cluster # 2569

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Oryza sativa
cluster # 2569 cluster # 2569 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2569#0 length = 979 sequences # 1

consensus_2569#1 length = 696 sequences # 1

consensusID : consensus_2569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 979
fasta sequence

                              [GGGAAGGTGCAGGTGCGGCGGATCGAGAACGAGGTGAGCCGGCAGGTGACCTTCTCCAAGCGGCGGCCGGGGCTGCTCAAGAAGGCCCACGAGATCGCCGTCCTCTGCGACGTCGACGTCGCCGCCATCGTCTTCTCCGCCAAGGGCAATCTCTTCCACTACGCCTCCTCCCACACCACTATGGAGCGAATCCTTGAGAAGTATGACAGACACGAGTTATTATCTGAAGGAAATAATGTGATTGAAGAGTTCCCTGAGCTGGAGGGAAGCATGAGATATGACCACATCAAGCTGAGGGGCAAGATTGAAGCTCTAAAAAAGAGCCAAAGGAATCTTATGGGGCAGGAACTTGACTCGCTGACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTCTGAATAACATAAGATCAAGAAAGGAAAAGTTGCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATATTGCTGATGCATTTGTTCCCAACCTCAACATCTGCTGCGGCGATTCCGGCGAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGGTGGATGCTCCAGTCATCATCGAACGGCAAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGCAGCCATTGCATGGTTGCTGAATAATGTCGTCCCAGATGGTTAGGCAAGCAACCTACCTAGAACTTTCAGTTAGTGAGCGGTAGTAGTATCTCCCCCTTCTTAATCCCTACTATACTCCGTAGATTAATTCTAAGCATCCTTTTGTTTCCATTATCTACGCTGCTGGTTTGATGAAATTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGCTCAGCCTTTGGTCATGTCTCTCACTGGAATCAATGTGTCATGTCTGT]

[+] EMBL AY250075             [GGGAAGGTGCAGGTGCGGCGGATCGAGAACGAGGTGAGCCGGCAGGTGACCTTCTCCAAGCGGCGGCCGGGGCTGCTCAAGAAGGCCCACGAGATCGCCGTCCTCTGCGACGTCGACGTCGCCGCCATCGTCTTCTCCGCCAAGGGCAATCTCTTCCACTACGCCTCCTCCCACACCACTATGGAGCGAATCCTTGAGAAGTATGACAGACACGAGTTATTATCTGAAGGAAATAATGTGATTGAAGAGTTCCCTGAGCTGGAGGGAAGCATGAGATATGACCACATCAAGCTGAGGGGCAAGATTGAAGCTCTAAAAAAGAGCCAAAGGAATCTTATGGGGCAGGAACTTGACTCGCTGACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTCTGAATAACATAAGATCAAGAAAGGAAAAGTTGCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATATTGCTGATGCATTTGTTCCCAACCTCAACATCTGCTGCGGCGATTCCGGCGAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGGTGGATGCTCCAGTCATCATCGAACGGCAAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGCAGCCATTGCATGGTTGCTGAATAATGTCGTCCCAGATGGTTAGGCAAGCAACCTACCTAGAACTTTCAGTTAGTGAGCGGTAGTAGTATCTCCCCCTTCTTAATCCCTACTATACTCCGTAGATTAATTCTAAGCATCCTTTTGTTTCCATTATCTACGCTGCTGGTTTGATGAAATTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGCTCAGCCTTTGGTCATGTCTCTCACTGGAATCAATGTGTCATGTCTGT]




>consensus_2569#0
GGGAAGGTGCAGGTGCGGCGGATCGAGAACGAGGTGAGCCGGCAGGTGACCTTCTCCAAG
CGGCGGCCGGGGCTGCTCAAGAAGGCCCACGAGATCGCCGTCCTCTGCGACGTCGACGTC
GCCGCCATCGTCTTCTCCGCCAAGGGCAATCTCTTCCACTACGCCTCCTCCCACACCACT
ATGGAGCGAATCCTTGAGAAGTATGACAGACACGAGTTATTATCTGAAGGAAATAATGTG
ATTGAAGAGTTCCCTGAGCTGGAGGGAAGCATGAGATATGACCACATCAAGCTGAGGGGC
AAGATTGAAGCTCTAAAAAAGAGCCAAAGGAATCTTATGGGGCAGGAACTTGACTCGCTG
ACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTCTGAATAACATAAGA
TCAAGAAAGGAAAAGTTGCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAA
CTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCC
TGCAATATTGCTGATGCATTTGTTCCCAACCTCAACATCTGCTGCGGCGATTCCGGCGAG
CCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGGTGG
ATGCTCCAGTCATCATCGAACGGCAAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGC
AGCCATTGCATGGTTGCTGAATAATGTCGTCCCAGATGGTTAGGCAAGCAACCTACCTAG
AACTTTCAGTTAGTGAGCGGTAGTAGTATCTCCCCCTTCTTAATCCCTACTATACTCCGT
AGATTAATTCTAAGCATCCTTTTGTTTCCATTATCTACGCTGCTGGTTTGATGAAATTCC
TGTGTTGTATTCAGCTGCATTGGGATCATTGCTCAGCCTTTGGTCATGTCTCTCACTGGA
ATCAATGTGTCATGTCTGT

