These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1341 fasta sequence [ACCCCTCCTTCCCCTTCCTCTCAAGCCGGCGCGGCCGACGAGCCCGCGGCAAAACCACGCAAAAAATCTGCCAAAAGAAGATCCCCCAAATCCGCCACCGCGCTCACGCCGGCGCAGCCATGGCGACCTCCTTCTCTTTCGGCTCTTCCGCCGCGTCGGGATCCACCGGCTCCTCCCCATTCTCCTTCTCCACCGGCACCGCCCCATCAGCCTTCTCCTTCTCTCAGCCCGCCGCCGCACCCGGTCTGTTCGGGGCCGCCGCGTCCGCTGCTTCCGCGCCAAGCCTTTTCTCTGGCGCCGCCACGGGCTTTGGCTTTGGCTCAGCTGCGTCGGGCACCACCACTGCCGCGACCGCTGCTGCCTCGACACCGTCTTTCGGCTTCGGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGATGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATTGCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGCTGAGTTTGAGACTGCTGATAGTATGACACCATTTGATGTTGCTGTCCGGATACTGGATAATCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACAGAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTTAAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAACATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTCCACTGTTCCTCTCATTCAAGTACATGATGTACCGAACTGATGTTATTCGTTGGGATTTTAACTGCTGATGTTAACAATGCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCACTTTGGTCTTTGGACGAGGAAACAAGAGGCTTTGCGAGATACCGTTCATTATTGGTTCCAGGTGTGTTCAGATCTGTTGAGCTGAAAAGTAGATGCTATATGATGCGTTGGGTGGGCTAAGTACCTGGCTACCTGCATCAATTGAGCTACGCCTTATGAGCTTCTTACCAGGGACCAGCGGATATCTTGAGCCTTTTCTTGCGATCCTGTAATCTCAAATCGCTGTCCTCCAGTTGCACTAGAAAGCTTCGGGGTCCTGTAAGATTGCACGATTTGCATTTCTAAACTACATGCTATATGTTCGCCTAACTACTTGTGCATGGCGCGTGTTCATGATCTGCCATTATCAGATCAAGATTGCGCCTATACAAGAAAGATAATATAAT] [+] EMBL AK064176 [ACCCCTCCTTCCCCTTCCTCTCAAGCCGGCGCGGCCGACGAGCCCGCGGCAAAACCACGCAAAAAATCTGCCAAAAGAAGATCCCCCAAATCCGCCACCGCGCTCACGCCGGCGCAGCCATGGCGACCTCCTTCTCTTTCGGCTCTTCCGCCGCGTCGGGATCCACCGGCTCCTCCCCATTCTCCTTCTCCACCGGCACCGCCCCATCAGCCTTCTCCTTCTCTCAGCCCGCCGCCGCACCCGGTCTGTTCGGGGCCGCCGCGTCCGCTGCTTCCGCGCCAAGCCTTTTCTCTGGCGCCGCCACGGGCTTTGGCTTTGGCTCAGCTGCGTCGGGCACCACCACTGCCGCGACCGCTGCTGCCTCGACACCGTCTTTCGGCTTCGGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGATGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATTGCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGCTGAGTTTGAGACTGCTGATAGTATGACACCATTTGATGTTGCTGTCCGGATACTGGATAATCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACAGAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTTAAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAACATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTCCACTGTTCCTCTCATTCAAGTACATGATGTACCGAACTGATGTTATTCGTTGGGATTTTAACTGCTGATGTTAACAATGCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCACTTTGGTCTTTGGACGAGGAAACAAGAGGCTTTGCGAGATACCGTTCATTATTGGTTCCAGGTGTGTTCAGATCTGTTGAGCTGAAAAGTAGATGCTATATGATGCGTTGGGTGGGCTAAGTACCTGGCTACCTGCATCAATTGAGCTACGCCTTATGAGCTTCTTACCAGGGACCAGCGGATATCTTGAGCCTTTTCTTGCGATCCTGTAATCTCAAATCGCTGTCCTCCAGTTGCACTAGAAAGCTTCGGGGTCCTGTAAGATTGCACGATTTGCATTTCTAAACTACATGCTATATGTTCGCCTAACTACTTGTGCATGGCGCGTGTTCATGATCTGCCATTATCAGATCAAGATTGCGCCTATACAAGAAAGATAATATAAT] consensusID : consensus_2663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CTAAGGTTGTTAAACACAACCAAGCTTGGAGAGGCAACTTGAGTTAATAAAAACTCCCCAGAAAGAGGTTGACAAGGCTCTGCAGAGCATGGAGGAGGAAGCAGAGCGGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGATGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATTGCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGCTGAGTTTGAGACTGCTGATAGTATGGCACCATTTGATGTTGCTGTCCGGATACTGGATAATCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACAGAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTTAAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAACATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTTCACTGTTCCTCTCATTCAAGTACACATGTACCGAACTGATGTTATTTGTTGGGATTTTAACTGCTGATGTTAACAATGCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCAAAAAAAAAA] [-] EMBL CA763346 [CTAAGGTTGTTAAACACAACCAAGCTTGGAGAGGCAACTTGAGTTAATAAAAACTCCCCAGAAAGAGGTTGACAAGGCTCTGCAGAGCATGGAGGAGGAAGCAGAGCGGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGATGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATTGCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGCTGAGTTTGAGACTGCTGATAGTATGGCACCATTTGATGTTGCTGTCCGGATACTGGATAATCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACAGAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTTAAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAACATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTTCACTGTTCCTCTCATTCAAGTACACATGTACCGAACTGATGTTATTTGTTGGGATTTTAACTGCTGATGTTAACAATGCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2663#0 