cluster # 2622

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Oryza sativa
cluster # 2622 cluster # 2622 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2622#0 length = 369 sequences # 1

consensus_2622#1 length = 289 sequences # 1

consensusID : consensus_2622#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTCGGATTTTGGGAACCTACTTTTCGTTGAGGAACTCCAAAAAACTGGGTTTTGATTAACCCCTTGCCTTACTTGGGCAAAAACCCCAAAAAAAATCCCCAGCCTTTAACCTTTTTTTTTCTAGGGAAATTTTTTAAATTGGGGGGCCCCCAAAATCCCACTTAACCTTCTTTTAAAAATCCCCCCCAAGGGGTGGGTGGTTTTCTTGGAAAACCTTTTAAATTTTAACCCAAAAACTTTATTAACTTACCTTATTCCCTTTCGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATTCCCAATTTGCAACGGGTTTTTGGGGGCGA]

[+] EMBL CF320922             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTCGGATTTTGGGAACCTACTTTTCGTTGAGGAACTCCAAAAAACTGGGTTTTGATTAACCCCTTGCCTTACTTGGGCAAAAACCCCAAAAAAAATCCCCAGCCTTTAACCTTTTTTTTTCTAGGGAAATTTTTTAAATTGGGGGGCCCCCAAAATCCCACTTAACCTTCTTTTAAAAATCCCCCCCAAGGGGTGGGTGGTTTTCTTGGAAAACCTTTTAAATTTTAACCCAAAAACTTTATTAACTTACCTTATTCCCTTTCGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATTCCCAATTTGCAACGGGTTTTTGGGGGCGA]




>consensus_2622#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTCGGATTTTGGGAACCTACTT
TTCGTTGAGGAACTCCAAAAAACTGGGTTTTGATTAACCCCTTGCCTTACTTGGGCAAAA
ACCCCAAAAAAAATCCCCAGCCTTTAACCTTTTTTTTTCTAGGGAAATTTTTTAAATTGG
GGGGCCCCCAAAATCCCACTTAACCTTCTTTTAAAAATCCCCCCCAAGGGGTGGGTGGTT
TTCTTGGAAAACCTTTTAAATTTTAACCCAAAAACTTTATTAACTTACCTTATTCCCTTT
CGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATTCCCAATTTGCAACGGGTTTT
TGGGGGCGA

consensusID : consensus_2622#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATCCCGGCACAAAAACTTCTTTAACTTACCTCATTCCCTTTCGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATCCACAAAATGCAACGGATTTTTGGGGGCGACCCCTAACCGTTTAGGAAATCATTTTCTAAAGTTTTACCCCCCGAAATGACCCCCCCCCAAATTTTCCAAGGGCTCCCCCAAAATCCGAGTTTTTACCCCTTTCCAAATTTTTTTT]

[+] EMBL CF313043             [TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATCCCGGCACAAAAACTTCTTTAACTTACCTCATTCCCTTTCGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATCCACAAAATGCAACGGATTTTTGGGGGCGACCCCTAACCGTTTAGGAAATCATTTTCTAAAGTTTTACCCCCCGAAATGACCCCCCCCCAAATTTTCCAAGGGCTCCCCCAAAATCCGAGTTTTTACCCCTTTCCAAATTTTTTTT]




>consensus_2622#1
TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
AAAATCCCGGCACAAAAACTTCTTTAACTTACCTCATTCCCTTTCGGAGGAAAGGAAATC
CTTTACAAACTTACCCGGGACATCCACAAAATGCAACGGATTTTTGGGGGCGACCCCTAA
CCGTTTAGGAAATCATTTTCTAAAGTTTTACCCCCCGAAATGACCCCCCCCCAAATTTTC
CAAGGGCTCCCCCAAAATCCGAGTTTTTACCCCTTTCCAAATTTTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2622#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTCGGATTTTGGGAACCTACTT 60
consensus_2622#1      TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTT-----TTTTTTT 55
                      ********************** *********      **    ****       *  **

consensus_2622#0      TTCGTTGAGGAACTCCAAAAAACTGGGTTTTGATTAACCCCTTGCCTTACTTGGGCAA-- 118
consensus_2622#1      TTTTTAAAATCCCGGCACAAAAACTTCTTTAACTTACCTCATTCCCTTTCGGAGGAAAGG 115
                      **  *  *    *  ** ****     ***   *** * * ** **** *   ** **  

consensus_2622#0      AAACCCCAAAAAAAATCCCCAGCCTTTAACCTTTTTTTTTCTAGGGAAATTTTTTAAATT 178
consensus_2622#1      AAATCCTTTACAAACTTACCCGGGAC--ATCCACAAAATGCAACGGA---TTTTTGG--- 167
                      *** **   * *** *  ** *      * *       * * * ***   *****     

consensus_2622#0      GGGGGGCCCCCAAAATCCCACTTAACCTTCTTTTAAAAATCCCCCCCAAGGGGTGGGTGG 238
consensus_2622#1      GGGCGACCCCTAACCGTTTAGGAAATCATTTTCTAAAGTTTTACCCCCCGAAATGA---- 223
                      *** * **** **      *   ** * * ** ****  *   ****  *   **     

consensus_2622#0      TTTTCTTGGAAAACCTTTTAAATTTTAACCCAAAAACT---TTATTAAC--TTACCTTAT 293
consensus_2622#1      -CCCCCCCCCAAATTTTCCAAGGGCTCCCCCAAAATCCGAGTTTTTACCCCTTTCCAAAT 282
                          *     ***  **  **    *  ******* *    ** *** *  ** **  **

consensus_2622#0      TCCCTTTCGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATTCCCAATTTGCAAC 353
consensus_2622#1      TTTTTTT----------------------------------------------------- 289
                      *   ***                                                     

consensus_2622#0      GGGTTTTTGGGGGCGA 369
consensus_2622#1      ----------------