cluster # 2603

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Oryza sativa
cluster # 2603 cluster # 2603 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2603#0 length = 1012 sequences # 1

consensus_2603#1 length = 750 sequences # 1

consensusID : consensus_2603#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1012
fasta sequence

                              [GTGGGGGAACCTCGCCGGCGATCCCTCCAAAGCCCAGAAGCGACGCCGCCGCCGCCGCCGCCAGCCGCCACGTTATCCATGAGGCCTCTCCTCGCCCGCCTCTTCGCCCCGACTTACATTGCCATGGGTTTCTCCTCCTCCGCGTCGCCGCCGTCCCGGCGGCTTGCCCACCTCACACGCCACCTCCTCCTCAGCTCCGGCGAGCTCTCCTCCTCGGTGGGCGCCCCCGCCGCCGCCGCCCGGCCGGCCTACCTCGCCGCCCCCAAGGGCTACGCCGCCGTGCTGGTCTGCCTCTTCGAGGACCCCCACGGCGGCGACCCCCGCGTCATCCTCACCAAGCGCGCCGCCTCCCTCTCCTCCCACTCCGGGGAGGTGTCGCTGCCGGGAGGGAAGGTGGAGGAGGGGGATGCGGATGCGACGGCGACGGCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTCCAAGAACGGACTCCATGTAACTCCTGTAATCGGCATTCTTTCGGATAAAGCTTTATTCAAGCCTGTCTTGAATGAATCTGAAGTGGCAGACATCTTTGATGCACCTCTAGAGATGTTCCTGAAGGATGATAACCGGAAAACACAAGAATCGAATTGGATGGGCATGAATATTCCAGTCCAGTCTTTTGAGTACCAGTCAGAGGACAAAACGTTTGTGATTTGGGGCTTAACGGCACACATTCTGACTCGTGCTGCAGCAGTCGTTTTACCGAGAGAACCATCATTTGTTGAATTTCGACCAAGATATGTGAACTCACCCTCTGGAGATACGAATGAAACAAAACGCTGATGCAATACCATAATCGTCAATATGTAATTCTAGCATTTATCCCCTCCATTCAGAGGCAGCTGCTTGTGCCTGTCTATAGAAAATCAGCTTACTGTACTTTTTGTATGTACACGATAGTCCATAGAATGTTGCATCATCAGCATGTTGGAAAATTTGT]

[+] EMBL AK064744             [GTGGGGGAACCTCGCCGGCGATCCCTCCAAAGCCCAGAAGCGACGCCGCCGCCGCCGCCGCCAGCCGCCACGTTATCCATGAGGCCTCTCCTCGCCCGCCTCTTCGCCCCGACTTACATTGCCATGGGTTTCTCCTCCTCCGCGTCGCCGCCGTCCCGGCGGCTTGCCCACCTCACACGCCACCTCCTCCTCAGCTCCGGCGAGCTCTCCTCCTCGGTGGGCGCCCCCGCCGCCGCCGCCCGGCCGGCCTACCTCGCCGCCCCCAAGGGCTACGCCGCCGTGCTGGTCTGCCTCTTCGAGGACCCCCACGGCGGCGACCCCCGCGTCATCCTCACCAAGCGCGCCGCCTCCCTCTCCTCCCACTCCGGGGAGGTGTCGCTGCCGGGAGGGAAGGTGGAGGAGGGGGATGCGGATGCGACGGCGACGGCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTCCAAGAACGGACTCCATGTAACTCCTGTAATCGGCATTCTTTCGGATAAAGCTTTATTCAAGCCTGTCTTGAATGAATCTGAAGTGGCAGACATCTTTGATGCACCTCTAGAGATGTTCCTGAAGGATGATAACCGGAAAACACAAGAATCGAATTGGATGGGCATGAATATTCCAGTCCAGTCTTTTGAGTACCAGTCAGAGGACAAAACGTTTGTGATTTGGGGCTTAACGGCACACATTCTGACTCGTGCTGCAGCAGTCGTTTTACCGAGAGAACCATCATTTGTTGAATTTCGACCAAGATATGTGAACTCACCCTCTGGAGATACGAATGAAACAAAACGCTGATGCAATACCATAATCGTCAATATGTAATTCTAGCATTTATCCCCTCCATTCAGAGGCAGCTGCTTGTGCCTGTCTATAGAAAATCAGCTTACTGTACTTTTTGTATGTACACGATAGTCCATAGAATGTTGCATCATCAGCATGTTGGAAAATTTGT]