ACCCCTCCTTCCCCTTCCTCTCAAGCCGGCGCGGCCGACGAGCCCGCGGCAAAACCACGC 60 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 AAAAAATCTGCCAAAAGAAGATCCCCCAAATCCGCCACCGCGCTCACGCCGGCGCAGCCA 120 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 TGGCGACCTCCTTCTCTTTCGGCTCTTCCGCCGCGTCGGGATCCACCGGCTCCTCCCCAT 180 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 TCTCCTTCTCCACCGGCACCGCCCCATCAGCCTTCTCCTTCTCTCAGCCCGCCGCCGCAC 240 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 CCGGTCTGTTCGGGGCCGCCGCGTCCGCTGCTTCCGCGCCAAGCCTTTTCTCTGGCGCCG 300 consensus_2663#1 ------------------CTAAGGTTGTTAAACACA-ACCAAGCTT-------GGAGAGG 34 * * * * * ****** * ** * * consensus_2663#0 CCACGGGCTTTGGCTTTGGCTCAGCTGCGTCGGGCACCACCACTGCCGCGACCGCTGCTG 360 consensus_2663#1 CAACTTGAGTTAATAAAAACTCCCCAGAAAGAGGT--TGACAAGGCT----CTGCAGA-G 87 * ** * ** *** * * ** ** ** * ** * * consensus_2663#0 CCTCGACACCGTCTTTCGGCTTCGGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGA 420 consensus_2663#1 CATGGAGGAGGAAGCAGAGC---GGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGA 144 * * ** * ** ************************************* consensus_2663#0 TGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATT 480 consensus_2663#1 TGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATT 204 ************************************************************ consensus_2663#0 GCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGC 540 consensus_2663#1 GCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGC 264 ************************************************************ consensus_2663#0 TGAGTTTGAGACTGCTGATAGTATGACACCATTTGATGTTGCTGTCCGGATACTGGATAA 600 consensus_2663#1 TGAGTTTGAGACTGCTGATAGTATGGCACCATTTGATGTTGCTGTCCGGATACTGGATAA 324 ************************* ********************************** consensus_2663#0 TCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACA 660 consensus_2663#1 TCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACA 384 ************************************************************ consensus_2663#0 GAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTT 720 consensus_2663#1 GAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTT 444 ************************************************************ consensus_2663#0 AAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAAC 780 consensus_2663#1 AAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAAC 504 ************************************************************ consensus_2663#0 ATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTCCACTGTTCCTCTCATTCA 840 consensus_2663#1 ATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTTCACTGTTCCTCTCATTCA 564 ***************************************** ****************** consensus_2663#0 AGTACATGATGTACCGAACTGATGTTATTCGTTGGGATTTTAACTGCTGATGTTAACAAT 900 consensus_2663#1 AGTACAC-ATGTACCGAACTGATGTTATTTGTTGGGATTTTAACTGCTGATGTTAACAAT 623 ****** ********************* ****************************** consensus_2663#0 GCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCACTTTG 960 consensus_2663#1 GCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCAAAAAA 683 ******************************************************* consensus_2663#0 GTCTTTGGACGAGGAAACAAGAGGCTTTGCGAGATACCGTTCATTATTGGTTCCAGGTGT 1020 consensus_2663#1 AAAA-------------------------------------------------------- 687 consensus_2663#0 GTTCAGATCTGTTGAGCTGAAAAGTAGATGCTATATGATGCGTTGGGTGGGCTAAGTACC 1080 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 TGGCTACCTGCATCAATTGAGCTACGCCTTATGAGCTTCTTACCAGGGACCAGCGGATAT 1140 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 CTTGAGCCTTTTCTTGCGATCCTGTAATCTCAAATCGCTGTCCTCCAGTTGCACTAGAAA 1200 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 GCTTCGGGGTCCTGTAAGATTGCACGATTTGCATTTCTAAACTACATGCTATATGTTCGC 1260 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 CTAACTACTTGTGCATGGCGCGTGTTCATGATCTGCCATTATCAGATCAAGATTGCGCCT 1320 consensus_2663#1 ------------------------------------------------------------ consensus_2663#0 ATACAAGAAAGATAATATAAT 1341 consensus_2663#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||