cluster # 2698

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2698 cluster # 2698 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2698#0 length = 464 sequences # 1

consensus_2698#1 length = 435 sequences # 1

consensusID : consensus_2698#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [GGGGCCAAGCAAGCGAAGCAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGGAAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTGGCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGACCTCCAGGGCTTCTCCGCCGACGACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCACGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGGCGTTTAATCCACACGAATGAACTACTGGCGCTTCTAGGGGAGGGGTACTATGTGGAGAGATCCGCCGAGCATACCACCGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAACTATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCCAATCAACTG]

[+] EMBL CB681551             [GGGGCCAAGCAAGCGAAGCAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGGAAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTGGCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGACCTCCAGGGCTTCTCCGCCGACGACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCACGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGGCGTTTAATCCACACGAATGAACTACTGGCGCTTCTAGGGGAGGGGTACTATGTGGAGAGATCCGCCGAGCATACCACCGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAACTATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCCAATCAACTG]




>consensus_2698#0
GGGGCCAAGCAAGCGAAGCAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGG
AAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTG
GCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGACCTCCAGGGCTT
CTCCGCCGACGACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCA
CGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGGCGTTTAATCCACACGAA
TGAACTACTGGCGCTTCTAGGGGAGGGGTACTATGTGGAGAGATCCGCCGAGCATACCAC
CGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAAC
TATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCCAATCAACTG

consensusID : consensus_2698#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [CAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGGAAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTGGCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGCCTCCAGGGCTTCTCCGCCGACAACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCACGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGCCGTTTAATCCACACGAATGAACTACTGGGGAGGGGTACTATGTGGAGAGATCCGCCAAGCAGACCACCGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAACTATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCGAATCAACTG]

[+] EMBL AK068358             [CAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGGAAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTGGCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGCCTCCAGGGCTTCTCCGCCGACAACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCACGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGCCGTTTAATCCACACGAATGAACTACTGGGGAGGGGTACTATGTGGAGAGATCCGCCAAGCAGACCACCGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAACTATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCGAATCAACTG]




>consensus_2698#1
CAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGGAAGGGGACGGCGACGCCG
CTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTGGCGCGGGTTGCCGAGGCC
GTCGCCGACCGCCGCGCCGAGCTCGGCCGCCTCCAGGGCTTCTCCGCCGACAACGCCGCC
CTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCACGACATCATGGTTCCCTTC
GGTGGCGCGGCATTTTTCCCCGGCCGTTTAATCCACACGAATGAACTACTGGGGAGGGGT
ACTATGTGGAGAGATCCGCCAAGCAGACCACCGAGATATTGCACAGGAGGGGGATGGAGC
TGGAAGCTCAAGTGGAAGCGATGAAGGCAACTATCTCTGACCTTGAAGCTGAGGCGAAGT
TCTTCGAATCAACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2698#0      GGGGCCAAGCAAGCGAAGCAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGG 60
consensus_2698#1      ------------------CAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGG 42
                                        ******************************************

consensus_2698#0      AAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTG 120
consensus_2698#1      AAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTG 102
                      ************************************************************

consensus_2698#0      GCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGACCTCCAGGGCTT 180
consensus_2698#1      GCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCG-CCTCCAGGGCTT 161
                      *********************************************** ************

consensus_2698#0      CTCCGCCGACGACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCA 240
consensus_2698#1      CTCCGCCGACAACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCA 221
                      ********** *************************************************

consensus_2698#0      CGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGGCGTTTAATCCACACGAA 300
consensus_2698#1      CGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGCCGTTTAATCCACACGAA 281
                      ****************************************** *****************

consensus_2698#0      TGAACTACTGGCGCTTCTAGGGGAGGGGTACTATGTGGAGAGATCCGCCGAGCATACCAC 360
consensus_2698#1      TGAACTACT----------GGGGAGGGGTACTATGTGGAGAGATCCGCCAAGCAGACCAC 331
                      *********          ****************************** **** *****

consensus_2698#0      CGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAAC 420
consensus_2698#1      CGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAAC 391
                      ************************************************************

consensus_2698#0      TATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCCAATCAACTG 464
consensus_2698#1      TATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCGAATCAACTG 435
                      ********************************** *********