These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence [GTCGGCCTCGCTGAAGTGAACCCGAACGGCTGTACGCCCTGTACCCCAATCCAAACCATTCTGCTGTTCTCTTCCCGTCGCCATGGCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCTCTCGTTCCCCAGAGCGCTCCCCTCTCACTCCAACCTCGCCGCCACCGCCACCGCCGGCGCAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTCCGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCTCCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTGCGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGACGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCCGGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCTCCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACATCAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTGGCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGAGTCCGTGGTCCATTTCGGCATGACACATCTCGGGTAGTATCATCCAATTTGTAATGCCTTCGCCTTAGCTTCTTAAAGCTTGTGCTAATTCATCAAGCATTTCTATCTTTTGTCAATTATTAGAA] [+] EMBL AK108151 [GTCGGCCTCGCTGAAGTGAACCCGAACGGCTGTACGCCCTGTACCCCAATCCAAACCATTCTGCTGTTCTCTTCCCGTCGCCATGGCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCTCTCGTTCCCCAGAGCGCTCCCCTCTCACTCCAACCTCGCCGCCACCGCCACCGCCGGCGCAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTCCGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCTCCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTGCGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGACGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCCGGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCTCCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACATCAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTGGCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGAGTCCGTGGTCCATTTCGGCATGACACATCTCGGGTAGTATCATCCAATTTGTAATGCCTTCGCCTTAGCTTCTTAAAGCTTGTGCTAATTCATCAAGCATTTCTATCTTTTGTCAATTATTAGAA] consensusID : consensus_2691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [GCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCTCTCGTTCCCCAGAGCGCTCCCCTCTCCACTCCAACCTCGCCGCCACCGCCACCGCCGGCGCAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTCCGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCTCCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTGCGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGACGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCCGGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCTCCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACATCAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTGGCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGGTGCTGCACGGGAAGCTGCTATTCTGGGATTTCACATTACTCCATTGTTCTCATACTATG] [+] EMBL CB681308 [GCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCTCTCGTTCCCCAGAGCGCTCCCCTCTCCACTCCAACCTCGCCGCCACCGCCACCGCCGGCGCAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTCCGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCTCCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTGCGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGACGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCCGGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCTCCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACATCAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTGGCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGGTGCTGCACGGGAAGCTGCTATTCTGGGATTTCACATTACTCCATTGTTCTCATACTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2691#0 GTCGGCCTCGCTGAAGTGAACCCGAACGGCTGTACGCCCTGTACCCCAATCCAAACCATT 60 consensus_2691#1 ------------------------------------------------------------ consensus_2691#0 CTGCTGTTCTCTTCCCGTCGCCATGGCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCT 120 consensus_2691#1 -------------------------GCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCT 35 *********************************** consensus_2691#0 CTCGTTCCCCAGAGCGCTCCCCTCTC-ACTCCAACCTCGCCGCCACCGCCACCGCCGGCG 179 consensus_2691#1 CTCGTTCCCCAGAGCGCTCCCCTCTCCACTCCAACCTCGCCGCCACCGCCACCGCCGGCG 95 ************************** ********************************* consensus_2691#0 CAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTC 239 consensus_2691#1 CAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTC 155 ************************************************************ consensus_2691#0 CGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCT 299 consensus_2691#1 CGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCT 215 ************************************************************ consensus_2691#0 CCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTG 359 consensus_2691#1 CCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTG 275 ************************************************************ consensus_2691#0 CGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGA 419 consensus_2691#1 CGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGA 335 ************************************************************ consensus_2691#0 CGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCC 479 consensus_2691#1 CGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCC 395 ************************************************************ consensus_2691#0 GGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCT 539 consensus_2691#1 GGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCT 455 ************************************************************ consensus_2691#0 CCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACAT 599 consensus_2691#1 CCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACAT 515 ************************************************************ consensus_2691#0 CAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTG 659 consensus_2691#1 CAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTG 575 ************************************************************ consensus_2691#0 GCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGAGTCCGTGGTCCATTTCGGCATGACAC 719 consensus_2691#1 GCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTG-----GTGCTGCA---CGGGAAGCTGC 627 ********************************* *** * ** *** * * * consensus_2691#0 ATCTCGGGTAGTATCATCCAATTTGTAATGCCTTCGCCTTAGCTTCTTAAAGCTTGTGCT 779 consensus_2691#1 TATTCTGG-GATTTCACATTACTC-CATTGTTCTCATACTATG----------------- 668 ** ** * *** * * * ** ** ** consensus_2691#0 AATTCATCAAGCATTTCTATCTTTTGTCAATTATTAGAA 818 consensus_2691#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||