cluster # 260

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Oryza sativa
cluster # 260 cluster # 260 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_260#0 length = 702 sequences # 1

consensus_260#1 length = 319 sequences # 1

consensusID : consensus_260#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [GCACAGCACAATCGCTTTAGCTACCTTGAGAAACTCTTCTGCATTGGATCGATCTGCAATAATGGCGCGGAAAGTAGGCTTTGTCCTGGTGCTACTGGCGGCGGCGACGCTCGCCATGGAGGCCGGAACGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACGCCGCCCGGCGCGGCGAGGGCGTGGACCTCCCCGACGTGGCGTGGAACGCGACCCTGGAGGCGTTCGCGGAGAGCGTGGTGGCGAGCGCCGCCGCCGGCGGCGCGTGCGATCTCCGGCACACGTCGGGCAGCGGCTACGGCGAGAACCTCTACTGGGGCCCCGCCGGGAAGGCGTGGTCGGCGGCGGACGCGGTTGGCTTGTGGATGGAGGAGAAGGCGTCCTACGTGTACAGCAGCAACACCTGCACCAAAGGGGCGCTGCTCGACTGCGGCCACTACACGCAGATCGTGTGGCGGAGCACGACGTCGATCGGCTGCGGCCGCGCCGTCTGCAACAACGGCGATGTCCTCATCAGCTGCAACTATTTCCCGCCCGGCAACGTCCCCAACGAGCGCCCGTACTAGCTAGTAGAATTAATACTGGAGTAGATGCATGTACGTTAGGCGCGCATCAGATATCTATATGTAAAACATACAGAATACAGTACGTTATTCGTACTTAAGGAGTACATGATAAATAAAGGATT]

[+] EMBL AK062949             [GCACAGCACAATCGCTTTAGCTACCTTGAGAAACTCTTCTGCATTGGATCGATCTGCAATAATGGCGCGGAAAGTAGGCTTTGTCCTGGTGCTACTGGCGGCGGCGACGCTCGCCATGGAGGCCGGAACGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACGCCGCCCGGCGCGGCGAGGGCGTGGACCTCCCCGACGTGGCGTGGAACGCGACCCTGGAGGCGTTCGCGGAGAGCGTGGTGGCGAGCGCCGCCGCCGGCGGCGCGTGCGATCTCCGGCACACGTCGGGCAGCGGCTACGGCGAGAACCTCTACTGGGGCCCCGCCGGGAAGGCGTGGTCGGCGGCGGACGCGGTTGGCTTGTGGATGGAGGAGAAGGCGTCCTACGTGTACAGCAGCAACACCTGCACCAAAGGGGCGCTGCTCGACTGCGGCCACTACACGCAGATCGTGTGGCGGAGCACGACGTCGATCGGCTGCGGCCGCGCCGTCTGCAACAACGGCGATGTCCTCATCAGCTGCAACTATTTCCCGCCCGGCAACGTCCCCAACGAGCGCCCGTACTAGCTAGTAGAATTAATACTGGAGTAGATGCATGTACGTTAGGCGCGCATCAGATATCTATATGTAAAACATACAGAATACAGTACGTTATTCGTACTTAAGGAGTACATGATAAATAAAGGATT]




>consensus_260#0
GCACAGCACAATCGCTTTAGCTACCTTGAGAAACTCTTCTGCATTGGATCGATCTGCAAT
AATGGCGCGGAAAGTAGGCTTTGTCCTGGTGCTACTGGCGGCGGCGACGCTCGCCATGGA
GGCCGGAACGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACGCCGC
CCGGCGCGGCGAGGGCGTGGACCTCCCCGACGTGGCGTGGAACGCGACCCTGGAGGCGTT
CGCGGAGAGCGTGGTGGCGAGCGCCGCCGCCGGCGGCGCGTGCGATCTCCGGCACACGTC
GGGCAGCGGCTACGGCGAGAACCTCTACTGGGGCCCCGCCGGGAAGGCGTGGTCGGCGGC
GGACGCGGTTGGCTTGTGGATGGAGGAGAAGGCGTCCTACGTGTACAGCAGCAACACCTG
CACCAAAGGGGCGCTGCTCGACTGCGGCCACTACACGCAGATCGTGTGGCGGAGCACGAC
GTCGATCGGCTGCGGCCGCGCCGTCTGCAACAACGGCGATGTCCTCATCAGCTGCAACTA
TTTCCCGCCCGGCAACGTCCCCAACGAGCGCCCGTACTAGCTAGTAGAATTAATACTGGA
GTAGATGCATGTACGTTAGGCGCGCATCAGATATCTATATGTAAAACATACAGAATACAG
TACGTTATTCGTACTTAAGGAGTACATGATAAATAAAGGATT

consensusID : consensus_260#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [GCAGCTTAGCTTAATTAGCATGGCGCAGAAAGCCTTTGCCCTCGTGCTGCTGGCAGGCAGGCGACGCTGGCCATGGCAGGCCAGCACAGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACGCCGCCCGGCGCGGCGAGGGCGCCGGCCTCCCCGACGTGGCGTGGAGCACGACGCTGCAGGCGTTCGCGGAGAGCTACGTGGCGCAGCTCGCCGCCGCCACCACCTGCAGCCTCGCGCACTCCAACAGCGAGGACCTGGGCTACGGCGAGAACCTGTACGGCCCGGCCGCCGCCGGCAGCAGCGC]

