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Oryza sativa
cluster # 2641 cluster # 2641       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2641#0 length = 1721 sequences # 1  
consensus_2641#1 length = 677 sequences # 1  

consensusID : consensus_2641#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1721
fasta sequence
                              [CCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCGGCCGGCCGCCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCTATGGCGGCGGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGTGCTCTTCGAGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTAAATAATGGACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCCATACAAGCAAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTACATCCAGTTTCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGATGTGGACCTACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCAGGAATGAGCACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCTGGTTTTAAACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTACTGGGCTAGGAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCATTATGCTCTTGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTGGATAGGTTGCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAGGTAGCATGTTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAGGACCTCAACACAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCAGACAAAAGTTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTCTGGGAGCAAGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGATGTTGTGATGTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCAAGAAATTGTGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGCTGGTGCTGCGCAGTCATCTTTGTCGGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACAAGGGAAGACGAAACAATGAAAGAAACTTTTAGCAACTAATTAAGTTCAGTTCAACTGGGCAGAATATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGTGACAATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATTGAAGAAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCT]

[+] EMBL AK067069             [CCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCGGCCGGCCGCCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCTATGGCGGCGGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGTGCTCTTCGAGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTAAATAATGGACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCCATACAAGCAAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTACATCCAGTTTCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGATGTGGACCTACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCAGGAATGAGCACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCTGGTTTTAAACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTACTGGGCTAGGAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCATTATGCTCTTGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTGGATAGGTTGCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAGGTAGCATGTTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAGGACCTCAACACAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCAGACAAAAGTTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTCTGGGAGCAAGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGATGTTGTGATGTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCAAGAAATTGTGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGCTGGTGCTGCGCAGTCATCTTTGTCGGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACAAGGGAAGACGAAACAATGAAAGAAACTTTTAGCAACTAATTAAGTTCAGTTCAACTGGGCAGAATATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGTGACAATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATTGAAGAAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCT]


>consensus_2641#0 CCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCGGCCGGCCG CCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCTATGGCGGC GGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGTGCTCTTCG AGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTAAATAATGG ACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCCATACAAGC AAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTACATCCAGTT TCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGATGTGGACCT ACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCAGGAATGAG CACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCTGGTTTTAA ACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTACTGGGCTAG GAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCATTATGCTCT TGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTGGATAGGTT GCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAGGTAGCATG TTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAGGACCTCAA CACAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCAGACAAAAG TTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTCTGGGAGCA AGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGATGTTGTGAT GTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCAAGAAATTG TGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGGCTCGCAAG GCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACCAGGGCTGA TAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCA GATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGCTGGTGCTGCGCAGTCATCTTTGTC GGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACAAGGGAAGA CGAAACAATGAAAGAAACTTTTAGCAACTAATTAAGTTCAGTTCAACTGGGCAGAATATC ATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGTTGTTGTAAGT GTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGTGACA ATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATTGAAGAAGT ACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAAACGTTCTA GCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCT



consensusID : consensus_2641#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence
                              [GAACCCTGATGTTGTGATGTTGGGTGATATGTTCNTAAAGAGAGAGCTAAAGCACTAAGGAGGCTGCAAGAAATTGGATGGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTGTGCTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCAGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTGTCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTATCTGTACCAAATGTGAGTTAAGCATGGTGCTGCGCAGTCATCTTTGTTGGAAACCATGTTCTCATGTAAGAACAATCTTTGGAGAACAAGTCCCTAGGGAAGATGAAACAATGAAAGAAACTTTTAGCTAGACTAATTTTGTTCAGTTCAACTGGACAGAATATCATTGCCATCCTGTTTGCATGAGATGAGGGCGTTAACCTTGTTAACCCTGTGTGTTGTAAGTGTGTAAACCTTTTTCAGATTTTCAGTGACAATTCGTTCGAATGTACCCAAAGATATGGATATCCCGAGCTGATCAGCCCATTGAAGAAGTACAATATGCTTTGGTAGTTCCTTGTAATGTATCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTTCGGATAAAATAAAAAAAAAAAAAAAA]

[-] EMBL CA763235             [GAACCCTGATGTTGTGATGTTGGGTGATATGTTCNTAAAGAGAGAGCTAAAGCACTAAGGAGGCTGCAAGAAATTGGATGGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTGTGCTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCAGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTGTCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTATCTGTACCAAATGTGAGTTAAGCATGGTGCTGCGCAGTCATCTTTGTTGGAAACCATGTTCTCATGTAAGAACAATCTTTGGAGAACAAGTCCCTAGGGAAGATGAAACAATGAAAGAAACTTTTAGCTAGACTAATTTTGTTCAGTTCAACTGGACAGAATATCATTGCCATCCTGTTTGCATGAGATGAGGGCGTTAACCTTGTTAACCCTGTGTGTTGTAAGTGTGTAAACCTTTTTCAGATTTTCAGTGACAATTCGTTCGAATGTACCCAAAGATATGGATATCCCGAGCTGATCAGCCCATTGAAGAAGTACAATATGCTTTGGTAGTTCCTTGTAATGTATCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTTCGGATAAAATAAAAAAAAAAAAAAAA]


