These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence [TTCTTGCGAGGTGCTTCTTGTTCTTGAGGTTGGCCATGGCGGATCACCAGCGGATGAGGATTCACCCCGTCGACCTGGAGGCCGGTGGCCGGCACCGGCCCACGGCGCCGCTGGTGCCCGGCGGCTCGTTCCGCTCCGACAAGGGCGACCCGGCGGCGCTCTACCTGGTGTTCGACCCCAAGGCGCCGCGCTACTCGGTGACGGCGACGAACCCGAACGCGCGCATCGGCATCTACTACGAGGCCGGGTCCAGCCTCAGCGTGTGGTACGACGCGCACCGCCTGGCGCGCGGCGCGCTCCCGGCGTTCTACCAGGGCCACCGCAACACGACGGTGCTGGCCGTCGTCATGGCCGGGCAGGCGCAGCTCGGCGGCGCGGTGATGTCGGCGCTGCAGGACGCGCAGCGCACGGGCGCCGTGCCGCTCGTGTTCCGCGCCGACGTCCCCGTGCGCGTCGAGCTCGGCAGCCTCAGGCTGTGGAAGGTCACGTCGCGGGTGCGCTGCGACCTCGTCGTCGACAGCCTCGGCGTCAACAACCCCGTCAACATCAAGGCCAGCAACTGCAAGTTCAGCTTGAAGCTGTGACGACGCCATTGATGCTTCGATTCTTTGATTTAGTTCAGTTCTTGCCTAGTTCTTGCCATCTTGGTGATGGATTCTTTCAGGATCGAGTGCTTTGTACTATTTGCATTGGTGCACTCCTCCTGCAGCTTGTGTACATCCTGTGTAGTTGAGAGAGATAATAATATATGCATGATTAGTATATTT] [+] EMBL AK072753 [TTCTTGCGAGGTGCTTCTTGTTCTTGAGGTTGGCCATGGCGGATCACCAGCGGATGAGGATTCACCCCGTCGACCTGGAGGCCGGTGGCCGGCACCGGCCCACGGCGCCGCTGGTGCCCGGCGGCTCGTTCCGCTCCGACAAGGGCGACCCGGCGGCGCTCTACCTGGTGTTCGACCCCAAGGCGCCGCGCTACTCGGTGACGGCGACGAACCCGAACGCGCGCATCGGCATCTACTACGAGGCCGGGTCCAGCCTCAGCGTGTGGTACGACGCGCACCGCCTGGCGCGCGGCGCGCTCCCGGCGTTCTACCAGGGCCACCGCAACACGACGGTGCTGGCCGTCGTCATGGCCGGGCAGGCGCAGCTCGGCGGCGCGGTGATGTCGGCGCTGCAGGACGCGCAGCGCACGGGCGCCGTGCCGCTCGTGTTCCGCGCCGACGTCCCCGTGCGCGTCGAGCTCGGCAGCCTCAGGCTGTGGAAGGTCACGTCGCGGGTGCGCTGCGACCTCGTCGTCGACAGCCTCGGCGTCAACAACCCCGTCAACATCAAGGCCAGCAACTGCAAGTTCAGCTTGAAGCTGTGACGACGCCATTGATGCTTCGATTCTTTGATTTAGTTCAGTTCTTGCCTAGTTCTTGCCATCTTGGTGATGGATTCTTTCAGGATCGAGTGCTTTGTACTATTTGCATTGGTGCACTCCTCCTGCAGCTTGTGTACATCCTGTGTAGTTGAGAGAGATAATAATATATGCATGATTAGTATATTT] consensusID : consensus_2589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [CCCGGNTCCACCCTTCAGCGTGTGNTACAACGCGGCACCTGCTTGGCGCACCGGCGCAGCTCCNCGGCGTTTCTACCAGGGCCACCGCAACACGACGGTGCTGCCACGTCGTCATGCCCGGCAGGCACAGCTTCGCGGCCCGGTGATGTCGGCCCTGCAGGACGCCCAGCGCACAGGGCCCCAGTCCCGCTCTGTGTTTCCGCCCCGACAGTCCCCCGTTGCGCGTCGAGCTTCGCCAACCCTCAAGCCTTGTGGAAGGTCANCAGTCCCGGTTGCGCTTGCGACCTTCGTTCGGTTCGGACAAGCCNTCGGCGGTCAANCAAACCCCCCGTCCAACAATCCAAGGCCAAGCAACTGGCCAAAGTTCAGCCTGGAAGCTGTGGACCGAACGCCATTTGGATGGCTTTCGATTCCTTTGGATCCCCCCAAGCTTCTGGCACTAAGTTCTTGCCAATCTTGGTGAATGGATTCTTTCAGGATCGAGTGGCTTTGTACTATTGCATTGGTNCACTCCTCCTGCAGCTTGTGTACATCCTGTGTATTGAGATCCNAACAATATATGCATGATTAGTATAAAAAAAAAA] [+] EMBL BI805400 [CCCGGNTCCACCCTTCAGCGTGTGNTACAACGCGGCACCTGCTTGGCGCACCGGCGCAGCTCCNCGGCGTTTCTACCAGGGCCACCGCAACACGACGGTGCTGCCACGTCGTCATGCCCGGCAGGCACAGCTTCGCGGCCCGGTGATGTCGGCCCTGCAGGACGCCCAGCGCACAGGGCCCCAGTCCCGCTCTGTGTTTCCGCCCCGACAGTCCCCCGTTGCGCGTCGAGCTTCGCCAACCCTCAAGCCTTGTGGAAGGTCANCAGTCCCGGTTGCGCTTGCGACCTTCGTTCGGTTCGGACAAGCCNTCGGCGGTCAANCAAACCCCCCGTCCAACAATCCAAGGCCAAGCAACTGGCCAAAGTTCAGCCTGGAAGCTGTGGACCGAACGCCATTTGGATGGCTTTCGATTCCTTTGGATCCCCCCAAGCTTCTGGCACTAAGTTCTTGCCAATCTTGGTGAATGGATTCTTTCAGGATCGAGTGGCTTTGTACTATTGCATTGGTNCACTCCTCCTGCAGCTTGTGTACATCCTGTGTATTGAGATCCNAACAATATATGCATGATTAGTATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2589#0 