These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 979 fasta sequence [GGGAAGGTGCAGGTGCGGCGGATCGAGAACGAGGTGAGCCGGCAGGTGACCTTCTCCAAGCGGCGGCCGGGGCTGCTCAAGAAGGCCCACGAGATCGCCGTCCTCTGCGACGTCGACGTCGCCGCCATCGTCTTCTCCGCCAAGGGCAATCTCTTCCACTACGCCTCCTCCCACACCACTATGGAGCGAATCCTTGAGAAGTATGACAGACACGAGTTATTATCTGAAGGAAATAATGTGATTGAAGAGTTCCCTGAGCTGGAGGGAAGCATGAGATATGACCACATCAAGCTGAGGGGCAAGATTGAAGCTCTAAAAAAGAGCCAAAGGAATCTTATGGGGCAGGAACTTGACTCGCTGACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTCTGAATAACATAAGATCAAGAAAGGAAAAGTTGCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATATTGCTGATGCATTTGTTCCCAACCTCAACATCTGCTGCGGCGATTCCGGCGAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGGTGGATGCTCCAGTCATCATCGAACGGCAAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGCAGCCATTGCATGGTTGCTGAATAATGTCGTCCCAGATGGTTAGGCAAGCAACCTACCTAGAACTTTCAGTTAGTGAGCGGTAGTAGTATCTCCCCCTTCTTAATCCCTACTATACTCCGTAGATTAATTCTAAGCATCCTTTTGTTTCCATTATCTACGCTGCTGGTTTGATGAAATTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGCTCAGCCTTTGGTCATGTCTCTCACTGGAATCAATGTGTCATGTCTGT] [+] EMBL AY250075 [GGGAAGGTGCAGGTGCGGCGGATCGAGAACGAGGTGAGCCGGCAGGTGACCTTCTCCAAGCGGCGGCCGGGGCTGCTCAAGAAGGCCCACGAGATCGCCGTCCTCTGCGACGTCGACGTCGCCGCCATCGTCTTCTCCGCCAAGGGCAATCTCTTCCACTACGCCTCCTCCCACACCACTATGGAGCGAATCCTTGAGAAGTATGACAGACACGAGTTATTATCTGAAGGAAATAATGTGATTGAAGAGTTCCCTGAGCTGGAGGGAAGCATGAGATATGACCACATCAAGCTGAGGGGCAAGATTGAAGCTCTAAAAAAGAGCCAAAGGAATCTTATGGGGCAGGAACTTGACTCGCTGACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTCTGAATAACATAAGATCAAGAAAGGAAAAGTTGCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATATTGCTGATGCATTTGTTCCCAACCTCAACATCTGCTGCGGCGATTCCGGCGAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGGTGGATGCTCCAGTCATCATCGAACGGCAAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGCAGCCATTGCATGGTTGCTGAATAATGTCGTCCCAGATGGTTAGGCAAGCAACCTACCTAGAACTTTCAGTTAGTGAGCGGTAGTAGTATCTCCCCCTTCTTAATCCCTACTATACTCCGTAGATTAATTCTAAGCATCCTTTTGTTTCCATTATCTACGCTGCTGGTTTGATGAAATTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGCTCAGCCTTTGGTCATGTCTCTCACTGGAATCAATGTGTCATGTCTGT] consensusID : consensus_2569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [GACGAGACAAGGGGGGGGCAGGAACTTGACTCACTGACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTTCTGAATAACATAAGATCAAGAAAGACCAATCTCTTGCTCAAGTCGATCGGCGAGCTCCGACAGAAGGAAAAGTTGCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATACTGCTGATGCATTTGTTCCCAACCTCAACATCTGGCCATCAACTAAAACCGCAGTTGCGGCGATTCCGGCGAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGGTGGATGCTCCAGTCATCATCAAACTTCTAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGCAGCCATTGCATATGGTTGCTGAATAATGTCGTCCCAGATGGCTAGGCAAGCAACCTAGCTAGAACTTTCAGTTAGTGAGCAGTAGTACAGTGGTAGTACCGTGGTAGTATCTCCCCCTTCTTAATCCCTAAGTAGATTGCAAGCATTTCCTATGCTGCTAGTTTTGATGAATTTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGATCAGCCATTTGGTCATGTCAAAAAAAAAA] [-] EMBL CA763006 [GACGAGACAAGGGGGGGGCAGGAACTTGACTCACTGACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTTCTGAATAACATAAGATCAAGAAAGACCAATCTCTTGCTCAAGTCGATCGGCGAGCTCCGACAGAAGGAAAAGTTGCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATACTGCTGATGCATTTGTTCCCAACCTCAACATCTGGCCATCAACTAAAACCGCAGTTGCGGCGATTCCGGCGAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGGTGGATGCTCCAGTCATCATCAAACTTCTAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGCAGCCATTGCATATGGTTGCTGAATAATGTCGTCCCAGATGGCTAGGCAAGCAACCTAGCTAGAACTTTCAGTTAGTGAGCAGTAGTACAGTGGTAGTACCGTGGTAGTATCTCCCCCTTCTTAATCCCTAAGTAGATTGCAAGCATTTCCTATGCTGCTAGTTTTGATGAATTTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGATCAGCCATTTGGTCATGTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2569#0 