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Oryza sativa
cluster # 2689 cluster # 2689       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2689#0 length = 1273 sequences # 1  
consensus_2689#1 length = 1001 sequences # 1  

consensusID : consensus_2689#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1273
fasta sequence
                              [TCCGCTCGTGTCGTGTGAAGCGGTGAACTTTAGCCGACTCCTGACTAGCGACTACCCTCCCACTCTCTCAGCTCGCTTCCCTTCCTCGCCTCGCCGGCCAAGAACCACCGCAAGATTCGCCATGGCCAGATCGCCGGAGCCGCCGCGCTACTACGCCGCCGCGGGCTACCACCGCCCCTCGCCCTTCTCCTCCGTGGCGGCGTCCTGCGTCGTGGCGGCGCTGTTCATCCTGCTCGCCGCGGGCGGCGCCGCGGCTGCGCTGTTCCTGCTCTACCGGCCGCAGGCGCCGGCCATCGCCGTGACGGCCGTGCAGCTCCCCTCCTTCGCCTCCCGCAACGGCACCGTCGCCTTCACGTTCCAGCAGCTCGCCTCCGTCCGCAACCCCAACCGCTCCCCGCTCGCGCACTACGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGGTCGGCTCGATGTACATCCCCGCCGGCCAGATCGACGGGGGGCGCACGCAGTACATGGCCACCAGCTTCACCGTCCCGGCCTTCGCCGTCACCTCCTCCGCCACCGCCGCCGCTTCCTCCTCCCCGGCGCAGACAATCACCGTCCCCGCCTCCGGCCCCTCACCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAAGAACAGCCGCCGCCGCAGCAGCAGCAGGTGGCGGCGCTGCCGGTGATGGAGGTGGACTCGCTGCTGGTGGTGAAAGGGAAGGTGACCATCCTCCGGGTGTTCACCCACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGGCGTCTCGCCGGCGGACGGCCGCGTGCTCGGATTCCGGTGCTGACCAAGACCAGGCCAAGATCTGACTCTCCTCCATTTGCCCATTTTGGGGTTAATCGGTGGTGTCCCCTGTCAATCTCTTCAGTGAATTCGTGTCAAATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTCTTCTTCTTTCTGTGATGATTTTCTGAGTGTGTATTTTTCTCTTGAATCTTCTCATCTTTGGTAGATTTCTGCAGCCTTCTTGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCAGGCCAAAGAAAGATTTGGTTCTTGAGATGTTCAGTTGGACAATTTGTTTTGCTAAGCAACCATAGTGAGGAAATTAAAGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGACTTGTAATCTTATCCATTCTTGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGTTAGATGCTTATGA]

[+] EMBL AK073471             [TCCGCTCGTGTCGTGTGAAGCGGTGAACTTTAGCCGACTCCTGACTAGCGACTACCCTCCCACTCTCTCAGCTCGCTTCCCTTCCTCGCCTCGCCGGCCAAGAACCACCGCAAGATTCGCCATGGCCAGATCGCCGGAGCCGCCGCGCTACTACGCCGCCGCGGGCTACCACCGCCCCTCGCCCTTCTCCTCCGTGGCGGCGTCCTGCGTCGTGGCGGCGCTGTTCATCCTGCTCGCCGCGGGCGGCGCCGCGGCTGCGCTGTTCCTGCTCTACCGGCCGCAGGCGCCGGCCATCGCCGTGACGGCCGTGCAGCTCCCCTCCTTCGCCTCCCGCAACGGCACCGTCGCCTTCACGTTCCAGCAGCTCGCCTCCGTCCGCAACCCCAACCGCTCCCCGCTCGCGCACTACGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGGTCGGCTCGATGTACATCCCCGCCGGCCAGATCGACGGGGGGCGCACGCAGTACATGGCCACCAGCTTCACCGTCCCGGCCTTCGCCGTCACCTCCTCCGCCACCGCCGCCGCTTCCTCCTCCCCGGCGCAGACAATCACCGTCCCCGCCTCCGGCCCCTCACCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAAGAACAGCCGCCGCCGCAGCAGCAGCAGGTGGCGGCGCTGCCGGTGATGGAGGTGGACTCGCTGCTGGTGGTGAAAGGGAAGGTGACCATCCTCCGGGTGTTCACCCACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGGCGTCTCGCCGGCGGACGGCCGCGTGCTCGGATTCCGGTGCTGACCAAGACCAGGCCAAGATCTGACTCTCCTCCATTTGCCCATTTTGGGGTTAATCGGTGGTGTCCCCTGTCAATCTCTTCAGTGAATTCGTGTCAAATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTCTTCTTCTTTCTGTGATGATTTTCTGAGTGTGTATTTTTCTCTTGAATCTTCTCATCTTTGGTAGATTTCTGCAGCCTTCTTGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCAGGCCAAAGAAAGATTTGGTTCTTGAGATGTTCAGTTGGACAATTTGTTTTGCTAAGCAACCATAGTGAGGAAATTAAAGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGACTTGTAATCTTATCCATTCTTGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGTTAGATGCTTATGA]


