Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2628 cluster # 2628       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2628#0 length = 1436 sequences # 2  

consensusID : consensus_2628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1436
fasta sequence
                              [CTTCCTGGCCGCCGGATTAATCCTCCCATCTCCTCTCGAGGGTCAGGTTCTTAGTGAGAGATGATGAAACTAAAAGGTACAACGCTACATAACTTTAGGGATAGCAATCTAAACTTTGCTGCTGAAGGGATGCCTGCAGTGAAGAAGGATGATGTTAGGACGCATCGGCCAGTTGGTATGAGAAAAGGCAGATGGGTTCTTGGTGACATAACTGAGGTTTTGGATCGTAATTCGTGGAGGCTTGGGAAGATCGCAAAGGTGCTGAAGGATGACTATTTCGTCATCAGGGTAACAGGTTGCATGCAAATGAGAGAATTCCACATATCTTGCTTGAGGTTTCCACATGCCTATCATGGCAAGCAGTCAGCTGTAATAGACAAAGTCAGAAAGCAGAGTGAAAAACAGACCCAACATGTTGATCAAACATTTCATCACTCAAAAATGGTGATGGAAGATGATCATCACTCCAATGAAGCTAATGATCACATCACTAAGAGGCACAAAGCGATCAATCTCTGTCCTTCCTCTAGTGCAAGAAATGTGAAGAAAAAATTAGAACTGACTAGGATGCCACCAGATGATTCAATTCCAGGAGCAAGCAAGAAAAGGAGAGTAGATGCACATGAAGTTCATCGGCAAACCAGGAAACCACAGCCTCTGAAAGTGTCTGCAAAGAATGACATCCACAGAGATCTCTTTTGTAGACCTTCTAGTGAAAGATACAATGATCTTGCCAAGAACAACTTAACAAAGAGAAAACCAGACAGCATAGTTCGTCCTCCATCCCAAATGCCTCTTCAAGTTAGAGAAGAAAACGAGTGTTCTGTGGCTAGTTGTAGTGTGAATTTCTCAGAACACTCTATGAACACTGACACACAATCTGTCGGAGTCAGGAACAGCTTCCCTGATGATGCCATGTCTTCATGTCCATCCATGCTTAGGCAGGAGAGTGACAATGTCCATGGCTGTGATTTCAAAATGGATGTCCATGAGCTGGAGCTACAAGCATATCAATCAACAGTGAGAGCTTTTTATGCATTGGGACCACTGACATGGGAGCAAGAGTCACTTTTGACAAATTTGCGCCTTTCGCTTAACATCACAAATGAGGAACACTTGCTTCAGTTGAGACACCTATTATTTTCTTGAACCATTGAATTTTCTCCAATATCAGATAAGTTGAGAACTGAAGGCTATACATCTAACGGTTTTCGCAAGAACAGTGTGCTGTTCTGAGCTCGGTGTATCTCTTCGTCTCCATCTTGTAGATATCTCTGGAGCTTACTTCCTCCTTTTTCCACCTTTGATGGTGTTGTAAATATAAAAACAGTTGTGGAAATTTTACTGGTAGTTTATTGTATTTCACCAAACTTTTGTTGTTAGAAGTAAATGAGAATTTGATGGTTTTTACTTCCAAAAAAAAAAAAAAAAAAAGA]