consensusID : consensus_2569#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [GACGAGACAAGGGGGGGGCAGGAACTTGACTCACTGACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTTCTGAATAACATAAGATCAAGAAAGACCAATCTCTTGCTCAAGTCGATCGGCGAGCTCCGACAGAAGGAAAAGTTGCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATACTGCTGATGCATTTGTTCCCAACCTCAACATCTGGCCATCAACTAAAACCGCAGTTGCGGCGATTCCGGCGAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGGTGGATGCTCCAGTCATCATCAAACTTCTAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGCAGCCATTGCATATGGTTGCTGAATAATGTCGTCCCAGATGGCTAGGCAAGCAACCTAGCTAGAACTTTCAGTTAGTGAGCAGTAGTACAGTGGTAGTACCGTGGTAGTATCTCCCCCTTCTTAATCCCTAAGTAGATTGCAAGCATTTCCTATGCTGCTAGTTTTGATGAATTTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGATCAGCCATTTGGTCATGTCAAAAAAAAAA]

[-] EMBL CA763006             [GACGAGACAAGGGGGGGGCAGGAACTTGACTCACTGACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTTCTGAATAACATAAGATCAAGAAAGACCAATCTCTTGCTCAAGTCGATCGGCGAGCTCCGACAGAAGGAAAAGTTGCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATACTGCTGATGCATTTGTTCCCAACCTCAACATCTGGCCATCAACTAAAACCGCAGTTGCGGCGATTCCGGCGAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGGTGGATGCTCCAGTCATCATCAAACTTCTAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGCAGCCATTGCATATGGTTGCTGAATAATGTCGTCCCAGATGGCTAGGCAAGCAACCTAGCTAGAACTTTCAGTTAGTGAGCAGTAGTACAGTGGTAGTACCGTGGTAGTATCTCCCCCTTCTTAATCCCTAAGTAGATTGCAAGCATTTCCTATGCTGCTAGTTTTGATGAATTTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGATCAGCCATTTGGTCATGTCAAAAAAAAAA]




>consensus_2569#1
GACGAGACAAGGGGGGGGCAGGAACTTGACTCACTGACACTGCAAGATATCCAGCAGCTT
GAGGACCAGATAGACACTTCTTCTGAATAACATAAGATCAAGAAAGACCAATCTCTTGCT
CAAGTCGATCGGCGAGCTCCGACAGAAGGAAAAGTTGCTGATGGAGAAAAACACTATTCT
GGAGAAGAAAATTACTGAACTGGAGACACTGCATACAAGCATCAGGGCGTCACCCACTGA
AGCTGCTGCTCCTCCTGCCTGCAATACTGCTGATGCATTTGTTCCCAACCTCAACATCTG
GCCATCAACTAAAACCGCAGTTGCGGCGATTCCGGCGAGCCGGAAACCGTGACGGCGCCA
CTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGGTGGATGCTCCAGTCATCATCAAAC
TTCTAGAGCTAGAAGATGTTCAGATGAAATGGTCCCTGCAGCCATTGCATATGGTTGCTG
AATAATGTCGTCCCAGATGGCTAGGCAAGCAACCTAGCTAGAACTTTCAGTTAGTGAGCA
GTAGTACAGTGGTAGTACCGTGGTAGTATCTCCCCCTTCTTAATCCCTAAGTAGATTGCA
AGCATTTCCTATGCTGCTAGTTTTGATGAATTTCCTGTGTTGTATTCAGCTGCATTGGGA
TCATTGATCAGCCATTTGGTCATGTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2569#0      GGGAAGGTGCAGGTGCGGCGGATCGAGAACGAGGTGAGCCGGCAGGTGACCTTCTCCAAG 60
consensus_2569#1      ------------------------------------------------------------
                                                                                  

consensus_2569#0      CGGCGGCCGGGGCTGCTCAAGAAGGCCCACGAGATCGCCGTCCTCTGCGACGTCGACGTC 120
consensus_2569#1      ------------------------------------------------------------
                                                                                  