>consensus_2603#0
GTGGGGGAACCTCGCCGGCGATCCCTCCAAAGCCCAGAAGCGACGCCGCCGCCGCCGCCG
CCAGCCGCCACGTTATCCATGAGGCCTCTCCTCGCCCGCCTCTTCGCCCCGACTTACATT
GCCATGGGTTTCTCCTCCTCCGCGTCGCCGCCGTCCCGGCGGCTTGCCCACCTCACACGC
CACCTCCTCCTCAGCTCCGGCGAGCTCTCCTCCTCGGTGGGCGCCCCCGCCGCCGCCGCC
CGGCCGGCCTACCTCGCCGCCCCCAAGGGCTACGCCGCCGTGCTGGTCTGCCTCTTCGAG
GACCCCCACGGCGGCGACCCCCGCGTCATCCTCACCAAGCGCGCCGCCTCCCTCTCCTCC
CACTCCGGGGAGGTGTCGCTGCCGGGAGGGAAGGTGGAGGAGGGGGATGCGGATGCGACG
GCGACGGCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCCTGCGCTTGTTTCTATT
GTCACAGTTCTTGAGCCCTTCTTGTCCAAGAACGGACTCCATGTAACTCCTGTAATCGGC
ATTCTTTCGGATAAAGCTTTATTCAAGCCTGTCTTGAATGAATCTGAAGTGGCAGACATC
TTTGATGCACCTCTAGAGATGTTCCTGAAGGATGATAACCGGAAAACACAAGAATCGAAT
TGGATGGGCATGAATATTCCAGTCCAGTCTTTTGAGTACCAGTCAGAGGACAAAACGTTT
GTGATTTGGGGCTTAACGGCACACATTCTGACTCGTGCTGCAGCAGTCGTTTTACCGAGA
GAACCATCATTTGTTGAATTTCGACCAAGATATGTGAACTCACCCTCTGGAGATACGAAT
GAAACAAAACGCTGATGCAATACCATAATCGTCAATATGTAATTCTAGCATTTATCCCCT
CCATTCAGAGGCAGCTGCTTGTGCCTGTCTATAGAAAATCAGCTTACTGTACTTTTTGTA
TGTACACGATAGTCCATAGAATGTTGCATCATCAGCATGTTGGAAAATTTGT

consensusID : consensus_2603#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 750
fasta sequence

                              [ATGCGACTGCGACTGCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTCCAAGGTAAACCCATTTTTTTTTCAAGTACTCTTGGCATGGTTGCGAAATCTAGGTAATGTTAGGTTATAGCTTTTACCTATGAATTTTAGTGGTTTGAATGTGCTTTTGTTACATTGCCTGTGTGGGATGGAAGTGAAACCATCGTCGATACAAAGAGGATCGGTAGTTAGTCGATCTAGTGTAAATCCTACTGAATTGCAGGAAGTGGCAGTAGCTGTGCTGCCAGAGCAGCAGCTATATAGTGCATGTTGCAGGTCAAATTCTGTTATAGTATTGAGTTGATATGAGATATTTGTAATATTTTAGCTTTTGAGCCCCAGTCTTAATATGCTGAATGGTTTATGTGTACTGCATCTGCATGCCTCAGATTGTTCAGAGAAACAGAAAGTGTGAAGCATTAGCGAATGAGTCAATCACAGAAGTCATGTGATTTTTTTTACCTTGTTCTTAGCATGTGTTAGATAGTGCTAATAAAAGTAGAAACCAATATGATGATCGATGGATTTTGATTCATTCAGAGACAATAATTCAATAAAGAGATAATGAAAATATGCTTGCTAGTTCATTTGATCTCTGTTTGCCATTTTATCGCTTGTTTGTGTATTGCTGATATGCCAATGCCATATCACATTTCTAGTCCCAAAGCGTTATATAA]