>consensus_2689#0 TCCGCTCGTGTCGTGTGAAGCGGTGAACTTTAGCCGACTCCTGACTAGCGACTACCCTCC CACTCTCTCAGCTCGCTTCCCTTCCTCGCCTCGCCGGCCAAGAACCACCGCAAGATTCGC CATGGCCAGATCGCCGGAGCCGCCGCGCTACTACGCCGCCGCGGGCTACCACCGCCCCTC GCCCTTCTCCTCCGTGGCGGCGTCCTGCGTCGTGGCGGCGCTGTTCATCCTGCTCGCCGC GGGCGGCGCCGCGGCTGCGCTGTTCCTGCTCTACCGGCCGCAGGCGCCGGCCATCGCCGT GACGGCCGTGCAGCTCCCCTCCTTCGCCTCCCGCAACGGCACCGTCGCCTTCACGTTCCA GCAGCTCGCCTCCGTCCGCAACCCCAACCGCTCCCCGCTCGCGCACTACGACAGCTCGCT CCGCGTCGCCTACGCCGGCGGCGAGGTCGGCTCGATGTACATCCCCGCCGGCCAGATCGA CGGGGGGCGCACGCAGTACATGGCCACCAGCTTCACCGTCCCGGCCTTCGCCGTCACCTC CTCCGCCACCGCCGCCGCTTCCTCCTCCCCGGCGCAGACAATCACCGTCCCCGCCTCCGG CCCCTCACCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAAGAACAGCCGCCGCCGCAGCA GCAGCAGGTGGCGGCGCTGCCGGTGATGGAGGTGGACTCGCTGCTGGTGGTGAAAGGGAA GGTGACCATCCTCCGGGTGTTCACCCACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGG CGTCTCGCCGGCGGACGGCCGCGTGCTCGGATTCCGGTGCTGACCAAGACCAGGCCAAGA TCTGACTCTCCTCCATTTGCCCATTTTGGGGTTAATCGGTGGTGTCCCCTGTCAATCTCT TCAGTGAATTCGTGTCAAATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTCTT CTTCTTTCTGTGATGATTTTCTGAGTGTGTATTTTTCTCTTGAATCTTCTCATCTTTGGT AGATTTCTGCAGCCTTCTTGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCA GGCCAAAGAAAGATTTGGTTCTTGAGATGTTCAGTTGGACAATTTGTTTTGCTAAGCAAC CATAGTGAGGAAATTAAAGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGACTT GTAATCTTATCCATTCTTGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGT TAGATGCTTATGA



