cluster # 2697

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2697 cluster # 2697 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2697#0 length = 632 sequences # 1

consensus_2697#1 length = 117 sequences # 1

consensusID : consensus_2697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [TTTTTTTTTTTCACAGAATCCCAATATCAAATATTAACATAGGATGTCGTACATATATAAACTCATTTTCCACAGTAAAGGAAAAGAAAAGGAGGTACATTTCTATTGCAAATTGTGTTGCTAAAAATAGGAACGGCAGCTGTGCACCAGATCAGAACTAAAAAAAACAAATCTAGAGACCGGTGATGCATTTGCCATTGCAAGTGCGGTATCAGCCAAAGGATGTCCAGTCCAGGGTACTACGTGTGAACCTGAGGGAGAAAGGCCCCACCATAGTTGGACGCTCACATCGCAGGACCCAAGCAAACAGTGGTTAAAAGGGCATGGCCCCTGCCCTTGTGCGGCGCACGGTGGAAGAAGCACCAGTGCACCATGCAATGTCTCACGGTGGTGGCAATGGAGATCTCTTTTGCAAATATGAGGAAACAACTGGAAAGTACAAGAGCACCTCAACAAACCGTCGCTCATAGGAGCTATTTTACCTGGTGCAGGTTAGCAGGTACAGTTGCACGAAGATAAAAATGGCTGCAGATGCAGTTCAGGTGTGTTTGGTCATACATCTGTCCACCATGATTCCAGGGGCACTTGCAGATGAAGCTTGCCATGTATGTTGACAGATGCACCCCCCTTGT]

[+] EMBL CA763398             [TTTTTTTTTTTCACAGAATCCCAATATCAAATATTAACATAGGATGTCGTACATATATAAACTCATTTTCCACAGTAAAGGAAAAGAAAAGGAGGTACATTTCTATTGCAAATTGTGTTGCTAAAAATAGGAACGGCAGCTGTGCACCAGATCAGAACTAAAAAAAACAAATCTAGAGACCGGTGATGCATTTGCCATTGCAAGTGCGGTATCAGCCAAAGGATGTCCAGTCCAGGGTACTACGTGTGAACCTGAGGGAGAAAGGCCCCACCATAGTTGGACGCTCACATCGCAGGACCCAAGCAAACAGTGGTTAAAAGGGCATGGCCCCTGCCCTTGTGCGGCGCACGGTGGAAGAAGCACCAGTGCACCATGCAATGTCTCACGGTGGTGGCAATGGAGATCTCTTTTGCAAATATGAGGAAACAACTGGAAAGTACAAGAGCACCTCAACAAACCGTCGCTCATAGGAGCTATTTTACCTGGTGCAGGTTAGCAGGTACAGTTGCACGAAGATAAAAATGGCTGCAGATGCAGTTCAGGTGTGTTTGGTCATACATCTGTCCACCATGATTCCAGGGGCACTTGCAGATGAAGCTTGCCATGTATGTTGACAGATGCACCCCCCTTGT]




>consensus_2697#0
TTTTTTTTTTTCACAGAATCCCAATATCAAATATTAACATAGGATGTCGTACATATATAA
ACTCATTTTCCACAGTAAAGGAAAAGAAAAGGAGGTACATTTCTATTGCAAATTGTGTTG
CTAAAAATAGGAACGGCAGCTGTGCACCAGATCAGAACTAAAAAAAACAAATCTAGAGAC
CGGTGATGCATTTGCCATTGCAAGTGCGGTATCAGCCAAAGGATGTCCAGTCCAGGGTAC
TACGTGTGAACCTGAGGGAGAAAGGCCCCACCATAGTTGGACGCTCACATCGCAGGACCC
AAGCAAACAGTGGTTAAAAGGGCATGGCCCCTGCCCTTGTGCGGCGCACGGTGGAAGAAG
CACCAGTGCACCATGCAATGTCTCACGGTGGTGGCAATGGAGATCTCTTTTGCAAATATG
AGGAAACAACTGGAAAGTACAAGAGCACCTCAACAAACCGTCGCTCATAGGAGCTATTTT
ACCTGGTGCAGGTTAGCAGGTACAGTTGCACGAAGATAAAAATGGCTGCAGATGCAGTTC
AGGTGTGTTTGGTCATACATCTGTCCACCATGATTCCAGGGGCACTTGCAGATGAAGCTT
GCCATGTATGTTGACAGATGCACCCCCCTTGT

consensusID : consensus_2697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 117
fasta sequence

