These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2017 fasta sequence [GATGGATCCCCACGCCGGCGCAGTTGCCAGCGGCGAATCCGCCGGCGACGAGGACGACGGCAGCGGCGAGCACGAGACCCACCCGACGTCTCCCGCGCCCTCCGCCAACAGCAGGCCCCGGAAGCGCTCGCGCCTGACCGCCGCCGCAGACGAATCCACGACCGTCGACGACTGCTCCGCCGGCGGCAGCGGCAGCGGCAGCGGCGACGGCGGCGGCGGCGGCGGCGAGTCGGTGGGCGCCTGGCCCTACGACGAGAGCGCAGCCAGGGACGAGCTCGTGACGCTCATCGTCTCCCAGGATCTGCCCGTCGGGATCGCGGGCAGTGCGTCCTTCGAGGCCATGGTGCTGCAAGCGTTCTGCCCCCAGTTCGAGCGAATCGACAATGCTGTCACCATCAGAGACATCTTGGTGTTCCACGAAGACCATGTGGCGGGATTGAAGGAGGAGTTCACCGGTGGTGATCTCTCCTTCGCGTTGTCATGTGAAATCTGGGGGACTTCGTATCATAGGATGAGCTATCTCTGCGTGGCCGCTCACTATGTCGATGGGGATCACATTCTGAACAAGAGGGTGATTAGCTTCAAGCTTATCGACGGCGCGCCGACCGCGGAGGCGATGGCGCGGCGCATTCTTGATGTTGCCATGGAATACGGCATTGAGAATCGGATTGTTTCTGTTACTCTTGGGGATGGTTTAGCAGATGCTGAAACCATGGATGCATTGGCTCCTCTTCTTGGGTGGTACACCGGCGGATTTGTGTTCCTGCAGAGGTGCATTTTCAGCATCCTCAATGACATCGTTCGAGCTGGTTTGACTGAGATGGCTGAGCCTTTGGATGCTATTCGTTCCGCGATTGCGTACGTTTCCAGTTCGGAGGCGAATTTCGCCGAGTTTGAGAAGTGCTGCGTCGAGCGAGGCCAGAAGGCTAGGAAGCTATGGCCTGATTCCAAAGTAAGGTGGGATTCCACATATGACATGCTCAAGGAAGTGCTTCCCTACAAAGAAGTTCTGACTGACTTTGTCAATGGCAGTATGCAGCAAGGTTTCTTTCCGAGCACAATTGGTCGCTCCTCAGTATATTTCACAAGTTCCTCGCGAAGTTTTATAAGGCTGCTACCAAGTTGTCTGTTGTTTACAGTCAGACATCTTCCTTAACTTTGATTTACATCTGTGACATGGCAGTATTGTTTCGGTCTTATAGGACAGACCCTGTTTTCTCTGCCATTCTGAAACCAATGGAAGCAGTGTTTGTCAAATATTTTCAAAGAATTCCACGCCTCTATTGCTATGCTTTGATTTTAGATCCTCGGCTAAAATTACATGGCCTGGAAGTGGCCTTGAAGATGTTAGGTGAAGCCTTAAACATTGATTATTCAAGCACTTTCACACAAATTGCTGATGAATTTCTTGAAGTCCTTTCCATGTATGAAGAGAAGTTTGGCAGCACACTCCGTCCACCACCATCACCGCCCTCTTCACTGGTCTTTAGATTATTCGCTGCTAGACTGAAGGAGTTGGAGCTGAAGGAGTTGGAGCTTCAAAAGGATTCCTCGCCCTCTTCATCAGTACACCAACGAAAAGCCAAAAACGAGTTCAACAAGAAATACATCGAGACTCCATGCTCGTTGCGTCTTAATTCTCGTGGACCTGATCCCAATATTATCATGTGGTGGAAGGACAACAAACTTTTTCATGTTGTGTTAGCTCAACTAGCAAGGGATGTCCTTGCGTCTCCTGTGTCGACAGTCTCTTCTGCAGATGCATTCAACATCAACGGAAGAGTAGTTGAAGATCAAAGATCATGTCTAGCACCGGACATTTTAGAGGCAATCATGTGCCTGAAAGATTTTGGAAATGCTGCTACTCGAGAACAGGATAGAATGGTGAATGCTGAGTTTGCTAGTGTGGTATGCCTTGATATGTAATCAAGCAATCCAATGTGTTTTACCTCCTATGGTTCCAGTGTTCAGCTCATCTTTGTTTCTATCTATCTGATTAGTTAAATGAAGACATCGT] [+] EMBL AK106352 [GATGGATCCCCACGCCGGCGCAGTTGCCAGCGGCGAATCCGCCGGCGACGAGGACGACGGCAGCGGCGAGCACGAGACCCACCCGACGTCTCCCGCGCCCTCCGCCAACAGCAGGCCCCGGAAGCGCTCGCGCCTGACCGCCGCCGCAGACGAATCCACGACCGTCGACGACTGCTCCGCCGGCGGCAGCGGCAGCGGCAGCGGCGACGGCGGCGGCGGCGGCGGCGAGTCGGTGGGCGCCTGGCCCTACGACGAGAGCGCAGCCAGGGACGAGCTCGTGACGCTCATCGTCTCCCAGGATCTGCCCGTCGGGATCGCGGGCAGTGCGTCCTTCGAGGCCATGGTGCTGCAAGCGTTCTGCCCCCAGTTCGAGCGAATCGACAATGCTGTCACCATCAGAGACATCTTGGTGTTCCACGAAGACCATGTGGCGGGATTGAAGGAGGAGTTCACCGGTGGTGATCTCTCCTTCGCGTTGTCATGTGAAATCTGGGGGACTTCGTATCATAGGATGAGCTATCTCTGCGTGGCCGCTCACTATGTCGATGGGGATCACATTCTGAACAAGAGGGTGATTAGCTTCAAGCTTATCGACGGCGCGCCGACCGCGGAGGCGATGGCGCGGCGCATTCTTGATGTTGCCATGGAATACGGCATTGAGAATCGGATTGTTTCTGTTACTCTTGGGGATGGTTTAGCAGATGCTGAAACCATGGATGCATTGGCTCCTCTTCTTGGGTGGTACACCGGCGGATTTGTGTTCCTGCAGAGGTGCATTTTCAGCATCCTCAATGACATCGTTCGAGCTGGTTTGACTGAGATGGCTGAGCCTTTGGATGCTATTCGTTCCGCGATTGCGTACGTTTCCAGTTCGGAGGCGAATTTCGCCGAGTTTGAGAAGTGCTGCGTCGAGCGAGGCCAGAAGGCTAGGAAGCTATGGCCTGATTCCAAAGTAAGGTGGGATTCCACATATGACATGCTCAAGGAAGTGCTTCCCTACAAAGAAGTTCTGACTGACTTTGTCAATGGCAGTATGCAGCAAGGTTTCTTTCCGAGCACAATTGGTCGCTCCTCAGTATATTTCACAAGTTCCTCGCGAAGTTTTATAAGGCTGCTACCAAGTTGTCTGTTGTTTACAGTCAGACATCTTCCTTAACTTTGATTTACATCTGTGACATGGCAGTATTGTTTCGGTCTTATAGGACAGACCCTGTTTTCTCTGCCATTCTGAAACCAATGGAAGCAGTGTTTGTCAAATATTTTCAAAGAATTCCACGCCTCTATTGCTATGCTTTGATTTTAGATCCTCGGCTAAAATTACATGGCCTGGAAGTGGCCTTGAAGATGTTAGGTGAAGCCTTAAACATTGATTATTCAAGCACTTTCACACAAATTGCTGATGAATTTCTTGAAGTCCTTTCCATGTATGAAGAGAAGTTTGGCAGCACACTCCGTCCACCACCATCACCGCCCTCTTCACTGGTCTTTAGATTATTCGCTGCTAGACTGAAGGAGTTGGAGCTGAAGGAGTTGGAGCTTCAAAAGGATTCCTCGCCCTCTTCATCAGTACACCAACGAAAAGCCAAAAACGAGTTCAACAAGAAATACATCGAGACTCCATGCTCGTTGCGTCTTAATTCTCGTGGACCTGATCCCAATATTATCATGTGGTGGAAGGACAACAAACTTTTTCATGTTGTGTTAGCTCAACTAGCAAGGGATGTCCTTGCGTCTCCTGTGTCGACAGTCTCTTCTGCAGATGCATTCAACATCAACGGAAGAGTAGTTGAAGATCAAAGATCATGTCTAGCACCGGACATTTTAGAGGCAATCATGTGCCTGAAAGATTTTGGAAATGCTGCTACTCGAGAACAGGATAGAATGGTGAATGCTGAGTTTGCTAGTGTGGTATGCCTTGATATGTAATCAAGCAATCCAATGTGTTTTACCTCCTATGGTTCCAGTGTTCAGCTCATCTTTGTTTCTATCTATCTGATTAGTTAAATGAAGACATCGT] consensusID : consensus_2601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [GTTAGGTGAAGCCTTAAACATTGATTATTCAAGCACTTTCACACAAATTGCTGATGAATTTCTTAAAGTCCTTTCCATGTATGAAGAGAAGTTTGGCAGCACACTCCGTCCACCACCATCACCGCCCTCTTCACTGGTCTTTAGATTATTCGCTGCTAGACTGAAGGAGTTGGAGCTGAAGGAGTTGGAGCTTCAAAAGGATTCCTCGCCCTCTTCATCAGTACACCAACGAAAAGCCAAAAACGAGTTCAACAAGAAATACATCGAGGCTCCATGCTCGTTGCGTCTCAATTCTCATGGACCTGATCCCAATATTATCATGTGGTGGAAGGACAACAAACTGTTTCATGTTGTGTTAGCTCAACTAGCAAGGGATGTCCTTGCGTTTCCTGTGTCGACAGTCTCTTCTGCAGATGCATTCAACATCAACGGAAGAGTAGTTGAAGATCAAAGATCATGTCTAGCACCGGACATTTTAGAGGCAATCATGTGCCTGAAAGACTTTGAAAATGCTGCTACTCAAGAACAGGATAGAAAGGTGAATGCTGAGTTTGCTAGTGTGGTATGCCCTGATATGTAACCAAGCAATCCAATGTGTTTTACCTCCTATGGTTACCAACTAACATCTGCTTAGTTAAATGAAGACATCGTTATGGGCTTTAAAAAAAAAAAAAAAA] [-] EMBL CA763122 [GTTAGGTGAAGCCTTAAACATTGATTATTCAAGCACTTTCACACAAATTGCTGATGAATTTCTTAAAGTCCTTTCCATGTATGAAGAGAAGTTTGGCAGCACACTCCGTCCACCACCATCACCGCCCTCTTCACTGGTCTTTAGATTATTCGCTGCTAGACTGAAGGAGTTGGAGCTGAAGGAGTTGGAGCTTCAAAAGGATTCCTCGCCCTCTTCATCAGTACACCAACGAAAAGCCAAAAACGAGTTCAACAAGAAATACATCGAGGCTCCATGCTCGTTGCGTCTCAATTCTCATGGACCTGATCCCAATATTATCATGTGGTGGAAGGACAACAAACTGTTTCATGTTGTGTTAGCTCAACTAGCAAGGGATGTCCTTGCGTTTCCTGTGTCGACAGTCTCTTCTGCAGATGCATTCAACATCAACGGAAGAGTAGTTGAAGATCAAAGATCATGTCTAGCACCGGACATTTTAGAGGCAATCATGTGCCTGAAAGACTTTGAAAATGCTGCTACTCAAGAACAGGATAGAAAGGTGAATGCTGAGTTTGCTAGTGTGGTATGCCCTGATATGTAACCAAGCAATCCAATGTGTTTTACCTCCTATGGTTACCAACTAACATCTGCTTAGTTAAATGAAGACATCGTTATGGGCTTTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2601#0 GATGGATCCCCACGCCGGCGCAGTTGCCAGCGGCGAATCCGCCGGCGACGAGGACGACGG 60 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 CAGCGGCGAGCACGAGACCCACCCGACGTCTCCCGCGCCCTCCGCCAACAGCAGGCCCCG 120 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 GAAGCGCTCGCGCCTGACCGCCGCCGCAGACGAATCCACGACCGTCGACGACTGCTCCGC 180 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 CGGCGGCAGCGGCAGCGGCAGCGGCGACGGCGGCGGCGGCGGCGGCGAGTCGGTGGGCGC 240 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 CTGGCCCTACGACGAGAGCGCAGCCAGGGACGAGCTCGTGACGCTCATCGTCTCCCAGGA 300 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 TCTGCCCGTCGGGATCGCGGGCAGTGCGTCCTTCGAGGCCATGGTGCTGCAAGCGTTCTG 360 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 CCCCCAGTTCGAGCGAATCGACAATGCTGTCACCATCAGAGACATCTTGGTGTTCCACGA 420 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 AGACCATGTGGCGGGATTGAAGGAGGAGTTCACCGGTGGTGATCTCTCCTTCGCGTTGTC 480 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 