cluster # 2590

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Oryza sativa
cluster # 2590 cluster # 2590 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2590#0 length = 690 sequences # 1

consensus_2590#1 length = 637 sequences # 1

consensusID : consensus_2590#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [TTTTTTTTTTTTTAGACGAGCTCATGCCTTCTCGATTAGAAGCTCTCAAAAAAAATAATTGTTGCTCATGCGACCATGTATGAGGATATCTGTTAATTACTGTCATATAGCCCCTGGATAAAAGCACAAGTCTTCCAACACGGATCATATAAAATTTAGTGATTACAGTGACAATGCTAGTGAGAAGCTCTTCTGCCAGCACATCTAATTACTTTAATTTACTTGATCTTAGGTGAATATCTTGCTTGTAGATGCTGCAACAGAAAACTAATCAGCTCGGCATGAGGCGCCATCCTTGAAGCATTTTGAAACATCGAAAGGGTCCTTTGACATGTTGAATGCCCCCTGGAAGCACCATGCTGTAGCATCTATAGGAAATGGACTCTCATAGACNATCAGCTTACAGTCTTCATTGGCCAATCTTGTAGAAGCCATGAAAGTGCTCAGACTGGCACGCANCCNATCAGCTGAAGATGAACAGGTATGTGTCAGCACAACGACNACCTTCTCCAGCACCTGCCCACGCTCGGCAATGAACTTGAGAAAATCAAGCTCGCTTCTTTGCATTCTGAATTCACGCATGATAACGTTCTTGATGTGCTTCTGGAGGCACTCATTGGGGGAGGTTCTCCTGCACAACTTGGGATTGAGCTTGCCGGNNGGTGTTGCCACTAAAAGTGGTCTCTGACT]

[+] EMBL CA763082             [TTTTTTTTTTTTTAGACGAGCTCATGCCTTCTCGATTAGAAGCTCTCAAAAAAAATAATTGTTGCTCATGCGACCATGTATGAGGATATCTGTTAATTACTGTCATATAGCCCCTGGATAAAAGCACAAGTCTTCCAACACGGATCATATAAAATTTAGTGATTACAGTGACAATGCTAGTGAGAAGCTCTTCTGCCAGCACATCTAATTACTTTAATTTACTTGATCTTAGGTGAATATCTTGCTTGTAGATGCTGCAACAGAAAACTAATCAGCTCGGCATGAGGCGCCATCCTTGAAGCATTTTGAAACATCGAAAGGGTCCTTTGACATGTTGAATGCCCCCTGGAAGCACCATGCTGTAGCATCTATAGGAAATGGACTCTCATAGACNATCAGCTTACAGTCTTCATTGGCCAATCTTGTAGAAGCCATGAAAGTGCTCAGACTGGCACGCANCCNATCAGCTGAAGATGAACAGGTATGTGTCAGCACAACGACNACCTTCTCCAGCACCTGCCCACGCTCGGCAATGAACTTGAGAAAATCAAGCTCGCTTCTTTGCATTCTGAATTCACGCATGATAACGTTCTTGATGTGCTTCTGGAGGCACTCATTGGGGGAGGTTCTCCTGCACAACTTGGGATTGAGCTTGCCGGNNGGTGTTGCCACTAAAAGTGGTCTCTGACT]




>consensus_2590#0
TTTTTTTTTTTTTAGACGAGCTCATGCCTTCTCGATTAGAAGCTCTCAAAAAAAATAATT
GTTGCTCATGCGACCATGTATGAGGATATCTGTTAATTACTGTCATATAGCCCCTGGATA
AAAGCACAAGTCTTCCAACACGGATCATATAAAATTTAGTGATTACAGTGACAATGCTAG
TGAGAAGCTCTTCTGCCAGCACATCTAATTACTTTAATTTACTTGATCTTAGGTGAATAT
CTTGCTTGTAGATGCTGCAACAGAAAACTAATCAGCTCGGCATGAGGCGCCATCCTTGAA
GCATTTTGAAACATCGAAAGGGTCCTTTGACATGTTGAATGCCCCCTGGAAGCACCATGC
TGTAGCATCTATAGGAAATGGACTCTCATAGACNATCAGCTTACAGTCTTCATTGGCCAA
TCTTGTAGAAGCCATGAAAGTGCTCAGACTGGCACGCANCCNATCAGCTGAAGATGAACA
GGTATGTGTCAGCACAACGACNACCTTCTCCAGCACCTGCCCACGCTCGGCAATGAACTT
GAGAAAATCAAGCTCGCTTCTTTGCATTCTGAATTCACGCATGATAACGTTCTTGATGTG
CTTCTGGAGGCACTCATTGGGGGAGGTTCTCCTGCACAACTTGGGATTGAGCTTGCCGGN
NGGTGTTGCCACTAAAAGTGGTCTCTGACT

