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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2723#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1818 fasta sequence
[CACCACCTAAACCCACAAAAAACTAAACCAGAAAACCGCTTAACCGCAAGCGCCGAGGCGGAGAGCGGAGGCAGACGCAGACGCAGCAGCCGAGCACGCGGCGACGCCCACGCCCACGCACACAGCTCGGCTTCCCGGCGGAAACCCTAGCGGGCGGGCGGGCCCCAATGGCGGAGGAGGGCGACAAGGCCACGGCGGCGGCGGAGGCGGGGGGAGGAGCAGCCGCTACCGCCGCCGCTGGTGGTGGTGGTGGGGGTGGGGGTGGTGGAGCGGAGGAGGAGAGCGTGAAGCTGTTCGTGGGGCAGGTGCCGAAGCACATGACGGAGGCGGAGCTGCTCGCCATGTTCCAGGAGGTGGCCATCGTCGACGAGGTCACCGTCATCAAGGACAAGGCCACCAAGGCCTCGCGAGGGTGCTGCTTCCTCATATGCCCCTCGAGGGAAGAGGCTGACAAGGCAGTGAACGCTTACCACAATAAGCACACACTTCCTGGGGCATCAAGTCCTTTACAAGTAAAATATGCTGATGGAGAGTTGGAGAGACTAGAACACAAGCTTTTTATTGGAATGCTTCCAAAAAATGTAACGGACACCGAATTGACTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAACAAACAAGTAAAGCTGGCTGTGCATTCCTTAAATATGAAACAAAGGAGCAAGCAGTGGCAGCTATTGAGGCTCTAAATGGGAAGCACAAAATAGAGGGCTCTAGTGTGCCGTTGGTTGTCAAATGGGCCGATACAGAAAAGGAAAGGCAGGCCCGAAAAGCACAAAAGGCTCAATTGCAATCATCTAATATGCCTAGCGCGAGTCCTATGCAACAATCTTCATTATTTGGGGCTTTACAGATGGGATATATGCCTCAATATAATGGATTTGGCTATCAGCCACCAGGGACATACGGACTTATGCAGTACCCCTTATCTCCTATGCAGAATCAAGCCACATTCCCAAACATGGTTCAACCTGTTAATCAAGGAAACTCTATACGAGGAGTCAACCCTGAACTGTCCCCTAATTCAGTTCCTAGATCATTCAACGCAATGCAGTTAAGCAGCCCTTATCCACCTGTACCTGGTGTGCAGTATGCTGGATCCTACCCTGGTGGTCTCATGAATAATCGTCCTTTCGGGAATTCGTTCAGTTCGATTAAAGTTCCAATTGTAAATGCAAATTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAGGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGCTAAGGTTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTGGTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGATGAACGGTTTCCAATTAGGCAGTAAAAAACTCAAAGTACAACTCAAGAGAGACAACTCCAAGCACAGTAAACCCTTTTGACGAAAACTATGATGACCACGCGATCAGGTTCCTGGTACATATTTGTCAGATAATTGATCGTTGAATTGTTTGCTCTGGCCGCAGCATTGGGAGCTTCGTGTATCTTCTTTGTTCAATTCACATTCTTGAACACTGTTACGTCGTGTAATTTACTGCAGCCTAGTGGTAGAATTTGTTTCATCAGACCCTTGTACATCAGAAGTCAGATTCATTCAATTGTGGACATTTTCTCCTGACAGTGATTCCGGTTTCTCATTGACACGATTCC]
[+] EMBL AK099501 [CACCACCTAAACCCACAAAAAACTAAACCAGAAAACCGCTTAACCGCAAGCGCCGAGGCGGAGAGCGGAGGCAGACGCAGACGCAGCAGCCGAGCACGCGGCGACGCCCACGCCCACGCACACAGCTCGGCTTCCCGGCGGAAACCCTAGCGGGCGGGCGGGCCCCAATGGCGGAGGAGGGCGACAAGGCCACGGCGGCGGCGGAGGCGGGGGGAGGAGCAGCCGCTACCGCCGCCGCTGGTGGTGGTGGTGGGGGTGGGGGTGGTGGAGCGGAGGAGGAGAGCGTGAAGCTGTTCGTGGGGCAGGTGCCGAAGCACATGACGGAGGCGGAGCTGCTCGCCATGTTCCAGGAGGTGGCCATCGTCGACGAGGTCACCGTCATCAAGGACAAGGCCACCAAGGCCTCGCGAGGGTGCTGCTTCCTCATATGCCCCTCGAGGGAAGAGGCTGACAAGGCAGTGAACGCTTACCACAATAAGCACACACTTCCTGGGGCATCAAGTCCTTTACAAGTAAAATATGCTGATGGAGAGTTGGAGAGACTAGAACACAAGCTTTTTATTGGAATGCTTCCAAAAAATGTAACGGACACCGAATTGACTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAACAAACAAGTAAAGCTGGCTGTGCATTCCTTAAATATGAAACAAAGGAGCAAGCAGTGGCAGCTATTGAGGCTCTAAATGGGAAGCACAAAATAGAGGGCTCTAGTGTGCCGTTGGTTGTCAAATGGGCCGATACAGAAAAGGAAAGGCAGGCCCGAAAAGCACAAAAGGCTCAATTGCAATCATCTAATATGCCTAGCGCGAGTCCTATGCAACAATCTTCATTATTTGGGGCTTTACAGATGGGATATATGCCTCAATATAATGGATTTGGCTATCAGCCACCAGGGACATACGGACTTATGCAGTACCCCTTATCTCCTATGCAGAATCAAGCCACATTCCCAAACATGGTTCAACCTGTTAATCAAGGAAACTCTATACGAGGAGTCAACCCTGAACTGTCCCCTAATTCAGTTCCTAGATCATTCAACGCAATGCAGTTAAGCAGCCCTTATCCACCTGTACCTGGTGTGCAGTATGCTGGATCCTACCCTGGTGGTCTCATGAATAATCGTCCTTTCGGGAATTCGTTCAGTTCGATTAAAGTTCCAATTGTAAATGCAAATTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAGGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGCTAAGGTTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTGGTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGATGAACGGTTTCCAATTAGGCAGTAAAAAACTCAAAGTACAACTCAAGAGAGACAACTCCAAGCACAGTAAACCCTTTTGACGAAAACTATGATGACCACGCGATCAGGTTCCTGGTACATATTTGTCAGATAATTGATCGTTGAATTGTTTGCTCTGGCCGCAGCATTGGGAGCTTCGTGTATCTTCTTTGTTCAATTCACATTCTTGAACACTGTTACGTCGTGTAATTTACTGCAGCCTAGTGGTAGAATTTGTTTCATCAGACCCTTGTACATCAGAAGTCAGATTCATTCAATTGTGGACATTTTCTCCTGACAGTGATTCCGGTTTCTCATTGACACGATTCC]
consensusID : consensus_2723#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[CACACTCTCTCTCTCACACTACTACCCTCATGAGCACGGAGGCGACGATGGCGGCCGGCCGTGCGGGGTGGCACGTCGGGCGTTGAGGAAGCTGCTGTCATCGCCGCCGCCGTTGCTGCTGGTGTAGGTGTGGGCGGAGTAGAGAAGATCGTGAAGCTATTTATGGGGTAGGTGCCTGAGCACATGATGAAGGTGAAGCTGCTCACCATGTTCCAGGATGTGGCCATCGTCGACAAGGTCACCGTCATCAAGGACAAGGCCTCTTGTGGTGTGGATCTGTACACCCAGATTTAGGCTTGTGACTCTCGAGCTCTTACATTGGCTTGTTTCTAAGGTTTAGTTTGGGGTTTTCTACATGTTATATGGGTGTTTCTACAGTTATGATGACTTTTTATTGAGCTCTT]
[+] EMBL AK107752 [CACACTCTCTCTCTCACACTACTACCCTCATGAGCACGGAGGCGACGATGGCGGCCGGCCGTGCGGGGTGGCACGTCGGGCGTTGAGGAAGCTGCTGTCATCGCCGCCGCCGTTGCTGCTGGTGTAGGTGTGGGCGGAGTAGAGAAGATCGTGAAGCTATTTATGGGGTAGGTGCCTGAGCACATGATGAAGGTGAAGCTGCTCACCATGTTCCAGGATGTGGCCATCGTCGACAAGGTCACCGTCATCAAGGACAAGGCCTCTTGTGGTGTGGATCTGTACACCCAGATTTAGGCTTGTGACTCTCGAGCTCTTACATTGGCTTGTTTCTAAGGTTTAGTTTGGGGTTTTCTACATGTTATATGGGTGTTTCTACAGTTATGATGACTTTTTATTGAGCTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2723#0 CACCACCTAAACCCACAAAAAACTAAACCAGAAAACCGCTTAACCGCAAGCGCCGAGGCG 60
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 GAGAGCGGAGGCAGACGCAGACGCAGCAGCCGAGCACGCGGCGACGCCCACGCCCACGCA 120
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 CACAGCTCGGCTTCCCGGCGGAAACCCTAGCGGGCGGGCGGGCCCCAATGGCGGAGGAGG 180
consensus_2723#1 CACACTCTCTCTCTCACACTACTACCCTCATGAGCACGGAGGCGACGATGGCGGCCGGCC 60
**** ** * * ***** * ** * *** * ******* *
consensus_2723#0 GCGACAAGGCCACGGCGGCGGCGGAGGCGGGGGGAGGAGCAGCCGCTACCGCCGCCGCTG 240
consensus_2723#1 GTG-------CGGGGTGGCA-CGTCGGGCGTTGAGGAAGCTGCTGTCATCGCCGCCGCCG 112
* * * ** *** ** ** * * * *** ** * * ********* *
consensus_2723#0 GTGGTGGTGGTGGGGGTGGGGGTGGTGGAGCGGAGGAGGAGAGCGTGAAGCTGTTCGTGG 300
consensus_2723#1 TTGCTGCTGGTGTAGGTGTGGGCGGAGTAG------AGAAGATCGTGAAGCTATTTATGG 166
** ** ***** **** *** ** * ** ** *** ********* ** ***
consensus_2723#0 GGCAGGTGCCGAAGCACATGACGGAGGCGGAGCTGCTCGCCATGTTCCAGGAGGTGGCCA 360
consensus_2723#1 GGTAGGTGCCTGAGCACATGATGAAGGTGAAGCTGCTCACCATGTTCCAGGATGTGGCCA 226
** ******* ********* * *** * ******** ************* *******
consensus_2723#0 TCGTCGACGAGGTCACCGTCATCAAGGACAAGGCCACCAAGGCCTCGCGAGGGTGCTGCT 420
consensus_2723#1 TCGTCGACAAGGTCACCGTCATCAAGGACAAGGCCTCTTG----TGGTGTGGAT-CTGTA 281
******** ************************** * * * * ** * ***
consensus_2723#0 TCCTCATATGCCCCTCGAGGGAAGAGGCTGACAAGGCAGTGAACGCTTACCACAATAAGC 480