ATGTGAAATCTGGGGGACTTCGTATCATAGGATGAGCTATCTCTGCGTGGCCGCTCACTA 540 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 TGTCGATGGGGATCACATTCTGAACAAGAGGGTGATTAGCTTCAAGCTTATCGACGGCGC 600 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 GCCGACCGCGGAGGCGATGGCGCGGCGCATTCTTGATGTTGCCATGGAATACGGCATTGA 660 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 GAATCGGATTGTTTCTGTTACTCTTGGGGATGGTTTAGCAGATGCTGAAACCATGGATGC 720 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 ATTGGCTCCTCTTCTTGGGTGGTACACCGGCGGATTTGTGTTCCTGCAGAGGTGCATTTT 780 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 CAGCATCCTCAATGACATCGTTCGAGCTGGTTTGACTGAGATGGCTGAGCCTTTGGATGC 840 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 TATTCGTTCCGCGATTGCGTACGTTTCCAGTTCGGAGGCGAATTTCGCCGAGTTTGAGAA 900 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 GTGCTGCGTCGAGCGAGGCCAGAAGGCTAGGAAGCTATGGCCTGATTCCAAAGTAAGGTG 960 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 GGATTCCACATATGACATGCTCAAGGAAGTGCTTCCCTACAAAGAAGTTCTGACTGACTT 1020 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 TGTCAATGGCAGTATGCAGCAAGGTTTCTTTCCGAGCACAATTGGTCGCTCCTCAGTATA 1080 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 TTTCACAAGTTCCTCGCGAAGTTTTATAAGGCTGCTACCAAGTTGTCTGTTGTTTACAGT 1140 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 CAGACATCTTCCTTAACTTTGATTTACATCTGTGACATGGCAGTATTGTTTCGGTCTTAT 1200 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 AGGACAGACCCTGTTTTCTCTGCCATTCTGAAACCAATGGAAGCAGTGTTTGTCAAATAT 1260 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 TTTCAAAGAATTCCACGCCTCTATTGCTATGCTTTGATTTTAGATCCTCGGCTAAAATTA 1320 consensus_2601#1 ------------------------------------------------------------ consensus_2601#0 CATGGCCTGGAAGTGGCCTTGAAGATGTTAGGTGAAGCCTTAAACATTGATTATTCAAGC 1380 consensus_2601#1 --------------------------GTTAGGTGAAGCCTTAAACATTGATTATTCAAGC 34 ********************************** consensus_2601#0 ACTTTCACACAAATTGCTGATGAATTTCTTGAAGTCCTTTCCATGTATGAAGAGAAGTTT 1440 consensus_2601#1 ACTTTCACACAAATTGCTGATGAATTTCTTAAAGTCCTTTCCATGTATGAAGAGAAGTTT 94 ****************************** ***************************** consensus_2601#0 GGCAGCACACTCCGTCCACCACCATCACCGCCCTCTTCACTGGTCTTTAGATTATTCGCT 