|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[TTTTTTTTTTGGCAACAGATCAATGAATAAACATTGCAATTTGCATAGTGTTCATCAAGTATATATCTACGTGGACTGGAAATAAATGATGTTCTAACCTAAATTAACTAGCTAAGCTCGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTATTGTGGTAAGCTACTGTTATACACCTTTTTATCTAAAGCTTAATAAAGACAAACTCCTCAACTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAATGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCACATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGACGGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGAGATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGGCACCGGCAAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTATAGGGACCTCCGGTGATCCATCAAGGAGGATTCTCCCTTCGCTGATCCGAAGGCCTCTTTGCTTGGCCACATAGTCNGCATTGACAATGTTAACAAATGCACTTGACATGGCCTCGAT]
[+] EMBL CA763041 [TTTTTTTTTTGGCAACAGATCAATGAATAAACATTGCAATTTGCATAGTGTTCATCAAGTATATATCTACGTGGACTGGAAATAAATGATGTTCTAACCTAAATTAACTAGCTAAGCTCGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTATTGTGGTAAGCTACTGTTATACACCTTTTTATCTAAAGCTTAATAAAGACAAACTCCTCAACTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAATGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCACATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGACGGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGAGATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGGCACCGGCAAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTATAGGGACCTCCGGTGATCCATCAAGGAGGATTCTCCCTTCGCTGATCCGAAGGCCTCTTTGCTTGGCCACATAGTCNGCATTGACAATGTTAACAAATGCACTTGACATGGCCTCGAT]
consensusID : consensus_2579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[TTTTTTTTGGAACAAACCAGCAGGGGCAACAGATCAATGAATAAACATTGCAATTTGCATAGTGTTCATCAAGTATATATCTACGTGGACTGAAAATAAATGATGTTCTAACCTAAATTAACTAGCTAAGCTTGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTATTGTGGTAAGCTACTGTTATACACCTTATTATCTAAAGCTTAATAAAGACAAACTCCTCAACTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAATGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCACATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGACGGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGAGATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGGCACCGGCGAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTA]
[+] EMBL CF308917 [TTTTTTTTGGAACAAACCAGCAGGGGCAACAGATCAATGAATAAACATTGCAATTTGCATAGTGTTCATCAAGTATATATCTACGTGGACTGAAAATAAATGATGTTCTAACCTAAATTAACTAGCTAAGCTTGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTATTGTGGTAAGCTACTGTTATACACCTTATTATCTAAAGCTTAATAAAGACAAACTCCTCAACTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAATGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCACATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGACGGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGAGATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGGCACCGGCGAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2579#0 TTTTTTTTTT--------------GGCAACAGATCAATGAATAAACATTGCAATTTGCAT 46
consensus_2579#1 TTTTTTTTGGAACAAACCAGCAGGGGCAACAGATCAATGAATAAACATTGCAATTTGCAT 60
******** ************************************
consensus_2579#0 AGTGTTCATCAAGTATATATCTACGTGGACTGGAAATAAATGATGTTCTAACCTAAATTA 106
consensus_2579#1 AGTGTTCATCAAGTATATATCTACGTGGACTGAAAATAAATGATGTTCTAACCTAAATTA 120
******************************** ***************************
consensus_2579#0 ACTAGCTAAGCTCGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTAT 166
consensus_2579#1 ACTAGCTAAGCTTGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTAT 180
************ ***********************************************
consensus_2579#0 TGTGGTAAGCTACTGTTATACACCTTTTTATCTAAAGCTTAATAAAGACAAACTCCTCAA 226
consensus_2579#1 TGTGGTAAGCTACTGTTATACACCTTATTATCTAAAGCTTAATAAAGACAAACTCCTCAA 240
************************** *********************************
consensus_2579#0 CTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAA 286
consensus_2579#1 CTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAA 300
************************************************************
consensus_2579#0 TGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCA 346
consensus_2579#1 TGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCA 360
************************************************************
consensus_2579#0 CATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGAC 406
consensus_2579#1 CATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGAC 420
************************************************************
consensus_2579#0 GGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGA 466
consensus_2579#1 GGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGA 480
************************************************************
consensus_2579#0 GATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGG 526
consensus_2579#1 GATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGG 540
************************************************************
consensus_2579#0 CACCGGCAAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTATAGGGACCT 586
consensus_2579#1 CACCGGCGAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTA--------- 591
******* *******************************************
consensus_2579#0 CCGGTGATCCATCAAGGAGGATTCTCCCTTCGCTGATCCGAAGGCCTCTTTGCTTGGCCA 646
consensus_2579#1 ------------------------------------------------------------
consensus_2579#0 CATAGTCNGCATTGACAATGTTAACAAATGCACTTGACATGGCCTCGAT 695
consensus_2579#1 -------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||