>consensus_2641#1 GAACCCTGATGTTGTGATGTTGGGTGATATGTTCNTAAAGAGAGAGCTAAAGCACTAAGG AGGCTGCAAGAAATTGGATGGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTGTG CTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCAGCGATCACCATTGG TGAGACCAGGGCTGATAGTATTTTGTCCTTGAAAATTAATGCAAGATGTGGGGAGATACT GCCCAGAATACTTCAGATGGGAAGTCTATCTGTACCAAATGTGAGTTAAGCATGGTGCTG CGCAGTCATCTTTGTTGGAAACCATGTTCTCATGTAAGAACAATCTTTGGAGAACAAGTC CCTAGGGAAGATGAAACAATGAAAGAAACTTTTAGCTAGACTAATTTTGTTCAGTTCAAC TGGACAGAATATCATTGCCATCCTGTTTGCATGAGATGAGGGCGTTAACCTTGTTAACCC TGTGTGTTGTAAGTGTGTAAACCTTTTTCAGATTTTCAGTGACAATTCGTTCGAATGTAC CCAAAGATATGGATATCCCGAGCTGATCAGCCCATTGAAGAAGTACAATATGCTTTGGTA GTTCCTTGTAATGTATCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTTCGGATAAAA TAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2641#0      CCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCGGCCGGCCG 60
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      CCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCTATGGCGGC 120
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      GGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGTGCTCTTCG 180
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      AGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTAAATAATGG 240
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      ACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCCATACAAGC 300
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      AAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTACATCCAGTT 360
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      TCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGATGTGGACCT 420
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      ACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCAGGAATGAG 480
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      CACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCTGGTTTTAA 540
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      ACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTACTGGGCTAG 600
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      GAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCATTATGCTCT 660
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      TGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTGGATAGGTT 720
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      GCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAGGTAGCATG 780
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      TTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAGGACCTCAA 840
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      CACAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCAGACAAAAG 900
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      TTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTCTGGGAGCA 960
consensus_2641#1      ------------------------------------------------------------
                                                                                  

consensus_2641#0      AGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGATGTTGTGAT 1020
consensus_2641#1      ------------------------------------------GAACCCTGATGTTGTGAT 18
                                                                *** **************

consensus_2641#0      GTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCAAGAAATTG 1080
consensus_2641#1      GTTGGGTGATA-TGTTCNTAAAGAGAGAGCT-AAAGCACTAAGGAGGCTGCAAGAAATTG 76
                      *** ******* ***** * *********** ****************************

consensus_2641#0      TGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGGCTCGCAAG 1140
consensus_2641#1      GATGGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTGTGCTTT-AGGCTCGCAAG 135
                          ************************************* ****** ***********

consensus_2641#0      GCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACCAGGGCTGA 1200
consensus_2641#1      GCTTGCACATGAAGCGAATGCTCCAATTGCAGCGATCACCATTGGTGAGACCAGGGCTGA 195
                      ****************************** *****************************

consensus_2641#0      TAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCA 1260
consensus_2641#1      TAGTATTTTGTCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCA 255
                      ********* **************************************************

consensus_2641#0      GATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGC-TGGTGCTGCGCAGTCATCTTTGT 1319
consensus_2641#1      GATGGGAAGTCTATCTGTACCAAATGTGAGTTAAGCATGGTGCTGCGCAGTCATCTTTGT 315
                      ************* ********** ** ******** ***********************

consensus_2641#0      CGGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACAAGGGAAG 1379
consensus_2641#1      TGGAAACCATGTTCTCATGTAAGAACAAT-CTTTGGAGAA----CAAGTCCCTAGGGAAG 370
                       ************  ************** **********    ****** * *******

consensus_2641#0      ACGAAACAATGAAAGAAACTTTTAGC--AACTAATTAAGTTCAGTTCAACTGGGCAGAAT 1437
consensus_2641#1      ATGAAACAATGAAAGAAACTTTTAGCTAGACTAATTTTGTTCAGTTCAACTGGACAGAAT 430
                      * ************************   *******  *************** ******

consensus_2641#0      ATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGT-TGTTGT 1496
consensus_2641#1      ATCATTGCCATCCTGTTTGCATGAGATGAGGGCGTTAACCTTGTTAACCCTGTGTGTTGT 490
                      *****  ************************* ******************** ******

consensus_2641#0      AAGTGTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGT 1556
consensus_2641#1      AAGTGTGTAAACCTT-------------------TTTCAGAT-----------TTTCAGT 520
                      ***************                   **  *  *           *******

consensus_2641#0      GACAATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATTGAAG 1616
consensus_2641#1      GACAATTCGTTCGAATGTACCCAAAGATATGGATATCCCGAGCTGATCAGCCCATTGAAG 580
                      ******** *** *****  ********************* ********* ********

consensus_2641#0      AAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAAACGT 1676
consensus_2641#1      AAGTACAATATGCTTTGGTAGTTCCTTGTAATGTATCATTAAGCAGAAGTTGAAAAACGT 640
                      ***************** **************** *************************

consensus_2641#0      TCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCT 1721
consensus_2641#1      TCTAGCTGGTTCGGATAAAATAAAAAAAAAAAAAAAA-------- 677
                      ********** ******     *   *   *    *         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)