GGGAAGGTGCAGGTGCGGCGGATCGAGAACGAGGTGAGCCGGCAGGTGACCTTCTCCAAG 60 consensus_2569#1 ------------------------------------------------------------ consensus_2569#0 CGGCGGCCGGGGCTGCTCAAGAAGGCCCACGAGATCGCCGTCCTCTGCGACGTCGACGTC 120 consensus_2569#1 ------------------------------------------------------------ consensus_2569#0 GCCGCCATCGTCTTCTCCGCCAAGGGCAATCTCTTCCACTACGCCTCCTCCCACACCACT 180 consensus_2569#1 ------------------------------------------------------------ consensus_2569#0 ATGGAGCGAATCCTTGAGAAGTATGACAGACACGAGTTATTATCTGAAGGAAATAATGTG 240 consensus_2569#1 ------------------------------------------------------------ consensus_2569#0 ATTGAAGAGTTCCCTGAGCTGGAGGGAAGCATGAGATATGACCACATCAAGCTGAGGGGC 300 consensus_2569#1 ------------------------------------------------------------ consensus_2569#0 AAGATTGAAGCTCTAAAAAAGAGCCAAAGGAATCTTATGGGGCAGGAACTTGACTCGCTG 360 consensus_2569#1 -----------------GACGAGACAAGGGG-------GGGGCAGGAACTTGACTCACTG 36 * *** *** ** ****************** *** consensus_2569#0 ACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCT-CTGAATAACATAAG 419 consensus_2569#1 ACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTTCTGAATAACATAAG 96 ********************************************* ************** consensus_2569#0 ATCAAGAAAG------------------------------------------GAAAAGTT 437 consensus_2569#1 ATCAAGAAAGACCAATCTCTTGCTCAAGTCGATCGGCGAGCTCCGACAGAAGGAAAAGTT 156 ********** ******** consensus_2569#0 GCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATAC 497 consensus_2569#1 GCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATAC 216 ************************************************************ consensus_2569#0 AAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATATTGCTGATGC 557 consensus_2569#1 AAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATACTGCTGATGC 276 ************************************************** ********* consensus_2569#0 ATTTGTTCCCAACCTCAACATCTG--------------------CTGCGGCGATTCCGGC 597 consensus_2569#1 ATTTGTTCCCAACCTCAACATCTGGCCATCAACTAAAACCGCAGTTGCGGCGATTCCGGC 336 ************************ *************** consensus_2569#0 GAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGG 657 consensus_2569#1 GAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGG 396 ************************************************************ consensus_2569#0 TGGATGCTCCAGTCATCATCGAACGGCAAGAGCTAGAAGATGTTCAGATGAAATGGTCCC 717 consensus_2569#1 TGGATGCTCCAGTCATCATCAAACTTCTAGAGCTAGAAGATGTTCAGATGAAATGGTCCC 456 ******************** *** * ******************************** consensus_2569#0 TGCAGCCATTGCAT--GGTTGCTGAATAATGTCGTCCCAGATGGTTAGGCAAGCAACCTA 775 consensus_2569#1 TGCAGCCATTGCATATGGTTGCTGAATAATGTCGTCCCAGATGGCTAGGCAAGCAACCTA 516 ************** **************************** *************** consensus_2569#0 CCTAGAACTTTCAGTTAGTGAGCGGTAGTA--GTATCTCCCCCTTCTTAATCCCTACTAT 833 consensus_2569#1 GCTAGAACTTTCAGTTAGTGAGCAGTAGTACAGTGGTAGTACCGTGGTAGTATCT----- 571 ********************** ****** ** ** * ** * ** consensus_2569#0 ACTCCGTAGATTAATTCTAAGCATCCTTTTGTTTCCATTATCTACGCTGCTGGTTT-GAT 892 consensus_2569#1 -CCCCCTTCTTAATCCCTAAGTA---GATTGCAAGCATTTCCTATGCTGCTAGTTTTGAT 627 * ** * * * ***** * *** **** *** ****** **** *** consensus_2569#0 GAAATTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGCTCAGCC-TTTGGTCATGTCT 951 consensus_2569#1 GAATTTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGATCAGCCATTTGGTCATGTCA 687 *** *********************************** ****** ************ consensus_2569#0 CTCACTGGAATCAATGTGTCATGTCTGT 979 consensus_2569#1 AAAAAAAAA------------------- 696 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||