consensusID : consensus_2689#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1001
fasta sequence
                              [TTCCCACTCACCACGCATGCAGCCGCCGCCAAGAACCCGCGATCCGGCCATCGCCATCGCCGGCGACGGCGCGGCGCGGCGAGGTCCCCCGCCGATGCAGCCGCCCGGGCCGCCGCCGGTAAGGCATGGTCCGCCGCCGGTGCGGCAGCAGCACGGCTACTACTACGAGGAGGAGCAGAGGCCGCTGCACCTGCACGTGAGGACGGCGAGGTCGTCGTCGTCGGCGCTGGCGTCGTGCCTCGTGGCGGCGGCGTTCCTGGCGCTGGCGGTGGGCGGGGCGGGGGCGGCGCTGTTCGTGCTGTTCCGGCCGCGCCCGCCCGACATCGCGGTGGCGGCGGTGCGGCTGCCGGCGTTCGCGTCCGGCCCGAACGGCACGGTGGCGTTCACGTTCGAGCAGACGGCCGCCGTGCGCAACCCCAACCGCGCGCCGCTCGCGCACTTCGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGCTCGGCTCCGTCTACATCCCCGCCGGCCTCATCGACGGTGGCCGCACCAAGGACATGTCCGCCAGCTTCGCCGTCCCGGCGTTCGCCGCGGCCACCCCGCCGTCGCTGCCTCAGGAGCAGATGGCCGCCGCCGCCGCCGCCTCGGCGCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGTGATGGAGGTCGACTCGCTGCTGGTGGTCAAGGGGAGGGTGACCGTGCTGCGTGTGCTGACGCACCACGTCGAGGCGGCCAAGGTGTGCCGCGTCGGCGTCTCGCCGGTGGACGGCAAGGTGCTCGGCTTCCGGTGCTGAACACCACTATGGATTTGGATTTGGATGAAATCCAAATTAAGCCGAAATTTTGCGGGAAAGAATGTAATTTAATTTAAATTCTGCAGAAACCAAGCATTCCCGTTAAGTTTCTGAGCTCCAAACTGGTGGTGTAATGGTAGATGATGATATACTATGTAATATGTTCCATTCTTAAGACACGGTGAAATACCAGAGTATCAGTAGC]

[+] EMBL AK108936             [TTCCCACTCACCACGCATGCAGCCGCCGCCAAGAACCCGCGATCCGGCCATCGCCATCGCCGGCGACGGCGCGGCGCGGCGAGGTCCCCCGCCGATGCAGCCGCCCGGGCCGCCGCCGGTAAGGCATGGTCCGCCGCCGGTGCGGCAGCAGCACGGCTACTACTACGAGGAGGAGCAGAGGCCGCTGCACCTGCACGTGAGGACGGCGAGGTCGTCGTCGTCGGCGCTGGCGTCGTGCCTCGTGGCGGCGGCGTTCCTGGCGCTGGCGGTGGGCGGGGCGGGGGCGGCGCTGTTCGTGCTGTTCCGGCCGCGCCCGCCCGACATCGCGGTGGCGGCGGTGCGGCTGCCGGCGTTCGCGTCCGGCCCGAACGGCACGGTGGCGTTCACGTTCGAGCAGACGGCCGCCGTGCGCAACCCCAACCGCGCGCCGCTCGCGCACTTCGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGCTCGGCTCCGTCTACATCCCCGCCGGCCTCATCGACGGTGGCCGCACCAAGGACATGTCCGCCAGCTTCGCCGTCCCGGCGTTCGCCGCGGCCACCCCGCCGTCGCTGCCTCAGGAGCAGATGGCCGCCGCCGCCGCCGCCTCGGCGCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGTGATGGAGGTCGACTCGCTGCTGGTGGTCAAGGGGAGGGTGACCGTGCTGCGTGTGCTGACGCACCACGTCGAGGCGGCCAAGGTGTGCCGCGTCGGCGTCTCGCCGGTGGACGGCAAGGTGCTCGGCTTCCGGTGCTGAACACCACTATGGATTTGGATTTGGATGAAATCCAAATTAAGCCGAAATTTTGCGGGAAAGAATGTAATTTAATTTAAATTCTGCAGAAACCAAGCATTCCCGTTAAGTTTCTGAGCTCCAAACTGGTGGTGTAATGGTAGATGATGATATACTATGTAATATGTTCCATTCTTAAGACACGGTGAAATACCAGAGTATCAGTAGC]


