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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1020 fasta sequence
[CTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATAGTGTTTTGTTGTACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTATGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGTTGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAACATTGGGAAGATCACATTAGACACAGAATCATCTCATGGACTTACCAGCAATGGTGTGACGACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAAGTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAAGCTCTGCTGAAACTAGTTCACTTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCATGATTGTTGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACTGGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGC]
[+] EMBL AK109693 [CTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATAGTGTTTTGTTGTACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTATGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGTTGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAACATTGGGAAGATCACATTAGACACAGAATCATCTCATGGACTTACCAGCAATGGTGTGACGACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAAGTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAAGCTCTGCTGAAACTAGTTCACTTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCATGATTGTTGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACTGGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGC]
consensusID : consensus_2673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence
[CACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATATGTGTTTTGTTGTACTAAACCTATTTCTGCCGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGACATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAAAACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTGCCTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAAACCCAGAACAGACCATTGATGTCTTCAGTTG]
[+] EMBL CB680321 [CACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATATGTGTTTTGTTGTACTAAACCTATTTCTGCCGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGACATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAAAACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTGCCTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAAACCCAGAACAGACCATTGATGTCTTCAGTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2673#0 CTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATA-GTGTTTTGTT 59
consensus_2673#1 -CACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATATGTGTTTTGTT 59
*********************************************** **********
consensus_2673#0 GTACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGT 119
consensus_2673#1 GTACTAAACCTATTTCTGCCGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGT 119
********* ********* ****************************************
consensus_2673#0 TTGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTA 179
consensus_2673#1 TTGACATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTA 179
**** *******************************************************
consensus_2673#0 GGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAA 239
consensus_2673#1 GGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAA 239
************************************************************
consensus_2673#0 AAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTA 299
consensus_2673#1 AAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTA 299
************************************************************
consensus_2673#0 GAAAGGTCATCGGAACGTA----------------------------------------- 318
consensus_2673#1 GAAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAA 359
*******************
consensus_2673#0 ------------------------------------TGGCTATATGTCTCCAGAGTATGC 342
consensus_2673#1 AACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGC 419
************************
consensus_2673#0 AATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGA 402
consensus_2673#1 AATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGA 479
************************************************************
consensus_2673#0 GATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCT 462
consensus_2673#1 GATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCT 539
************************************************************
consensus_2673#0 CAGATATG---------------------------------------------------- 470
consensus_2673#1 CAGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTG 599
********
consensus_2673#0 -----------------------------CATGGATGTTGTGGAAAGAAGGTAAGAGTGT 501
consensus_2673#1 CCTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGT 659
*******************************
consensus_2673#0 GGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGT 561
consensus_2673#1 GGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGT 719
************************************************************
consensus_2673#0 ACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGT 621
consensus_2673#1 ACACGTCGCTCTGTTGTGCGTTGAAGTGGAAACCCAGAACAGACCATTGATGTCTTCAGT 779
******************************* ** *************************
consensus_2673#0 TGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAA 681
consensus_2673#1 TG---------------------------------------------------------- 781
**
consensus_2673#0 CATTGGGAAGATCACATTAGACACAGAATCATCTCATGGACTTACCAGCAATGGTGTGAC 741
consensus_2673#1 ------------------------------------------------------------
consensus_2673#0 GACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAA 801
consensus_2673#1 ------------------------------------------------------------
consensus_2673#0 GTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAAGCTCTGCTGAAACTAGTTCAC 861
consensus_2673#1 ------------------------------------------------------------
consensus_2673#0 TTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCATGATTGT 921
consensus_2673#1 ------------------------------------------------------------
consensus_2673#0 TGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACT 981
consensus_2673#1 ------------------------------------------------------------
consensus_2673#0 GGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGC 1020
consensus_2673#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||