consensus_2569#0      GCCGCCATCGTCTTCTCCGCCAAGGGCAATCTCTTCCACTACGCCTCCTCCCACACCACT 180
consensus_2569#1      ------------------------------------------------------------
                                                                                  

consensus_2569#0      ATGGAGCGAATCCTTGAGAAGTATGACAGACACGAGTTATTATCTGAAGGAAATAATGTG 240
consensus_2569#1      ------------------------------------------------------------
                                                                                  

consensus_2569#0      ATTGAAGAGTTCCCTGAGCTGGAGGGAAGCATGAGATATGACCACATCAAGCTGAGGGGC 300
consensus_2569#1      ------------------------------------------------------------
                                                                                  

consensus_2569#0      AAGATTGAAGCTCTAAAAAAGAGCCAAAGGAATCTTATGGGGCAGGAACTTGACTCGCTG 360
consensus_2569#1      -----------------GACGAGACAAGGGG-------GGGGCAGGAACTTGACTCACTG 36
                                        * *** *** **        ****************** ***

consensus_2569#0      ACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCT-CTGAATAACATAAG 419
consensus_2569#1      ACACTGCAAGATATCCAGCAGCTTGAGGACCAGATAGACACTTCTTCTGAATAACATAAG 96
                      ********************************************* **************

consensus_2569#0      ATCAAGAAAG------------------------------------------GAAAAGTT 437
consensus_2569#1      ATCAAGAAAGACCAATCTCTTGCTCAAGTCGATCGGCGAGCTCCGACAGAAGGAAAAGTT 156
                      **********                                          ********

consensus_2569#0      GCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATAC 497
consensus_2569#1      GCTGATGGAGAAAAACACTATTCTGGAGAAGAAAATTACTGAACTGGAGACACTGCATAC 216
                      ************************************************************

consensus_2569#0      AAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATATTGCTGATGC 557
consensus_2569#1      AAGCATCAGGGCGTCACCCACTGAAGCTGCTGCTCCTCCTGCCTGCAATACTGCTGATGC 276
                      ************************************************** *********

consensus_2569#0      ATTTGTTCCCAACCTCAACATCTG--------------------CTGCGGCGATTCCGGC 597
consensus_2569#1      ATTTGTTCCCAACCTCAACATCTGGCCATCAACTAAAACCGCAGTTGCGGCGATTCCGGC 336
                      ************************                     ***************

consensus_2569#0      GAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGG 657
consensus_2569#1      GAGCCGGAAACCGTGACGGCGCCACTTGGCTGGACCAGCAGCAACAATGGCTTGCCATGG 396
                      ************************************************************

consensus_2569#0      TGGATGCTCCAGTCATCATCGAACGGCAAGAGCTAGAAGATGTTCAGATGAAATGGTCCC 717
consensus_2569#1      TGGATGCTCCAGTCATCATCAAACTTCTAGAGCTAGAAGATGTTCAGATGAAATGGTCCC 456
                      ******************** ***  * ********************************

consensus_2569#0      TGCAGCCATTGCAT--GGTTGCTGAATAATGTCGTCCCAGATGGTTAGGCAAGCAACCTA 775
consensus_2569#1      TGCAGCCATTGCATATGGTTGCTGAATAATGTCGTCCCAGATGGCTAGGCAAGCAACCTA 516
                      **************  **************************** ***************

consensus_2569#0      CCTAGAACTTTCAGTTAGTGAGCGGTAGTA--GTATCTCCCCCTTCTTAATCCCTACTAT 833
consensus_2569#1      GCTAGAACTTTCAGTTAGTGAGCAGTAGTACAGTGGTAGTACCGTGGTAGTATCT----- 571
                       ********************** ******  **       ** *  ** *  **     

consensus_2569#0      ACTCCGTAGATTAATTCTAAGCATCCTTTTGTTTCCATTATCTACGCTGCTGGTTT-GAT 892
consensus_2569#1      -CCCCCTTCTTAATCCCTAAGTA---GATTGCAAGCATTTCCTATGCTGCTAGTTTTGAT 627
                       * ** *   * *   ***** *     ***    ****  *** ****** **** ***

consensus_2569#0      GAAATTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGCTCAGCC-TTTGGTCATGTCT 951
consensus_2569#1      GAATTTCCTGTGTTGTATTCAGCTGCATTGGGATCATTGATCAGCCATTTGGTCATGTCA 687
                      *** *********************************** ****** ************ 

consensus_2569#0      CTCACTGGAATCAATGTGTCATGTCTGT 979
consensus_2569#1      AAAAAAAAA------------------- 696
                         *    *