>consensus_2689#1 TTCCCACTCACCACGCATGCAGCCGCCGCCAAGAACCCGCGATCCGGCCATCGCCATCGC CGGCGACGGCGCGGCGCGGCGAGGTCCCCCGCCGATGCAGCCGCCCGGGCCGCCGCCGGT AAGGCATGGTCCGCCGCCGGTGCGGCAGCAGCACGGCTACTACTACGAGGAGGAGCAGAG GCCGCTGCACCTGCACGTGAGGACGGCGAGGTCGTCGTCGTCGGCGCTGGCGTCGTGCCT CGTGGCGGCGGCGTTCCTGGCGCTGGCGGTGGGCGGGGCGGGGGCGGCGCTGTTCGTGCT GTTCCGGCCGCGCCCGCCCGACATCGCGGTGGCGGCGGTGCGGCTGCCGGCGTTCGCGTC CGGCCCGAACGGCACGGTGGCGTTCACGTTCGAGCAGACGGCCGCCGTGCGCAACCCCAA CCGCGCGCCGCTCGCGCACTTCGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGCT CGGCTCCGTCTACATCCCCGCCGGCCTCATCGACGGTGGCCGCACCAAGGACATGTCCGC CAGCTTCGCCGTCCCGGCGTTCGCCGCGGCCACCCCGCCGTCGCTGCCTCAGGAGCAGAT GGCCGCCGCCGCCGCCGCCTCGGCGCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGTGAT GGAGGTCGACTCGCTGCTGGTGGTCAAGGGGAGGGTGACCGTGCTGCGTGTGCTGACGCA CCACGTCGAGGCGGCCAAGGTGTGCCGCGTCGGCGTCTCGCCGGTGGACGGCAAGGTGCT CGGCTTCCGGTGCTGAACACCACTATGGATTTGGATTTGGATGAAATCCAAATTAAGCCG AAATTTTGCGGGAAAGAATGTAATTTAATTTAAATTCTGCAGAAACCAAGCATTCCCGTT AAGTTTCTGAGCTCCAAACTGGTGGTGTAATGGTAGATGATGATATACTATGTAATATGT TCCATTCTTAAGACACGGTGAAATACCAGAGTATCAGTAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2689#0      --TCCGCTCGTGTCGTGTGAAGCGGTGAACTTTAGCCGACT-CCTGACTAGCGACTACCC 57
consensus_2689#1      TTCCCACTCACCACGCATGCAGCCGCCGCCAAGAACCCGCGATCCGGCCATCGCCATCGC 60
                         ** ***    **  ** *** *    *   * **  *   * * * * ** *  * *

consensus_2689#0      TCCCACTCTCTCAGCTCGCTTCCCTTCCTCGCCTCGCCGGCCAA--GAACCACCGCAAGA 115
consensus_2689#1      CGGCGACGGCGCGGCGCGGCGAGGTCCCCCGCCGATGCAGCCGCCCGGGCCGCCGCC-GG 119
                         *     * * ** **      * ** ****    * ***    *  ** ****  * 

consensus_2689#0      TTCGCCATGGCCAGATCGCCGGAGCCGCCGC------GCTACTACGCCGCCGCGGGCTA- 168
consensus_2689#1      TAAGGCATGGTCCG-CCGCCGGTGCGGCAGCAGCACGGCTACTACTACGAGGAGGAGCAG 178
                      *  * ***** * *  ****** ** ** **      ********  **  * **   * 

consensus_2689#0      ---CCACCGCCCCTC-----------------GCCCTTCTCCTCCGTGGCGGCGTCCTGC 208
consensus_2689#1      AGGCCGCTGCACCTGCACGTGAGGACGGCGAGGTCGTCGTCGTCGGCGCTGGCGTCGTGC 238
                         ** * ** ***                  * * *  ** ** * *  ****** ***

consensus_2689#0      GTCGTGGCGGCGCTGTTCATCCTGCTCGCCGCGGGCGGCGCCGCGGCTGCGCTGTTCCTG 268
consensus_2689#1      CTCGTGGCGGCGGCGTTCCTGGCGCTGGCGGTGGGCGGGGCGGGGGCGGCGCTGTTCGTG 298
                       ***********  **** *   *** ** * ****** ** * *** ********* **

consensus_2689#0      CTCTACCGGCCGCAGGCGCCGGCCATCGCCGTGACGGCCGTGCAGCTCCCCTCCTTCGCC 328
consensus_2689#1      CTGTTCCGGCCGCGCCCGCCCGACATCGCGGTGGCGGCGGTGCGGCTGCCGGCGTTCGCG 358
                      ** * ********   **** * ****** *** **** **** *** **  * ***** 

consensus_2689#0      TCCCGC---AACGGCACCGTCGCCTTCACGTTCCAGCAGCTCGCCTCCGTCCGCAACCCC 385
consensus_2689#1      TCCGGCCCGAACGGCACGGTGGCGTTCACGTTCGAGCAGACGGCCGCCGTGCGCAACCCC 418
                      *** **   ******** ** ** ********* *****   *** **** *********

consensus_2689#0      AACCGCTCCCCGCTCGCGCACTACGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAG 445
consensus_2689#1      AACCGCGCGCCGCTCGCGCACTTCGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAG 478
                      ****** * ************* *************************************

