These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [GCACAGCACAATCGCTTTAGCTACCTTGAGAAACTCTTCTGCATTGGATCGATCTGCAATAATGGCGCGGAAAGTAGGCTTTGTCCTGGTGCTACTGGCGGCGGCGACGCTCGCCATGGAGGCCGGAACGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACGCCGCCCGGCGCGGCGAGGGCGTGGACCTCCCCGACGTGGCGTGGAACGCGACCCTGGAGGCGTTCGCGGAGAGCGTGGTGGCGAGCGCCGCCGCCGGCGGCGCGTGCGATCTCCGGCACACGTCGGGCAGCGGCTACGGCGAGAACCTCTACTGGGGCCCCGCCGGGAAGGCGTGGTCGGCGGCGGACGCGGTTGGCTTGTGGATGGAGGAGAAGGCGTCCTACGTGTACAGCAGCAACACCTGCACCAAAGGGGCGCTGCTCGACTGCGGCCACTACACGCAGATCGTGTGGCGGAGCACGACGTCGATCGGCTGCGGCCGCGCCGTCTGCAACAACGGCGATGTCCTCATCAGCTGCAACTATTTCCCGCCCGGCAACGTCCCCAACGAGCGCCCGTACTAGCTAGTAGAATTAATACTGGAGTAGATGCATGTACGTTAGGCGCGCATCAGATATCTATATGTAAAACATACAGAATACAGTACGTTATTCGTACTTAAGGAGTACATGATAAATAAAGGATT] [+] EMBL AK062949 [GCACAGCACAATCGCTTTAGCTACCTTGAGAAACTCTTCTGCATTGGATCGATCTGCAATAATGGCGCGGAAAGTAGGCTTTGTCCTGGTGCTACTGGCGGCGGCGACGCTCGCCATGGAGGCCGGAACGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACGCCGCCCGGCGCGGCGAGGGCGTGGACCTCCCCGACGTGGCGTGGAACGCGACCCTGGAGGCGTTCGCGGAGAGCGTGGTGGCGAGCGCCGCCGCCGGCGGCGCGTGCGATCTCCGGCACACGTCGGGCAGCGGCTACGGCGAGAACCTCTACTGGGGCCCCGCCGGGAAGGCGTGGTCGGCGGCGGACGCGGTTGGCTTGTGGATGGAGGAGAAGGCGTCCTACGTGTACAGCAGCAACACCTGCACCAAAGGGGCGCTGCTCGACTGCGGCCACTACACGCAGATCGTGTGGCGGAGCACGACGTCGATCGGCTGCGGCCGCGCCGTCTGCAACAACGGCGATGTCCTCATCAGCTGCAACTATTTCCCGCCCGGCAACGTCCCCAACGAGCGCCCGTACTAGCTAGTAGAATTAATACTGGAGTAGATGCATGTACGTTAGGCGCGCATCAGATATCTATATGTAAAACATACAGAATACAGTACGTTATTCGTACTTAAGGAGTACATGATAAATAAAGGATT] consensusID : consensus_260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [GCAGCTTAGCTTAATTAGCATGGCGCAGAAAGCCTTTGCCCTCGTGCTGCTGGCAGGCAGGCGACGCTGGCCATGGCAGGCCAGCACAGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACGCCGCCCGGCGCGGCGAGGGCGCCGGCCTCCCCGACGTGGCGTGGAGCACGACGCTGCAGGCGTTCGCGGAGAGCTACGTGGCGCAGCTCGCCGCCGCCACCACCTGCAGCCTCGCGCACTCCAACAGCGAGGACCTGGGCTACGGCGAGAACCTGTACGGCCCGGCCGCCGCCGGCAGCAGCGC] [+] EMBL AU184847 [GCAGCTTAGCTTAATTAGCATGGCGCAGAAAGCCTTTGCCCTCGTGCTGCTGGCAGGCAGGCGACGCTGGCCATGGCAGGCCAGCACAGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACGCCGCCCGGCGCGGCGAGGGCGCCGGCCTCCCCGACGTGGCGTGGAGCACGACGCTGCAGGCGTTCGCGGAGAGCTACGTGGCGCAGCTCGCCGCCGCCACCACCTGCAGCCTCGCGCACTCCAACAGCGAGGACCTGGGCTACGGCGAGAACCTGTACGGCCCGGCCGCCGCCGGCAGCAGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_260#0 GCACAGCACAATCGCTTTAGCTACCTTGAGAAACTCTTCTGCATTGGATCGATCTGCAAT 60 consensus_260#1 -------------------------------------GCAGC-TTAGCTTAATTAGCA-- 20 * ** ** * * ** *** consensus_260#0 AATGGCGCGGAAAGTAGGCTTTGTCCTGGTGCTACTGGCGGC--GGCGACGCTCGCCATG 118 consensus_260#1 --TGGCGCAGAAAGC---CTTTGCCCTCGTGCTGCTGGCAGGCAGGCGACGCTGGCCATG 75 ****** ***** ***** *** ***** ***** * ********* ****** consensus_260#0 G-AGGCCGGAAC-GGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACG 176 consensus_260#1 GCAGGCCAGCACAGGCGGCGGCGCAGAGCTCGCCGCAGGACTTCCTCGACGCCCACAACG 135 * ***** * ** *********************************************** consensus_260#0 CCGCCCGGCGCGGCGAGGGCGTGGACCTCCCCGACGTGGCGTGGAACGCGACCCTGGAGG 236 consensus_260#1 CCGCCCGGCGCGGCGAGGGCGCCGGCCTCCCCGACGTGGCGTGGAGCACGACGCTGCAGG 195 ********************* * ******************** * **** *** *** consensus_260#0 CGTTCGCGGAGAGCGTGGTGGCGAGCGCCGCCGCCGGCGGCGCGTGCGATCTCCGGCAC- 295 consensus_260#1 CGTTCGCGGAGAGCTACGTGGCGCAGCTCGCCGCCGCCACCACCTGCAGCCTCGCGCACT 255 ************** ****** ******** * * * *** *** **** consensus_260#0 ---ACGTCGGGCAGC--GGCTACGGCGAGAACCTCTACTGGGGCCCCGCCGGGAAGGCGT 350 consensus_260#1 CCAACAGCGAGGACCTGGGCTACGGCGAGAACCTGTAC---GGCCCGGCC-----GCCGC 307 ** ** * * * ***************** *** ***** *** * ** consensus_260#0 GGTCGGCGGCGGACGCGGTTGGCTTGTGGATGGAGGAGAAGGCGTCCTACGTGTACAGCA 410 consensus_260#1 CGGCAGCAGCGC------------------------------------------------ 319 * * ** *** consensus_260#0 GCAACACCTGCACCAAAGGGGCGCTGCTCGACTGCGGCCACTACACGCAGATCGTGTGGC 470 consensus_260#1 ------------------------------------------------------------ consensus_260#0 GGAGCACGACGTCGATCGGCTGCGGCCGCGCCGTCTGCAACAACGGCGATGTCCTCATCA 530 consensus_260#1 ------------------------------------------------------------ consensus_260#0 GCTGCAACTATTTCCCGCCCGGCAACGTCCCCAACGAGCGCCCGTACTAGCTAGTAGAAT 590 consensus_260#1 ------------------------------------------------------------ consensus_260#0 TAATACTGGAGTAGATGCATGTACGTTAGGCGCGCATCAGATATCTATATGTAAAACATA 650 consensus_260#1 ------------------------------------------------------------ consensus_260#0 CAGAATACAGTACGTTATTCGTACTTAAGGAGTACATGATAAATAAAGGATT 702 consensus_260#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||