[+] EMBL CB676726             [ATGCGACTGCGACTGCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTCCAAGGTAAACCCATTTTTTTTTCAAGTACTCTTGGCATGGTTGCGAAATCTAGGTAATGTTAGGTTATAGCTTTTACCTATGAATTTTAGTGGTTTGAATGTGCTTTTGTTACATTGCCTGTGTGGGATGGAAGTGAAACCATCGTCGATACAAAGAGGATCGGTAGTTAGTCGATCTAGTGTAAATCCTACTGAATTGCAGGAAGTGGCAGTAGCTGTGCTGCCAGAGCAGCAGCTATATAGTGCATGTTGCAGGTCAAATTCTGTTATAGTATTGAGTTGATATGAGATATTTGTAATATTTTAGCTTTTGAGCCCCAGTCTTAATATGCTGAATGGTTTATGTGTACTGCATCTGCATGCCTCAGATTGTTCAGAGAAACAGAAAGTGTGAAGCATTAGCGAATGAGTCAATCACAGAAGTCATGTGATTTTTTTTACCTTGTTCTTAGCATGTGTTAGATAGTGCTAATAAAAGTAGAAACCAATATGATGATCGATGGATTTTGATTCATTCAGAGACAATAATTCAATAAAGAGATAATGAAAATATGCTTGCTAGTTCATTTGATCTCTGTTTGCCATTTTATCGCTTGTTTGTGTATTGCTGATATGCCAATGCCATATCACATTTCTAGTCCCAAAGCGTTATATAA]




>consensus_2603#1
ATGCGACTGCGACTGCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCCTGCGCTTG
TTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTCCAAGGTAAACCCATTTTTTTTTCAAG
TACTCTTGGCATGGTTGCGAAATCTAGGTAATGTTAGGTTATAGCTTTTACCTATGAATT
TTAGTGGTTTGAATGTGCTTTTGTTACATTGCCTGTGTGGGATGGAAGTGAAACCATCGT
CGATACAAAGAGGATCGGTAGTTAGTCGATCTAGTGTAAATCCTACTGAATTGCAGGAAG
TGGCAGTAGCTGTGCTGCCAGAGCAGCAGCTATATAGTGCATGTTGCAGGTCAAATTCTG
TTATAGTATTGAGTTGATATGAGATATTTGTAATATTTTAGCTTTTGAGCCCCAGTCTTA
ATATGCTGAATGGTTTATGTGTACTGCATCTGCATGCCTCAGATTGTTCAGAGAAACAGA
AAGTGTGAAGCATTAGCGAATGAGTCAATCACAGAAGTCATGTGATTTTTTTTACCTTGT
TCTTAGCATGTGTTAGATAGTGCTAATAAAAGTAGAAACCAATATGATGATCGATGGATT
TTGATTCATTCAGAGACAATAATTCAATAAAGAGATAATGAAAATATGCTTGCTAGTTCA
TTTGATCTCTGTTTGCCATTTTATCGCTTGTTTGTGTATTGCTGATATGCCAATGCCATA
TCACATTTCTAGTCCCAAAGCGTTATATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2603#0      GTGGGGGAACCTCGCCGGCGATCCCTCCAAAGCCCAGAAGCGACGCCGCCGCCGCCGCCG 60
consensus_2603#1      ------------------------------------------------------------
                                                                                  

consensus_2603#0      CCAGCCGCCACGTTATCCATGAGGCCTCTCCTCGCCCGCCTCTTCGCCCCGACTTACATT 120
consensus_2603#1      ------------------ATGCGACTGCGACT-GCTCTGCGGGAGGCGAAGGAGGAGATT 41
                                        *** * *  *  ** ** *  *     **   *    * ***

consensus_2603#0      GCCATGGGTTTCTC-CTCCTCCGCGTCGCCGCCGTCCCGGCGGCTTGCCCACCTCACACG 179
consensus_2603#1      GGGTTGGACCCTGCGCTTGTTTCTATTGTCACAGTTCTTGAGCCCTTCTTGTC---CAAG 98
                      *   ***      * **  *     * * * * ** *  * * * * *    *   ** *

consensus_2603#0      CCACCTCCTCCTCAGCTCCGGCGAGCTCTCCTCCTCGGTGGGCGCCCCCGCCGCCGCCGC 239
consensus_2603#1      GTAAACCCATTTTTTTTTCAA-GTACTCTTGGCATGGTTGCGAAATCTAGGTAATGTTAG 157
                        *   **   *    * *   *  ****   * * * ** *    *  *     *    

consensus_2603#0      CCGGCCGGCCTACCTCGCCGCCCCCAAGGGCT---ACGCCGCCGTGCTGGTCTGCCTCTT 296
consensus_2603#1      GTTATAGCTTTTACCTATGAATTTTAGTGGTTTGAATGTGCTTTTGTTACATTGCCTGTG 217
                            *   *  *           *  ** *   * *      ** *    ***** * 