1500 consensus_2601#1 GGCAGCACACTCCGTCCACCACCATCACCGCCCTCTTCACTGGTCTTTAGATTATTCGCT 154 ************************************************************ consensus_2601#0 GCTAGACTGAAGGAGTTGGAGCTGAAGGAGTTGGAGCTTCAAAAGGATTCCTCGCCCTCT 1560 consensus_2601#1 GCTAGACTGAAGGAGTTGGAGCTGAAGGAGTTGGAGCTTCAAAAGGATTCCTCGCCCTCT 214 ************************************************************ consensus_2601#0 TCATCAGTACACCAACGAAAAGCCAAAAACGAGTTCAACAAGAAATACATCGAGACTCCA 1620 consensus_2601#1 TCATCAGTACACCAACGAAAAGCCAAAAACGAGTTCAACAAGAAATACATCGAGGCTCCA 274 ****************************************************** ***** consensus_2601#0 TGCTCGTTGCGTCTTAATTCTCGTGGACCTGATCCCAATATTATCATGTGGTGGAAGGAC 1680 consensus_2601#1 TGCTCGTTGCGTCTCAATTCTCATGGACCTGATCCCAATATTATCATGTGGTGGAAGGAC 334 ************** ******* ************************************* consensus_2601#0 AACAAACTTTTTCATGTTGTGTTAGCTCAACTAGCAAGGGATGTCCTTGCGTCTCCTGTG 1740 consensus_2601#1 AACAAACTGTTTCATGTTGTGTTAGCTCAACTAGCAAGGGATGTCCTTGCGTTTCCTGTG 394 ******** ******************************************* ******* consensus_2601#0 TCGACAGTCTCTTCTGCAGATGCATTCAACATCAACGGAAGAGTAGTTGAAGATCAAAGA 1800 consensus_2601#1 TCGACAGTCTCTTCTGCAGATGCATTCAACATCAACGGAAGAGTAGTTGAAGATCAAAGA 454 ************************************************************ consensus_2601#0 TCATGTCTAGCACCGGACATTTTAGAGGCAATCATGTGCCTGAAAGATTTTGGAAATGCT 1860 consensus_2601#1 TCATGTCTAGCACCGGACATTTTAGAGGCAATCATGTGCCTGAAAGACTTTGAAAATGCT 514 *********************************************** **** ******* consensus_2601#0 GCTACTCGAGAACAGGATAGAATGGTGAATGCTGAGTTTGCTAGTGTGGTATGCCTTGAT 1920 consensus_2601#1 GCTACTCAAGAACAGGATAGAAAGGTGAATGCTGAGTTTGCTAGTGTGGTATGCCCTGAT 574 ******* ************** ******************************** **** consensus_2601#0 ATGTAATCAAGCAATCCAATGTGTTTTACCTCCTATGGTT-CCAGTGTTCAGCT-CATCT 1978 consensus_2601#1 ATGTAACCAAGCAATCCAATGTGTTTTACCTCCTATGGTTACCAACTAACATCTGCTTAG 634 ****** ********************************* *** ** ** * * consensus_2601#0 TTGTTTCTATCTATC-TGATTAG--TTAAATGAAGACATCGT- 2017 consensus_2601#1 TTAAATGAAGACATCGTTATGGGCTTTAAAAAAAAAAAAAAAA 677 ** * * *** * ** * ***** ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||