAGAAAAAATATCCATGCGTTGCAACGGGAAAATACCTTAAATCACTTAGATCCGTACTTTCCTTTCTCAAAACTTCGGCAAACTCAATTTGAAAATTTGAAAGCGAATTCAACTTTCCCTTTTGAATTACTTTCTTCTTTTACTAGTCTCCCCTTGTTTAAAATTCGTTTAAATTCTCGTATATCAAAATTCACTAAAGATACAAAAGTCCATATAATCACACGTTGTGACCGATGATGGATGAAAAACGGAAGCCCATTAAGATTTTTCTACAAAGTAGGTGGTGAAGATATTCCAGGAGAAAAACAAGATAAAAAGAGGAGAAAAGAGAGGAGATTGAAAGGAGAGGGAGATAATCAAGA] consensusID : consensus_2557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [CCAGCGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGGACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGACCAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTTAGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGTGGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATGCAAATAACAAGGGTTTTTGGCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCGGGTACCACTCTCGATGCTGCACCGTGACGAACTTACGCATGTTGGACTCGGAAGTTGGCGGAAGAACACAATAAAGAACGGAGAGGCCAGCAAAGGCTCGTCAAGCGTACGACAGAATCAACGCAATGTCCTAGTTCGCATGTTTTGCCCAAAGCGCCATGTCAAGATGACCATATTCCAGACAACCCTGACATGGATGGAGGCAGCTGCACTCGTCGCTTGCATCTTCATATCGTTCCGGCGTTTACTCAAGCAAGACTACGTCGATCCAAAAGACAAAGTTAAGGATGACCACAAGAACATTAGAGGTTCCCTGAATGTCTTCTATGGGCTGGCCCTTGCCCATAGCATGTCCTACTACATCTTGA] [+] EMBL CB672744 [CCAGCGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGGACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGACCAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTTAGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGTGGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATGCAAATAACAAGGGTTTTTGGCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCGGGTACCACTCTCGATGCTGCACCGTGACGAACTTACGCATGTTGGACTCGGAAGTTGGCGGAAGAACACAATAAAGAACGGAGAGGCCAGCAAAGGCTCGTCAAGCGTACGACAGAATCAACGCAATGTCCTAGTTCGCATGTTTTGCCCAAAGCGCCATGTCAAGATGACCATATTCCAGACAACCCTGACATGGATGGAGGCAGCTGCACTCGTCGCTTGCATCTTCATATCGTTCCGGCGTTTACTCAAGCAAGACTACGTCGATCCAAAAGACAAAGTTAAGGATGACCACAAGAACATTAGAGGTTCCCTGAATGTCTTCTATGGGCTGGCCCTTGCCCATAGCATGTCCTACTACATCTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2557#0 GTAGATCGATCGAGCCAGTCGCCCAGTGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGG 60 consensus_2557#1 ----------------------CCAGCGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGG 38 **** ********************************* consensus_2557#0 ACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGAC 120 consensus_2557#1 ACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGAC 98 ************************************************************ consensus_2557#0 CAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTT 180 consensus_2557#1 CAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTT 158 ************************************************************ consensus_2557#0 AGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGT 240 consensus_2557#1 AGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGT 218 ************************************************************ consensus_2557#0 GGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATG 300 consensus_2557#1 GGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATG 278 ************************************************************ consensus_2557#0 CAAATAACAAGGTGCGTATCAATACGACATCCCTATATATATAAAGTAGAAGTTAACTAA 360 consensus_2557#1 CAAATAACAAGG---GTTTTTG-GCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCG 334 ************ ** * ** ** * * * * ** * * consensus_2557#0 ACTGCTAATTAGTTTCCGTTTCCACCATCAATTGATACATAGGAAAAGTGCTGGCTTGTT 420 consensus_2557#1 GGTACCACTCTCGATGCTGCACCGTGACGAACTTACGCATGTTGGA--------CTCGGA 386 * * * * * * ** * ** * * *** * ** * consensus_2557#0 CTTGGGCACTCGATCACAAGAGAAAAATTGGGCGTCCCATGGCTACAGGCAGTGCCCCTC 480 consensus_2557#1 AGTTGGCGGAAGAACACAATA-AAGAACGGAGAGGCCAGCAAAGGCTCGTCAAGC--GTA 443 * *** ** ***** * ** ** * * * ** * * ** * consensus_2557#0 TTTCACTGTGAATAGCCTGCACACGCCAGCCCCTCTCTCTCCTATGCATGCATGCATGTG 540 consensus_2557#1 CGACAGAATCAACGCAATGTCCTAGTTCGCATGTTT-TGCCCAAAGCGC-CATGTCAAGA 501 ** * ** ** * * ** * * * ** * ** **** consensus_2557#0 TGTGTATCGCTCTAACGAGTTTCAAATATTTTCCCTTAAATTAGTTATTATCTCACATAT 600 consensus_2557#1 TGACCATATTCCAGACAACCCTGACATGGATGGAGGCAGCT--GCACTCGTCGCTTGCAT 559 ** ** * ** * * * ** * * * * * ** * ** consensus_2557#0 GATCCAATTACACCCATATTTATTAAATTACTAGAAAAAATATCCATGCGTTGCAACGGG 660 consensus_2557#1 CTTCATATCGTTCCGGCGTTTACTCAAGCAAGACTACGTCGATCCAAAAGACAAAGTTAA 619 ** ** ** **** * ** * * * ***** * * consensus_2557#0 AAAATACCTTAAATCACTTAGATCCGTACTTTCCTTTCTCAAAACTTCGGCAAACTCAAT 720 consensus_2557#1 GGATGACCACAAGAACATTAGAGGTTCCCTGAATGTCTTCTATGGGCTGGCCCTTGCCCA 679 * *** ** ***** ** * ** * *** * consensus_2557#0 TTGAAAATTTGAAAGCGAATTCAACTTTCCCTTTTGAATTACTTTCTTCTTTTACTAGTC 780 consensus_2557#1 TAGCATGTCCTACTACATCTTGA------------------------------------- 702 * * * * * * ** * consensus_2557#0 TCCCCTTGTTTAAAATTCGTTTAAATTCTCGTATATCAAAATTCACTAAAGATACAAAAG 840 consensus_2557#1 ------------------------------------------------------------ consensus_2557#0 TCCATATAATCACACGTTGTGACCGATGATGGATGAAAAACGGAAGCCCATTAAGATTTT 900 consensus_2557#1 ------------------------------------------------------------ consensus_2557#0 TCTACAAAGTAGGTGGTGAAGATATTCCAGGAGAAAAACAAGATAAAAAGAGGAGAAAAG 960 consensus_2557#1 ------------------------------------------------------------ consensus_2557#0 AGAGGAGATTGAAAGGAGAGGGAGATAATCAAGA 994 consensus_2557#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||