consensusID : consensus_2590#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTAATCTCAAGGAACATTCTTAATGAAATTAGTAGTAATACAAAAGCAAGTGAAATATTAACATTACCAGGTGCATACTCATCTAGAAGTAGTTTAGGCTTTAGATAACTGCATGATAAATAACACAGCTAAATATCTTCAAAACATAAAAGTCACTCAGGCTGGCAAGTAGAGCTCTTCCCAATCCCCAAAAAGGGCATAGCCCACAACCTAGGAGAGTAGGGGTACCTTGCTTGTAGATGCTGGAACAGAAGACTAATCAGCTGGGCATGAGGCGCCATCCTTGAAGCATTTTGAAACATCAAAAGGGCCCTTTGACATGGTGAATGCCCCCTGGAACCACCATGCTGGAGCATGTATAGGAAAGGGACTGTCATAGACGATGAGGTAAGAGGCTTGGATTGGGCAAGTTTGTAAAAGCCATGGAAGCGGTGAGACTGGGGGCGGGCGCGAGGAGTTGGACATGACCCGGGTTGTGGGCGTCGACGGACGCGCTTTTGGAGGGGTGGGCACGCCGCAGCGGTCGGCGGGGTGAACTCGTGCGTGGGTTCTTTGGCTCGCCGGATGGCGGGCCGCTGTGCTGGTCTCCGACGGGCCCCTTGCCGGGTTCGCGCCTCCTC]

[+] EMBL CA763246             [TTTTTTTTTTTTTTTTTTTAATCTCAAGGAACATTCTTAATGAAATTAGTAGTAATACAAAAGCAAGTGAAATATTAACATTACCAGGTGCATACTCATCTAGAAGTAGTTTAGGCTTTAGATAACTGCATGATAAATAACACAGCTAAATATCTTCAAAACATAAAAGTCACTCAGGCTGGCAAGTAGAGCTCTTCCCAATCCCCAAAAAGGGCATAGCCCACAACCTAGGAGAGTAGGGGTACCTTGCTTGTAGATGCTGGAACAGAAGACTAATCAGCTGGGCATGAGGCGCCATCCTTGAAGCATTTTGAAACATCAAAAGGGCCCTTTGACATGGTGAATGCCCCCTGGAACCACCATGCTGGAGCATGTATAGGAAAGGGACTGTCATAGACGATGAGGTAAGAGGCTTGGATTGGGCAAGTTTGTAAAAGCCATGGAAGCGGTGAGACTGGGGGCGGGCGCGAGGAGTTGGACATGACCCGGGTTGTGGGCGTCGACGGACGCGCTTTTGGAGGGGTGGGCACGCCGCAGCGGTCGGCGGGGTGAACTCGTGCGTGGGTTCTTTGGCTCGCCGGATGGCGGGCCGCTGTGCTGGTCTCCGACGGGCCCCTTGCCGGGTTCGCGCCTCCTC]




>consensus_2590#1
TTTTTTTTTTTTTTTTTTTAATCTCAAGGAACATTCTTAATGAAATTAGTAGTAATACAA
AAGCAAGTGAAATATTAACATTACCAGGTGCATACTCATCTAGAAGTAGTTTAGGCTTTA
GATAACTGCATGATAAATAACACAGCTAAATATCTTCAAAACATAAAAGTCACTCAGGCT
GGCAAGTAGAGCTCTTCCCAATCCCCAAAAAGGGCATAGCCCACAACCTAGGAGAGTAGG
GGTACCTTGCTTGTAGATGCTGGAACAGAAGACTAATCAGCTGGGCATGAGGCGCCATCC
TTGAAGCATTTTGAAACATCAAAAGGGCCCTTTGACATGGTGAATGCCCCCTGGAACCAC
CATGCTGGAGCATGTATAGGAAAGGGACTGTCATAGACGATGAGGTAAGAGGCTTGGATT
GGGCAAGTTTGTAAAAGCCATGGAAGCGGTGAGACTGGGGGCGGGCGCGAGGAGTTGGAC
ATGACCCGGGTTGTGGGCGTCGACGGACGCGCTTTTGGAGGGGTGGGCACGCCGCAGCGG
TCGGCGGGGTGAACTCGTGCGTGGGTTCTTTGGCTCGCCGGATGGCGGGCCGCTGTGCTG
GTCTCCGACGGGCCCCTTGCCGGGTTCGCGCCTCCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2590#0      --TTTTTTTTTTTTTAGACGAGCTCATG---CCTTCTCGATTAGA--AGCTCTCAAA-AA 52
consensus_2590#1      TTTTTTTTTTTTTTTTTTTAATCTCAAGGAACATTCTTAATGAAATTAGTAGTAATACAA 60
                        *************     * **** *   * ****  ** * *  **   * * * **