                              [CATGGACTGAGGAGTAGAAACCTCCTTTTCTTTTCCTTTACTGTGGAAAATGAGTTAATATATGTACGACATCCTATGTTAATATTTGATATTGGGATTCTGTGAGATCCTGCACAT]

[+] EMBL CF308149             [CATGGACTGAGGAGTAGAAACCTCCTTTTCTTTTCCTTTACTGTGGAAAATGAGTTAATATATGTACGACATCCTATGTTAATATTTGATATTGGGATTCTGTGAGATCCTGCACAT]




>consensus_2697#1
CATGGACTGAGGAGTAGAAACCTCCTTTTCTTTTCCTTTACTGTGGAAAATGAGTTAATA
TATGTACGACATCCTATGTTAATATTTGATATTGGGATTCTGTGAGATCCTGCACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2697#0      TTTTTTTTTTTCACAGAATCCCAATATCAAATATTAACATAGGATGTCGTACATATATAA 60
consensus_2697#1      ------------------------------------------------------------
                                                                                  

consensus_2697#0      ACTCATTTTCCACAGTAAAGGAAAAGAAAAGGAGGTACATTTCTATTGCAAATTGTGTTG 120
consensus_2697#1      ------------------------------------------------------------
                                                                                  

consensus_2697#0      CTAAAAATAGGAACGGCAGCTGTGCACCAGATCAGAACTAAAAAAAACAAATCTAGAGAC 180
consensus_2697#1      ------------------------------------------------------------
                                                                                  

consensus_2697#0      CGGTGATGCATTTGCCATTGCAAGTGCGGTATCAGCCAAAGGATGTCCAGTCCAGGGTAC 240
consensus_2697#1      ------------------------------------------------------------
                                                                                  

consensus_2697#0      TACGTGTGAACCTGAGGGAGAAAGGCCCCACCATAGTTGGACGCTCACATCGCAGGACCC 300
consensus_2697#1      ------------------------------------------------------------
                                                                                  

consensus_2697#0      AAGCAAACAGTGGTTAAAAGGGCATGGCCCCTGCCCTTGTGCGGCGCACGGTGGAAGAAG 360
consensus_2697#1      --------CATGGACTGAGGAGTAGAAACCTCCTTTTCTTTTCCTTTACTGTGGAAAATG 52
                                ***    * * * *    **      *  *       ** ****** * *

consensus_2697#0      CACCAGTGCACCATGCAATGTCTCACGGTGGTGGC-AATGGAGATCTCTTTTGCAAATAT 419
consensus_2697#1      AGTTAATATAT-GTACGACATCCTATGTTAATATTTGATATTGGGATTCTGTGAGATCCT 111
                          * *  *   * * *  **  * * *  *     **   *   *  * **  *   *

consensus_2697#0      GAGGAAACAACTGGAAAGTACAAGAGCACCTCAACAAACCGTCGCTCATAGGAGCTATTT 479
consensus_2697#1      GCACAT------------------------------------------------------ 117
                      *   *                                                       

consensus_2697#0      TACCTGGTGCAGGTTAGCAGGTACAGTTGCACGAAGATAAAAATGGCTGCAGATGCAGTT 539
consensus_2697#1      ------------------------------------------------------------
                                                                                  

consensus_2697#0      CAGGTGTGTTTGGTCATACATCTGTCCACCATGATTCCAGGGGCACTTGCAGATGAAGCT 599
consensus_2697#1      ------------------------------------------------------------
                                                                                  

consensus_2697#0      TGCCATGTATGTTGACAGATGCACCCCCCTTGT 632
consensus_2697#1      ---------------------------------