cluster # 2682

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2682 cluster # 2682 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2682#0 length = 570 sequences # 1

consensus_2682#1 length = 532 sequences # 1

consensusID : consensus_2682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence

                              [TTTTTTTTTTTTTGAGATAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCCTAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTCTTGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCGTCCAGAGGTTCTCCTCAAGTAGTAAGTGCAGCTTGTAAATACAATGCCCCCAATAGCACCAAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATTTGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGGCGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAGATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGCACCACTCTTACAGTAACCCATTTTGCTATGCTTGATCAGAATGGTTGGGTCAGAGCAATCAGAGCAGCATACAAATTCTTTGCCAAAATCCAGCTTGTTCCCCCTTGTCTGTCCT]

[+] EMBL CA763388             [TTTTTTTTTTTTTGAGATAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCCTAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTCTTGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCGTCCAGAGGTTCTCCTCAAGTAGTAAGTGCAGCTTGTAAATACAATGCCCCCAATAGCACCAAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATTTGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGGCGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAGATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGCACCACTCTTACAGTAACCCATTTTGCTATGCTTGATCAGAATGGTTGGGTCAGAGCAATCAGAGCAGCATACAAATTCTTTGCCAAAATCCAGCTTGTTCCCCCTTGTCTGTCCT]




>consensus_2682#0
TTTTTTTTTTTTTGAGATAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCC
TAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTCT
TGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCG
TCCAGAGGTTCTCCTCAAGTAGTAAGTGCAGCTTGTAAATACAATGCCCCCAATAGCACC
AAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATT
TGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGG
CGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAG
ATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGCACCACTCTTACAGTAACCCATTTTG
CTATGCTTGATCAGAATGGTTGGGTCAGAGCAATCAGAGCAGCATACAAATTCTTTGCCA
AAATCCAGCTTGTTCCCCCTTGTCTGTCCT

consensusID : consensus_2682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence

                              [GATAAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCCTAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTATTGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCGTCCAGAGGTTCTCCTCAAGTAGTAAGTGTAGCTTGTAAATACAATGCCCCCAATAGCACCAAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATTTGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGGCATTTCATCTGCTGAACAGCTAGCATCATCTACAGGATAATGTTTGATTGTGGCATCAGATAAATTTCCATAACAAGCAACATCACGATACCGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAGATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGC]

[-] EMBL AK062532             [GATAAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCCTAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTATTGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCGTCCAGAGGTTCTCCTCAAGTAGTAAGTGTAGCTTGTAAATACAATGCCCCCAATAGCACCAAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATTTGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGGCATTTCATCTGCTGAACAGCTAGCATCATCTACAGGATAATGTTTGATTGTGGCATCAGATAAATTTCCATAACAAGCAACATCACGATACCGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAGATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGC]




>consensus_2682#1
GATAAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCCTAAAAATAATGAAC
AAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTATTGCAAGTAAATGGT
CCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCGTCCAGAGGTTCTCC
TCAAGTAGTAAGTGTAGCTTGTAAATACAATGCCCCCAATAGCACCAAGCCCTAGAAGAA
GAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATTTGTTTGCTCTGCCA
TGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGGCATTTCATCTGCTG
AACAGCTAGCATCATCTACAGGATAATGTTTGATTGTGGCATCAGATAAATTTCCATAAC
AAGCAACATCACGATACCGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTC
CAGCAACCCAATGATAGATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2682#0      TTTTTTTTTTTTTGAGATAAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCC 60
consensus_2682#1      -------------GATA-AAAAAACAACCATTTCCAGCAAGTCAGCAACTAATACAGGCC 46
                                   ** * ******************************************

consensus_2682#0      TAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTCT 120
consensus_2682#1      TAAAAATAATGAACAAACTTGCTCCTCGGATTTGGAATGTTAACTTTAGCATTCATTTAT 106
                      ********************************************************** *

consensus_2682#0      TGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCG 180
consensus_2682#1      TGCAAGTAAATGGTCCTCTCAAGAATACGCTTCCATCATGACATACACAAAACCATTTCG 166
                      ************************************************************

consensus_2682#0      TCCAGAGGTTCTCCTCAAGTAGTAAGTGCAGCTTGTAAATACAATGCCCCCAATAGCACC 240
consensus_2682#1      TCCAGAGGTTCTCCTCAAGTAGTAAGTGTAGCTTGTAAATACAATGCCCCCAATAGCACC 226
                      **************************** *******************************

consensus_2682#0      AAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATT 300
consensus_2682#1      AAGCCCTAGAAGAAGAATAAGTGCTACCAACCAACCAGACATTCCATTCTTCCTAGAATT 286
                      ************************************************************

consensus_2682#0      TGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGG 360
consensus_2682#1      TGTTTGCTCTGCCATGTCGACACCACAGCTCTGCTCATTGCAAGCTTCCTGTCTTGCAGG 346
                      ************************************************************

consensus_2682#0      CGCACACCACCATCGCATGGCGAGGAGCACTTCATCCATGGTCCAGCAACCCAATGATAG 420
consensus_2682#1      CAT-TTCATCTGCTGAACAGCTAGCA-----TCATCTACAGGATAATGTTTGATTGTGGC 400
                      *     *  *    * *  ** ** *     ***** *  *   *       * **    

consensus_2682#0      ATTTCGTGTGGTTTTAACTGCATTGATAGCTCAGCACCACTC-TTACAGTAACCCATTTT 479
consensus_2682#1      ATCAGATAAATTTCCATAACAAGCAACATCACGATACCGCACACCACCATCGCATGGCGA 460
                      **    *    **  *     *   * * * *   *** * *   **  *  *       

consensus_2682#0      GCTATGCTTGATCAGAATGGTTGGGTCAGAGCAATCAGAGCAGCATACAAATTCTTTGCC 539
consensus_2682#1      GGAGCACTTCATCC--ATGGTCCAG-CAACCCAATGATAG-ATTTCGTGTGGTTTTAACT 516
                      *     *** ***   *****   * **   **** * ** *          * **  * 

consensus_2682#0      AAAATC-CAGCTTGTTCCCCCTTGTCTGTCCT 570
consensus_2682#1      GCATTGATAGCTCAGC---------------- 532
                        * *   ****