consensus_2689#0      GTCGGCTCGATGTACATCCCCGCCGGCCAGATCGACGGGGGGCGCACGCAGTACATGGCC 505
consensus_2689#1      CTCGGCTCCGTCTACATCCCCGCCGGCCTCATCGACGGTGGCCGCACCAAGGACATGTCC 538
                       *******  * ****************  ******** ** *****  ** ***** **

consensus_2689#0      ACCAGCTTCACCGTCCCGGCCTTCGCCGTCACCTCCTCCGCCACCGCCGCCGCTTCCTCC 565
consensus_2689#1      GCCAGCTTCGCCGTCCCGGCGTTCGCCGCGGCCACC-------CCGCCGTCGCTGCCTCA 591
                       ******** ********** *******   ** **       ****** **** **** 

consensus_2689#0      TCCCCGGCGCAGACAATCACCGTCCCCGCCTCCGGCCCCTCACCGGCGGCGGTGGGCGCG 625
consensus_2689#1      -----GGAGCAGATGGCCGCCGCCGCCGCCGCC--------------------------- 619
                           ** *****    * *** * ***** **                           

consensus_2689#0      GTGGCGCTGCAGCAAGAACAGCCGCCGCCGCAGCAGCAGCAGGTGGCGGCGCTGCCGGTG 685
consensus_2689#1      ---------------------TCGGCGCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGTG 658
                                            ** *** *********** ** *******  * *****

consensus_2689#0      ATGGAGGTGGACTCGCTGCTGGTGGTGAAAGGGAAGGTGACCATCCTCCGGGTGTTCACC 745
consensus_2689#1      ATGGAGGTCGACTCGCTGCTGGTGGTCAAGGGGAGGGTGACCGTGCTGCGTGTGCTGACG 718
                      ******** ***************** ** **** ******* * ** ** *** * ** 

consensus_2689#0      CACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGGCGTCTCGCCGGCGGACGGCCGCGTG 805
consensus_2689#1      CACCACGTCGAGGCGGCCAAGGTGTGCCGCGTCGGCGTCTCGCCGGTGGACGGCAAGGTG 778
                      **********  ** *************** *************** *******   ***

consensus_2689#0      CTCGGATTCCGGTGCTGACCAAGACCA--GGCCAAGATCTGACTCTCCTCCA--TTTGCC 861
consensus_2689#1      CTCGGCTTCCGGTGCTGAACACCACTATGGATTTGGATTTGGATGAAATCCAAATTAAGC 838
                      ***** ************ **  ** *  *     *** **  *    ****  **   *

consensus_2689#0      C---ATTTTGGGGTTAATCGGTGGTGTCCCCTGTCAATCTCTTCAGTGAATTCGTGTCAA 918
consensus_2689#1      CGAAATTTTGCGGGAAA--GAATGTAATTTAATTTAAATTCTGCAGAAA-------CCAA 889
                      *   ****** **  **  *   **        * **  *** ***  *        ***

consensus_2689#0      ATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTCTTCTTCTTTCTGTGATGATT 978
consensus_2689#1      GCATTCCCGTTAAGTT--TCTGAGCTCCAAACTGGTGGTGTAATGGTAG--ATGATGATA 945
                         *    * ******  * ***  *  **  * *   * *  *  *     ******* 

consensus_2689#0      TTCTGAGTG-TGTATTTTTCTCTTGAATCTTCTCATCTTTGGTAGATTTCTGCAGCCTTC 1037
consensus_2689#1      TACTATGTAATATGTTCCATTCTTAAGACACGGTGAAATACCAGAGTATCAGTAGC---- 1001
                      * **  **  * * **    **** *  *         *       * ** * ***    

consensus_2689#0      TTGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCAGGCCAAAGAAAGATTTG 1097
consensus_2689#1      ------------------------------------------------------------
                                                                                  

consensus_2689#0      GTTCTTGAGATGTTCAGTTGGACAATTTGTTTTGCTAAGCAACCATAGTGAGGAAATTAA 1157
consensus_2689#1      ------------------------------------------------------------
                                                                                  

consensus_2689#0      AGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGACTTGTAATCTTATCCATTCT 1217
consensus_2689#1      ------------------------------------------------------------
                                                                                  

consensus_2689#0      TGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGTTAGATGCTTATGA 1273
consensus_2689#1      --------------------------------------------------------
                                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)