consensus_2603#0      CGAGGACCCCCACGGCGGCGACCCCCGCGTCATCCTCACCAAGCGCGCCGCCTCCCTCTC 356
consensus_2603#1      TGGG-------ATGGAAGTGAAAC---CATCGTCGATACAAAGAGGATCGGTAGTTAGTC 267
                       * *       * **  * **  *   * ** **   ** *** *   **        **

consensus_2603#0      CTCCCACTCCGGGGAGGTGTCGCTGCCGGGAGGGAAGGTGGAGGAGGGG-GATGCGGATG 415
consensus_2603#1      GATCTAGT----GTAAATCCTACTGAATTGCAGGAAGTGGCAGTAGCTGTGCTGCCAGAG 323
                         * * *    * *  *    ***    *  *****  * ** **  * * ***    *

consensus_2603#0      CGACGGCGACG----GCTCTGCGGGAGGCGAAGGAGGAGATTGGGTTGGACCC-TGCGCT 470
consensus_2603#1      CAGCAGCTATATAGTGCATGTTGCAGGTCAAATTCTGTTATAGTATTGAGTTGATATGAG 383
                      *  * ** *      **     *   * * **    *  ** *  ***      *  *  

consensus_2603#0      -TGTTTCTATTGTCACAGTTCTTGAGCCCT--TCTTGTCCAA--GAACGGACTCCATGTA 525
consensus_2603#1      ATATTTGTAATATTTTAGCTTTTGAGCCCCAGTCTTAATATGCTGAATGGTTTATGTGTA 443
                       * *** ** * *   ** * ********   ****        *** **  *   ****

consensus_2603#0      --ACTCCTGTAATCGGCA--TTCTTTCGGATAAAGCTTTATTCAAGCCTGTCTTGAATGA 581
consensus_2603#1      CTGCATCTGCATGCCTCAGATTGTTCAGAGAAACAGAAAGTGTGAAGCATTAGCGAATGA 503
                         *  *** *  *  **  ** **  *   **       *   *  *  *   ******

consensus_2603#0      ATCTGAAGTGGCAGACATCTTTGATGCACCTCTAGAGATGTTCCTGAAGGATGATAACCG 641
consensus_2603#1      GTC---AATCACAGAAGTCAT-GTGATTTTTTTTACCTTGTTCTTAGCATGTGTTAGATA 559
                       **   * *  ****  ** * *       * *     ***** *      ** **    

consensus_2603#0      GAAAACACAAGAATCGAATTGGATGGGCATGAATATTCCAGTCCAGTCTTTTGAGTACCA 701
consensus_2603#1      GTGCTAATAAAAGTAGAAACCAATATG-ATGATCGATGGATTTTGATTCATTCAGAGACA 618
                      *     * ** * * ***    **  * ****    *  * *    *   ** **   **

consensus_2603#0      GTCAGAGGACAAAACGTTTGTGATTTGGGGCTTAACGGCACACATTCTGACTCGTGCTGC 761
consensus_2603#1      ATAATTCAATAAAGAGATAATGAAAATATGCTTGCTAGTTCA---TTTGATCTCTGTTT- 674
                       * *    * ***  * *  ***      ****    *  **   * ***    ** *  

consensus_2603#0      AGCAGTCGTTTTACCGAGAGAACCATCATTTGTTGAATTTCGACCAAGATATGTGAACTC 821
consensus_2603#1      ----GCCATTTTATCGCTTGT-TTGTGTATTGCTGATATGCCAATGCCATATCACATTTC 729
                          * * ***** **   *     *   *** ***  * * *     ****   *  **

consensus_2603#0      ACCCTCTGGAGATACGAATGAAACAAAACGCTGATGCAATACCATAATCGTCAATATGTA 881
consensus_2603#1      TAGTCCCAAAGCGTTATATAA--------------------------------------- 750
                           *   **      ** *                                       

consensus_2603#0      ATTCTAGCATTTATCCCCTCCATTCAGAGGCAGCTGCTTGTGCCTGTCTATAGAAAATCA 941
consensus_2603#1      ------------------------------------------------------------
                                                                                  

consensus_2603#0      GCTTACTGTACTTTTTGTATGTACACGATAGTCCATAGAATGTTGCATCATCAGCATGTT 1001
consensus_2603#1      ------------------------------------------------------------
                                                                                  

consensus_2603#0      GGAAAATTTGT 1012
consensus_2603#1      -----------