[+] EMBL AU184847             [GCAGCTTAGCTTAATTAGCATGGCGCAGAAAGCCTTTGCCCTCGTGCTGCTGGCAGGCAGGCGACGCTGGCCATGGCAGGCCAGCACAGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACGCCGCCCGGCGCGGCGAGGGCGCCGGCCTCCCCGACGTGGCGTGGAGCACGACGCTGCAGGCGTTCGCGGAGAGCTACGTGGCGCAGCTCGCCGCCGCCACCACCTGCAGCCTCGCGCACTCCAACAGCGAGGACCTGGGCTACGGCGAGAACCTGTACGGCCCGGCCGCCGCCGGCAGCAGCGC]




>consensus_260#1
GCAGCTTAGCTTAATTAGCATGGCGCAGAAAGCCTTTGCCCTCGTGCTGCTGGCAGGCAG
GCGACGCTGGCCATGGCAGGCCAGCACAGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCC
TCGACGCCCACAACGCCGCCCGGCGCGGCGAGGGCGCCGGCCTCCCCGACGTGGCGTGGA
GCACGACGCTGCAGGCGTTCGCGGAGAGCTACGTGGCGCAGCTCGCCGCCGCCACCACCT
GCAGCCTCGCGCACTCCAACAGCGAGGACCTGGGCTACGGCGAGAACCTGTACGGCCCGG
CCGCCGCCGGCAGCAGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_260#0      GCACAGCACAATCGCTTTAGCTACCTTGAGAAACTCTTCTGCATTGGATCGATCTGCAAT 60
consensus_260#1      -------------------------------------GCAGC-TTAGCTTAATTAGCA-- 20
                                                           * ** ** * *  **  ***  

consensus_260#0      AATGGCGCGGAAAGTAGGCTTTGTCCTGGTGCTACTGGCGGC--GGCGACGCTCGCCATG 118
consensus_260#1      --TGGCGCAGAAAGC---CTTTGCCCTCGTGCTGCTGGCAGGCAGGCGACGCTGGCCATG 75
                       ****** *****    ***** *** ***** ***** *   ********* ******

consensus_260#0      G-AGGCCGGAAC-GGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACG 176
consensus_260#1      GCAGGCCAGCACAGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACG 135
                     * ***** * ** ***********************************************

consensus_260#0      CCGCCCGGCGCGGCGAGGGCGTGGACCTCCCCGACGTGGCGTGGAACGCGACCCTGGAGG 236
consensus_260#1      CCGCCCGGCGCGGCGAGGGCGCCGGCCTCCCCGACGTGGCGTGGAGCACGACGCTGCAGG 195
                     *********************  * ******************** * **** *** ***

consensus_260#0      CGTTCGCGGAGAGCGTGGTGGCGAGCGCCGCCGCCGGCGGCGCGTGCGATCTCCGGCAC- 295
consensus_260#1      CGTTCGCGGAGAGCTACGTGGCGCAGCTCGCCGCCGCCACCACCTGCAGCCTCGCGCACT 255
                     **************   ******     ******** *  * * ***   ***  **** 

consensus_260#0      ---ACGTCGGGCAGC--GGCTACGGCGAGAACCTCTACTGGGGCCCCGCCGGGAAGGCGT 350
consensus_260#1      CCAACAGCGAGGACCTGGGCTACGGCGAGAACCTGTAC---GGCCCGGCC-----GCCGC 307
                        **  ** * * *  ***************** ***   ***** ***     * ** 

consensus_260#0      GGTCGGCGGCGGACGCGGTTGGCTTGTGGATGGAGGAGAAGGCGTCCTACGTGTACAGCA 410
consensus_260#1      CGGCAGCAGCGC------------------------------------------------ 319
                      * * ** ***                                                 

consensus_260#0      GCAACACCTGCACCAAAGGGGCGCTGCTCGACTGCGGCCACTACACGCAGATCGTGTGGC 470
consensus_260#1      ------------------------------------------------------------
                                                                                 

consensus_260#0      GGAGCACGACGTCGATCGGCTGCGGCCGCGCCGTCTGCAACAACGGCGATGTCCTCATCA 530
consensus_260#1      ------------------------------------------------------------
                                                                                 

consensus_260#0      GCTGCAACTATTTCCCGCCCGGCAACGTCCCCAACGAGCGCCCGTACTAGCTAGTAGAAT 590
consensus_260#1      ------------------------------------------------------------
                                                                                 

consensus_260#0      TAATACTGGAGTAGATGCATGTACGTTAGGCGCGCATCAGATATCTATATGTAAAACATA 650
consensus_260#1      ------------------------------------------------------------
                                                                                 

consensus_260#0      CAGAATACAGTACGTTATTCGTACTTAAGGAGTACATGATAAATAAAGGATT 702
consensus_260#1      ----------------------------------------------------