TTCTTGCGAGGTGCTTCTTGTTCTTGAGGTTGGCCATGGCGGATCACCAGCGGATGAGGA 60 consensus_2589#1 ------------------------------------------------------------ consensus_2589#0 TTCACCCCGTCGACCTGGAGGCCGGTGGCCGGCACCGGCCCACGGCGCCGCTGGTGCCCG 120 consensus_2589#1 ------------------------------------------------------------ consensus_2589#0 GCGGCTCGTTCCGCTCCGACAAGGGCGACCCGGCGGCGCTCTACCTGGTGTTCGACCCCA 180 consensus_2589#1 ------------------------------------------------------------ consensus_2589#0 AGGCGCCGCGCTACTCGGTGACGGCGACGAACCCGAACGCGCGCATCGGCATCTACTACG 240 consensus_2589#1 ------------------------------------------------------------ consensus_2589#0 AGGCCGGGTCCAGCCT-CAGCGTGTGGTACGACGCG-CACC-GCCTGGCGCGC-GGCGCG 296 consensus_2589#1 --CCCGGNTCCACCCTTCAGCGTGTGNTACAACGCGGCACCTGCTTGGCGCACCGGCGCA 58 **** **** *** ********* *** ***** **** ** ****** * ***** consensus_2589#0 --CTCCCGGCGTT-CTACCAGGGCCACCGCAACACGACGGTGCTGGC-CGTCGTCATGGC 352 consensus_2589#1 GCTCCNCGGCGTTTCTACCAGGGCCACCGCAACACGACGGTGCTGCCACGTCGTCATGCC 118 * ******* ******************************* * ********** * consensus_2589#0 CGGGCAGGCGCAGCTCGGCGGCGCGGTGATGTCGGCGCTGCAGGACGCGCAGCGCACGGG 412 consensus_2589#1 CGG-CAGGCACAGCTTCGCGGCCCGGTGATGTCGGCCCTGCAGGACGCCCAGCGCACAGG 177 *** ***** ***** ***** ************* *********** ******** ** consensus_2589#0 CGCC--GTGCCGCTC-GTGTT-CCGCGCCGAC-GTCCCCG--TGCGCGTCGAGCTCGGC- 464 consensus_2589#1 GCCCCAGTCCCGCTCTGTGTTTCCGCCCCGACAGTCCCCCGTTGCGCGTCGAGCTTCGCC 237 ** ** ****** ***** **** ***** ****** ************* ** consensus_2589#0 -AGCCTCAGGC--TGTGGAAGGTCAC--GTCGCGGGTGCGCT-GCGACCT-----CGTCG 513 consensus_2589#1 AACCCTCAAGCCTTGTGGAAGGTCANCAGTCCCGGTTGCGCTTGCGACCTTCGTTCGGTT 297 * ***** ** ************ *** *** ****** ******* ** consensus_2589#0 TCGACAG--CCTCGGCG-TCAACAA----CCCCGTC-AACA--TCAAGGCCA-GCAACTG 562 consensus_2589#1 CGGACAAGCCNTCGGCGGTCAANCAAACCCCCCGTCCAACAATCCAAGGCCAAGCAACTG 357 **** * ****** **** * ******* **** ******** ******* consensus_2589#0 C---AAGTTCAGCTTG-AAGCTGTGAC---GACGCCATT--GATG--CTTCGATTCTTT- 610 consensus_2589#1 GCCAAAGTTCAGCCTGGAAGCTGTGGACCGAACGCCATTTGGATGGCTTTCGATTCCTTT 417 ********* ** ******** ******** **** ******** ** consensus_2589#0 -GATTTAGTTCAGTTCTTG---CCTAGTTCTTGCCA-TCTTGGTGA-TGGATTCTTTCAG 664 consensus_2589#1 GGATCCCCCCAAGCTTCTGGCACTAAGTTCTTGCCAATCTTGGTGAATGGATTCTTTCAG 477 *** ** * ** * *********** ********* ************* consensus_2589#0 GATCGAGTG-CTTTGTACTATTTGCATTGGTGCACTCCTCCTGCAGCTTGTGTACATCCT 723 consensus_2589#1 GATCGAGTGGCTTTGTACTATT-GCATTGGTNCACTCCTCCTGCAGCTTGTGTACATCCT 536 ********* ************ ******** **************************** consensus_2589#0 GTGTAGTTGAGAGAGATAATAATATATGCATGATTAGTATATTT------ 767 consensus_2589#1 GTGTA-TTGAGATCCN-AACAATATATGCATGATTAGTATAAAAAAAAAA 584 ***** ****** ** ********************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||