consensus_2590#0      AAATAATTGT--TGCTCATGCGACCATGTATGAGGATATCTGTTAATTACTGTCATATAG 110
consensus_2590#1      AAGCAAGTGAAATATTAACATTACCAGGTGCATACTCATCTAGAAGTAGTT------TAG 114
                      **  ** **   *  * *    **** **        ****   * *   *      ***

consensus_2590#0      CCCCTGGATAAAAGCACAAGTCTTCCAACACGGATCATATAAAATTTAGTGATTACAGTG 170
consensus_2590#1      GCTTTAGATAACTGCATGATAAAT--AACACAG-CTAAATATCTTCAAAACATAAAAGTC 171
                       *  * *****  ***  *    *  ***** *   * ***   *  *   ** * *** 

consensus_2590#0      ACA-ATGCTAGTGAGAAGCTCTTCTGCCAGCACATCTAATTACTTTAATTTACTTGATCT 229
consensus_2590#1      ACTCAGGCTGGCAAGTAGAGCTCTTCCCAATCCCCAAAAAGGGCATAGCCCACAACCTAG 231
                      **  * *** *  ** **  **  * ***   *    **      **    **    *  

consensus_2590#0      TAGGT---GAATATCTTGCTTGTAGATGCTGCAACAGAAAACTAATCAGCTCGGCATGAG 286
consensus_2590#1      GAGAGTAGGGGTACCTTGCTTGTAGATGCTGGAACAGAAGACTAATCAGCTGGGCATGAG 291
                       **     *  ** ***************** ******* *********** ********

consensus_2590#0      GCGCCATCCTTGAAGCATTTTGAAACATCGAAAGGGTCCTTTGACATGTTGAATGCCCCC 346
consensus_2590#1      GCGCCATCCTTGAAGCATTTTGAAACATCAAAAGGGCCCTTTGACATGGTGAATGCCCCC 351
                      ***************************** ****** *********** ***********

consensus_2590#0      TGGAAGCACCATGCTGTAGCATCTATAGGAAATGGACTCTCATAGACNATCAGCTTACAG 406
consensus_2590#1      TGGAACCACCATGCTGGAGCATGTATAGGAAAGGGACTGTCATAGACGATGAGGTAAGAG 411
                      ***** ********** ***** ********* ***** ******** ** ** * * **

consensus_2590#0      TCTTC-ATTGGCCAATCTTGTAGAAGCCATGAAAGTGCTCAGACTGGCA-CGCANCCNAT 464
consensus_2590#1      GCTTGGATTGGGCAAGTTTGTAAAAGCCATGGAAGCGGTGAGACTGGGGGCGGGCGCGAG 471
                       ***  ***** ***  ***** ******** *** * * *******   **    * * 

consensus_2590#0      CAGCTGAAGATGAACAGGTATGTGTCAGCACAACGACNACCTTCTCCAGCACCTGCCCAC 524
consensus_2590#1      GAGTTGGACATGACCCGGGTTGTGGGCGT-CGACGGACGCGCTTTTGGAGGGGTGGGCAC 530
                       ** ** * **** * **  ****   *  * ***    *  * *        **  ***

consensus_2590#0      GCTCGGCAATGAACTTGAGAAAATCAAGCTCGCTTCTTTGCATTCTGAATTCACGCATGA 584
consensus_2590#1      GCC--GCAGCGGTC---GGCGGGGTGAACTCGTGCGTGGGTTCTTTGGCTCGCCGGATGG 585
                      **   ***  *  *    *       * ****    *  *   * **  *   ** *** 

consensus_2590#0      TAACGTTCTTGATGTGCTTCTGGAGGCACTCATTGGGGGAGGTTCTCCTGCACAACTTGG 644
consensus_2590#1      CGG-GCCGCTGTGCTGGTCTCCGACGGGCCCCTTGCCGGGTTCGCGCCTCCTC------- 637
                          *    **   ** *    ** *  * * ***  **     * *** * *       

consensus_2590#0      GATTGAGCTTGCCGGNNGGTGTTGCCACTAAAAGTGGTCTCTGACT 690
consensus_2590#1      ----------------------------------------------