consensus_2723#1 CACCCAGATTT-------------AGGCTTGTGACTCT-CGAGCTCTTACATTGGCTTGT 327
* ** ** ***** * * ** * ***** *
consensus_2723#0 ACACACTTCCTGGGGCATCAAGTCCTTTACAAGTAAAATATGCTGATGGAGAGTTGGAGA 540
consensus_2723#1 TTCTAAGGTTTA--GTTTGGGGTTTTCTACATGTTATATGGGTGTTTCTACAGTTATGAT 385
* * * * ** * **** ** * ** * * * ****
consensus_2723#0 GACTAGAACACAAGCTTTTTATTGGAATGCTTCCAAAAAATGTAACGGACACCGAATTGA 600
consensus_2723#1 GACTTTTTATTGAGCTCTT----------------------------------------- 404
**** **** **
consensus_2723#0 CTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAAC 660
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 AAACAAGTAAAGCTGGCTGTGCATTCCTTAAATATGAAACAAAGGAGCAAGCAGTGGCAG 720
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 CTATTGAGGCTCTAAATGGGAAGCACAAAATAGAGGGCTCTAGTGTGCCGTTGGTTGTCA 780
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 AATGGGCCGATACAGAAAAGGAAAGGCAGGCCCGAAAAGCACAAAAGGCTCAATTGCAAT 840
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 CATCTAATATGCCTAGCGCGAGTCCTATGCAACAATCTTCATTATTTGGGGCTTTACAGA 900
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 TGGGATATATGCCTCAATATAATGGATTTGGCTATCAGCCACCAGGGACATACGGACTTA 960
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 TGCAGTACCCCTTATCTCCTATGCAGAATCAAGCCACATTCCCAAACATGGTTCAACCTG 1020
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 TTAATCAAGGAAACTCTATACGAGGAGTCAACCCTGAACTGTCCCCTAATTCAGTTCCTA 1080
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 GATCATTCAACGCAATGCAGTTAAGCAGCCCTTATCCACCTGTACCTGGTGTGCAGTATG 1140
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 CTGGATCCTACCCTGGTGGTCTCATGAATAATCGTCCTTTCGGGAATTCGTTCAGTTCGA 1200
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 TTAAAGTTCCAATTGTAAATGCAAATTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTG 1260
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 GTGGCCAAATAGAAGGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATT 1320
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 ATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGCTAAGG 1380
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 TTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTGGTTTTGTAAGCTACGATTCTC 1440
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 CTGCTTCCGCACAGGCAGCCATTGGTGTGATGAACGGTTTCCAATTAGGCAGTAAAAAAC 1500
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 TCAAAGTACAACTCAAGAGAGACAACTCCAAGCACAGTAAACCCTTTTGACGAAAACTAT 1560
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 GATGACCACGCGATCAGGTTCCTGGTACATATTTGTCAGATAATTGATCGTTGAATTGTT 1620
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 TGCTCTGGCCGCAGCATTGGGAGCTTCGTGTATCTTCTTTGTTCAATTCACATTCTTGAA 1680
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 CACTGTTACGTCGTGTAATTTACTGCAGCCTAGTGGTAGAATTTGTTTCATCAGACCCTT 1740
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 GTACATCAGAAGTCAGATTCATTCAATTGTGGACATTTTCTCCTGACAGTGATTCCGGTT 1800
consensus_2723#1 ------------------------------------------------------------
consensus_2723#0 TCTCATTGACACGATTCC 1818
consensus_2723#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||