These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1721 fasta sequence [CCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCGGCCGGCCGCCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCTATGGCGGCGGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGTGCTCTTCGAGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTAAATAATGGACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCCATACAAGCAAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTACATCCAGTTTCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGATGTGGACCTACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCAGGAATGAGCACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCTGGTTTTAAACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTACTGGGCTAGGAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCATTATGCTCTTGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTGGATAGGTTGCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAGGTAGCATGTTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAGGACCTCAACACAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCAGACAAAAGTTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTCTGGGAGCAAGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGATGTTGTGATGTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCAAGAAATTGTGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGCTGGTGCTGCGCAGTCATCTTTGTCGGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACAAGGGAAGACGAAACAATGAAAGAAACTTTTAGCAACTAATTAAGTTCAGTTCAACTGGGCAGAATATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGTGACAATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATTGAAGAAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCT] [+] EMBL AK067069 [CCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCGGCCGGCCGCCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCTATGGCGGCGGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGTGCTCTTCGAGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTAAATAATGGACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCCATACAAGCAAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTACATCCAGTTTCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGATGTGGACCTACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCAGGAATGAGCACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCTGGTTTTAAACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTACTGGGCTAGGAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCATTATGCTCTTGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTGGATAGGTTGCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAGGTAGCATGTTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAGGACCTCAACACAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCAGACAAAAGTTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTCTGGGAGCAAGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGATGTTGTGATGTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCAAGAAATTGTGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGCTGGTGCTGCGCAGTCATCTTTGTCGGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACAAGGGAAGACGAAACAATGAAAGAAACTTTTAGCAACTAATTAAGTTCAGTTCAACTGGGCAGAATATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGTGACAATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATTGAAGAAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCT] consensusID : consensus_2641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [GAACCCTGATGTTGTGATGTTGGGTGATATGTTCNTAAAGAGAGAGCTAAAGCACTAAGGAGGCTGCAAGAAATTGGATGGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTGTGCTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCAGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTGTCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTATCTGTACCAAATGTGAGTTAAGCATGGTGCTGCGCAGTCATCTTTGTTGGAAACCATGTTCTCATGTAAGAACAATCTTTGGAGAACAAGTCCCTAGGGAAGATGAAACAATGAAAGAAACTTTTAGCTAGACTAATTTTGTTCAGTTCAACTGGACAGAATATCATTGCCATCCTGTTTGCATGAGATGAGGGCGTTAACCTTGTTAACCCTGTGTGTTGTAAGTGTGTAAACCTTTTTCAGATTTTCAGTGACAATTCGTTCGAATGTACCCAAAGATATGGATATCCCGAGCTGATCAGCCCATTGAAGAAGTACAATATGCTTTGGTAGTTCCTTGTAATGTATCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTTCGGATAAAATAAAAAAAAAAAAAAAA] [-] EMBL CA763235 [GAACCCTGATGTTGTGATGTTGGGTGATATGTTCNTAAAGAGAGAGCTAAAGCACTAAGGAGGCTGCAAGAAATTGGATGGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTGTGCTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCAGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTGTCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTATCTGTACCAAATGTGAGTTAAGCATGGTGCTGCGCAGTCATCTTTGTTGGAAACCATGTTCTCATGTAAGAACAATCTTTGGAGAACAAGTCCCTAGGGAAGATGAAACAATGAAAGAAACTTTTAGCTAGACTAATTTTGTTCAGTTCAACTGGACAGAATATCATTGCCATCCTGTTTGCATGAGATGAGGGCGTTAACCTTGTTAACCCTGTGTGTTGTAAGTGTGTAAACCTTTTTCAGATTTTCAGTGACAATTCGTTCGAATGTACCCAAAGATATGGATATCCCGAGCTGATCAGCCCATTGAAGAAGTACAATATGCTTTGGTAGTTCCTTGTAATGTATCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTTCGGATAAAATAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2641#0 CCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCGGCCGGCCG 60 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 CCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCTATGGCGGC 120 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 GGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGTGCTCTTCG 180 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 AGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTAAATAATGG 240 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 ACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCCATACAAGC 300 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 AAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTACATCCAGTT 360 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 TCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGATGTGGACCT 420 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 ACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCAGGAATGAG 480 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 CACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCTGGTTTTAA 540 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 ACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTACTGGGCTAG 600 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 GAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCATTATGCTCT 660 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 TGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTGGATAGGTT 720 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 GCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAGGTAGCATG 780 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 TTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAGGACCTCAA 840 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 CACAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCAGACAAAAG 900 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 TTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTCTGGGAGCA 960 consensus_2641#1 ------------------------------------------------------------ consensus_2641#0 AGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGATGTTGTGAT 1020 consensus_2641#1 ------------------------------------------GAACCCTGATGTTGTGAT 18 *** ************** consensus_2641#0 GTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCAAGAAATTG 1080 consensus_2641#1 GTTGGGTGATA-TGTTCNTAAAGAGAGAGCT-AAAGCACTAAGGAGGCTGCAAGAAATTG 76 *** ******* ***** * *********** **************************** consensus_2641#0 TGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGGCTCGCAAG 1140 consensus_2641#1 GATGGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTGTGCTTT-AGGCTCGCAAG 135 ************************************* ****** *********** consensus_2641#0 GCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACCAGGGCTGA 1200 consensus_2641#1 GCTTGCACATGAAGCGAATGCTCCAATTGCAGCGATCACCATTGGTGAGACCAGGGCTGA 195 ****************************** ***************************** consensus_2641#0 TAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCA 1260 consensus_2641#1 TAGTATTTTGTCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCA 255 ********* ************************************************** consensus_2641#0 GATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGC-TGGTGCTGCGCAGTCATCTTTGT 1319 consensus_2641#1 GATGGGAAGTCTATCTGTACCAAATGTGAGTTAAGCATGGTGCTGCGCAGTCATCTTTGT 315 ************* ********** ** ******** *********************** consensus_2641#0 CGGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACAAGGGAAG 1379 consensus_2641#1 TGGAAACCATGTTCTCATGTAAGAACAAT-CTTTGGAGAA----CAAGTCCCTAGGGAAG 370 ************ ************** ********** ****** * ******* consensus_2641#0 ACGAAACAATGAAAGAAACTTTTAGC--AACTAATTAAGTTCAGTTCAACTGGGCAGAAT 1437 consensus_2641#1 ATGAAACAATGAAAGAAACTTTTAGCTAGACTAATTTTGTTCAGTTCAACTGGACAGAAT 430 * ************************ ******* *************** ****** consensus_2641#0 ATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGT-TGTTGT 1496 consensus_2641#1 ATCATTGCCATCCTGTTTGCATGAGATGAGGGCGTTAACCTTGTTAACCCTGTGTGTTGT 490 ***** ************************* ******************** ****** consensus_2641#0 AAGTGTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGT 1556 consensus_2641#1 AAGTGTGTAAACCTT-------------------TTTCAGAT-----------TTTCAGT 520 *************** ** * * ******* consensus_2641#0 GACAATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATTGAAG 1616 consensus_2641#1 GACAATTCGTTCGAATGTACCCAAAGATATGGATATCCCGAGCTGATCAGCCCATTGAAG 580 ******** *** ***** ********************* ********* ******** consensus_2641#0 AAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAAACGT 1676 consensus_2641#1 AAGTACAATATGCTTTGGTAGTTCCTTGTAATGTATCATTAAGCAGAAGTTGAAAAACGT 640 ***************** **************** ************************* consensus_2641#0 TCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCT 1721 consensus_2641#1 TCTAGCTGGTTCGGATAAAATAAAAAAAAAAAAAAAA-------- 677 ********** ****** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||