[+] EMBL CB677635             [CTTCCTGGCCGCCGGATTAATCCTCCCATCTCCTCTCGAGGGTCAGGTTCTTAGTGAGAGATGATGAAACTAAAAGGTACAACGCTACATAACTTTAGGGATAGCAATCTAAACTTTGCTGCTGAAGGGATGCCTGCAGTGAAGAAGGATGATGTTAGGACGCATCGGCCAGTTGGTATGAGAAAAGGCAGATGGGTTCTTGGTGACATAACTGAGGTTTTGGATCGTAATTCGTGGAGGCTTGGGAAGATCGCAAAGGTGCTGAAGGATGACTATTTCGTCATCAGGGTAACAGGTTGCATGCAAATGAGAGAATTCCACATATCTTGCTTGAGGTTTCCACATGCCTATCATGGCAAGCAGTCAGCTGTAATAGACAAAGTCAGAAAGCAGAGTGAAAAACAGACCCAACATGTTGATCAAACATTTCATCACTCAAAAATGGTGATGGAAGATGATCATCACTCCAATGAAGCTAATGATCACATCACTAAGAGGCACAAAGCGATCAATCTCTGTCCTTCCTCTAGTGCAAGAAATGTGAAGAAAAAATTAGAACTGACTAGGATGCCACCAGATGATTCAATTCCAGGAGCAAGCAAGAAAAGGAGAGTAGATGCACATGAAGTTCATCGGCAAACCAGGAAACCACAGCCTCTGAAAGTGTCTGCAAAGAATGACATCCACAGAGATCTCTTTTGTAGACCTTCTAGTGAAAGATACAATGATCTTGCCAAGAACAACTTAACAAAGAGAAAACCAGACAGCATAGTTCGTCCTCCATCCCAAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB677636             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACAATGATCTTGCCAAGAACAACTTAACAAAGAGAAAACCAGACAGCATAGTTCGTCCTCCATCCCAAATGCCTCTTCAAGTTAGAGAAGAAAACGAGTGTTCTGTGGCTAGTTGTAGTGTGAATTTCTCAGAACACTCTATGAACACTGACACACAATCTGTCGGAGTCAGGAACAGCTTCCCTGATGATGCCATGTCTTCATGTCCATCCATGCTTAGGCAGGAGAGTGACAATGTCCATGGCTGTGATTTCAAAATGGATGTCCATGAGCTGGAGCTACAAGCATATCAATCAACAGTGAGAGCTTTTTATGCATTGGGACCACTGACATGGGAGCAAGAGTCACTTTTGACAAATTTGCGCCTTTCGCTTAACATCACAAATGAGGAACACTTGCTTCAGTTGAGACACCTATTATTTTCTTGAACCATTGAATTTTCTCCAATATCAGATAAGTTGAGAACTGAAGGCTATACATCTAACGGTTTTCGCAAGAACAGTGTGCTGTTCTGAGCTCGGTGTATCTCTTCGTCTCCATCTTGTAGATATCTCTGGAGCTTACTTCCTCCTTTTTCCACCTTTGATGGTGTTGTAAATATAAAAACAGTTGTGGAAATTTTACTGGTAGTTTATTGTATTTCACCAAACTTTTGTTGTTAGAAGTAAATGAGAATTTGATGGTTTTTACTTCCAAAAAAAAAAAAAAAAAAAGA]


>consensus_2628#0 CTTCCTGGCCGCCGGATTAATCCTCCCATCTCCTCTCGAGGGTCAGGTTCTTAGTGAGAG ATGATGAAACTAAAAGGTACAACGCTACATAACTTTAGGGATAGCAATCTAAACTTTGCT GCTGAAGGGATGCCTGCAGTGAAGAAGGATGATGTTAGGACGCATCGGCCAGTTGGTATG AGAAAAGGCAGATGGGTTCTTGGTGACATAACTGAGGTTTTGGATCGTAATTCGTGGAGG CTTGGGAAGATCGCAAAGGTGCTGAAGGATGACTATTTCGTCATCAGGGTAACAGGTTGC ATGCAAATGAGAGAATTCCACATATCTTGCTTGAGGTTTCCACATGCCTATCATGGCAAG CAGTCAGCTGTAATAGACAAAGTCAGAAAGCAGAGTGAAAAACAGACCCAACATGTTGAT CAAACATTTCATCACTCAAAAATGGTGATGGAAGATGATCATCACTCCAATGAAGCTAAT GATCACATCACTAAGAGGCACAAAGCGATCAATCTCTGTCCTTCCTCTAGTGCAAGAAAT GTGAAGAAAAAATTAGAACTGACTAGGATGCCACCAGATGATTCAATTCCAGGAGCAAGC AAGAAAAGGAGAGTAGATGCACATGAAGTTCATCGGCAAACCAGGAAACCACAGCCTCTG AAAGTGTCTGCAAAGAATGACATCCACAGAGATCTCTTTTGTAGACCTTCTAGTGAAAGA TACAATGATCTTGCCAAGAACAACTTAACAAAGAGAAAACCAGACAGCATAGTTCGTCCT CCATCCCAAATGCCTCTTCAAGTTAGAGAAGAAAACGAGTGTTCTGTGGCTAGTTGTAGT GTGAATTTCTCAGAACACTCTATGAACACTGACACACAATCTGTCGGAGTCAGGAACAGC TTCCCTGATGATGCCATGTCTTCATGTCCATCCATGCTTAGGCAGGAGAGTGACAATGTC CATGGCTGTGATTTCAAAATGGATGTCCATGAGCTGGAGCTACAAGCATATCAATCAACA GTGAGAGCTTTTTATGCATTGGGACCACTGACATGGGAGCAAGAGTCACTTTTGACAAAT TTGCGCCTTTCGCTTAACATCACAAATGAGGAACACTTGCTTCAGTTGAGACACCTATTA TTTTCTTGAACCATTGAATTTTCTCCAATATCAGATAAGTTGAGAACTGAAGGCTATACA TCTAACGGTTTTCGCAAGAACAGTGTGCTGTTCTGAGCTCGGTGTATCTCTTCGTCTCCA TCTTGTAGATATCTCTGGAGCTTACTTCCTCCTTTTTCCACCTTTGATGGTGTTGTAAAT ATAAAAACAGTTGTGGAAATTTTACTGGTAGTTTATTGTATTTCACCAAACTTTTGTTGT TAGAAGTAAATGAGAATTTGATGGTTTTTACTTCCAAAAAAAAAAAAAAAAAAAGA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)