These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [TTCGTCGCAAAATTTAAATTGATGATTAAATGATGGCATGTAACTCAATGCTCCACGACATAAAAATTGTAATGGTTATGCAACTAAAGTTCAACTGAAATGGCACCTACTGTGTAACAAATCTGAAGTTCTGAACCCATCTTTGGGTTACAAATTGGAATCAGGTATGCTTGCTAATCTCTTACTTCTAGAGCTAAATAAGCTTATCTGTTCTACTAGTTTCACAGCATACGGAACACTCGAACTGCATCTCTGTTCTTCGGATTCCCCTTGTAGATGGTCATCGTCCCCTCGTCGAGATCAACCAAGACGGTGCACAGAGTGTACAGTGTTGGACCTGTCATGTAAATCGGGTACTTGTCATCGGCCGTGTCCCCGAGCAGCGACAGCGCCTTCTCCTTGGTGTCCGGCGAGAGCTCCGCCGCTCTCCTCTCCCTGCTCATGGAGTTCTCGTCCTGCACCTGGTTGACCTGGAGATGGCGGTACATGTTGGCGTGGAAAAAGGGCGCGGCGGCGGCCTCGCGCACGGAGAAGCGGTTGCCGGAGGCGGTCTCGACGTTGACGATCCTCCGGCGCCGGACGTCCATCAGGTTGTAGCTGTGGCCGACCGACATGGCCGGCGAGCTCACCCTATTCATGGCGTCTTCGAGG] [+] EMBL CB675954 [TTCGTCGCAAAATTTAAATTGATGATTAAATGATGGCATGTAACTCAATGCTCCACGACATAAAAATTGTAATGGTTATGCAACTAAAGTTCAACTGAAATGGCACCTACTGTGTAACAAATCTGAAGTTCTGAACCCATCTTTGGGTTACAAATTGGAATCAGGTATGCTTGCTAATCTCTTACTTCTAGAGCTAAATAAGCTTATCTGTTCTACTAGTTTCACAGCATACGGAACACTCGAACTGCATCTCTGTTCTTCGGATTCCCCTTGTAGATGGTCATCGTCCCCTCGTCGAGATCAACCAAGACGGTGCACAGAGTGTACAGTGTTGGACCTGTCATGTAAATCGGGTACTTGTCATCGGCCGTGTCCCCGAGCAGCGACAGCGCCTTCTCCTTGGTGTCCGGCGAGAGCTCCGCCGCTCTCCTCTCCCTGCTCATGGAGTTCTCGTCCTGCACCTGGTTGACCTGGAGATGGCGGTACATGTTGGCGTGGAAAAAGGGCGCGGCGGCGGCCTCGCGCACGGAGAAGCGGTTGCCGGAGGCGGTCTCGACGTTGACGATCCTCCGGCGCCGGACGTCCATCAGGTTGTAGCTGTGGCCGACCGACATGGCCGGCGAGCTCACCCTATTCATGGCGTCTTCGAGG] consensusID : consensus_2593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [TCACAGAGGAGGAAGATCAACACCACCACCGGGAAGACGAAGCCGCCGCCGTCGCCGCCGACGCCGACGACGACTGCTCCGACGTCCTGATCGTCGGCGAGTCGGCGGCGATCGCCGCGCACAACGAGGACGCCAACGTCGCGCTCCTCGGCCACACCTACGTGGTGAAGGCCACCTCGCCGGACGGCTCGTCGTCGTTCACCGCCTACACCTACGCCGGCGAGCTCCCCACCTGCGCCTTCGGCTTCAACAGCAACGGAGTGGCGTTCACGCTCGACTCCGTCCCGCCGGCGAGCGGCGAGGTCGTCGCCGGCGCCATCGCCCGGAACTTCGTCTCGCGCGACCTCCTCGAAGCGACGAGCCTCGAAGACGCCATGAATATGGTGAGCTCG] [+] EMBL CB675953 [TCACAGAGGAGGAAGATCAACACCACCACCGGGAAGACGAAGCCGCCGCCGTCGCCGCCGACGCCGACGACGACTGCTCCGACGTCCTGATCGTCGGCGAGTCGGCGGCGATCGCCGCGCACAACGAGGACGCCAACGTCGCGCTCCTCGGCCACACCTACGTGGTGAAGGCCACCTCGCCGGACGGCTCGTCGTCGTTCACCGCCTACACCTACGCCGGCGAGCTCCCCACCTGCGCCTTCGGCTTCAACAGCAACGGAGTGGCGTTCACGCTCGACTCCGTCCCGCCGGCGAGCGGCGAGGTCGTCGCCGGCGCCATCGCCCGGAACTTCGTCTCGCGCGACCTCCTCGAAGCGACGAGCCTCGAAGACGCCATGAATATGGTGAGCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2593#0 TTCGTCGCAAAATTTAAATTGATGATTAAATGATGGCATGTAACTCAATGCTCCACGACA 60 consensus_2593#1 ------------------------------------------------------------ consensus_2593#0 TAAAAATTGTAATGGTTATGCAACTAAAGTTCAACTGAAATGGCACCTACTGTGTAACAA 120 consensus_2593#1 ------------------------------------------------------------ consensus_2593#0 ATCTGAAGTTCTGAACCCATCTTTGGGTTACAAATTGGAATCAGGTATGCTTGCTAATCT 180 consensus_2593#1 ------------------------------------------------------------ consensus_2593#0 CTTACTTCTAGAGCTAAATAAGCTTATCTGTTCTACTAGTTTCACAGCATACGGAACACT 240 consensus_2593#1 ------------------------------TCACAGAGGAGGAAGATCAACACCACCACC 30 * * * * * ** * *** consensus_2593#0 CGAACTGCATCTCTGTTCTTCGGATTCCCCTTGTAGATGGTCATCGTCCCCTCGTCGAGA 300 consensus_2593#1 GGGAAGACGAAGCCGCCGCCGTCGCCGCCGACGCCGACGACGACTGCTCCGACGTCCTGA 90 * * * * * ** * ** * * * ** **** ** consensus_2593#0 TCAACCAAGACGGTGCACAGAGTGTACAGTGTTGGACCTGTCATGTAAATCGGGTACTTG 360 consensus_2593#1 TCGTCGGCGA--GTCGGCGGCGATCGCCGCGCACAACGAGG-ACGCCAACGTCGCGC--- 144 ** * ** ** * * * * * * ** * * * ** * * consensus_2593#0 TCATCGGCCGTGTCCCCGAGCAGCGACAGCGCCTTCTCCTTGGTGTCCGGCGAGAGCTCC 420 consensus_2593#1 TCCTCGGCCACA--CCTACGTGGTGAAGGCCACCTCGCCGGACGGCTCGTCGTCG--TTC 200 ** ****** ** * * ** ** * ** ** * ** ** * * consensus_2593#0 GCCGCTCTCCTCTCCCTGCTCATGGAGTTCTCGTCCTGCACCTGGTTGACCTGGAGATGG 480 consensus_2593#1 ACCGCCTACACCTACGC---CGGCGAGCTCCCCACCTGCGCCT--TCGGCTTCAACA--- 252 **** * ** * * *** ** * ***** *** * * * * * * consensus_2593#0 CGGTACATGTTGGCGTGGAAAAAGGGCGCGGCGGCGGCCTCGCGCACGGAGAAGCGGTTG 540 consensus_2593#1 -GCAACGGAGTGGCGTTCACGCTCGACTCCGTCCCG--CCGGCGAGCGGCGAGGTCGTCG 309 * ** ****** * * * * * ** * *** *** ** * ** * consensus_2593#0 CCGGAGGCGGTCTCGACGTTGACGATCCTCCGGCGCCGGACGTCCATCAGGTTGTAGCTG 600 consensus_2593#1 CCGG---CGCCATCG-CCCGGAACTTCGTCTCGCGC--GACCTCCTCGAAGCGACGAGCC 363 **** ** *** * ** ** ** **** *** *** * * consensus_2593#0 TGGCCGAC-CGACATGGCCGGCGAGCTCACCCTATTCATGGCGTCTTCGAGG 651 consensus_2593#1 TCGAAGACGCCATGAATATGGTGAGCTCG----------------------- 392 * * *** * * ** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||