These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2742#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1744 fasta sequence [TAGATCATCTAAACAAGATAACGAATTATCATTAATCCCTGATTTACAGATGTTGTGGGCTTCCGATTGTCCAAAGTTGAAATTCCTGCCTTATCCACCAAGGAGCTTGACATGGTTCATAGAGAATAGCAATCACGTGTTGCCAGAACATGGGTTTGGGAACCTTACATCTGCTACTTATCCACTTCATCTTTCCATCGAGCGTGCACCCAATTCTCGCGAAATGTGGCGTAGGGCTCAGCACCTTTCTTCAATCGAGTCTCTTACTCTCATGTCTATAGCTGGCCTTAGAGCCCTGCCAGAGGCTATTCAGTGCTTCACGTCCCTCTGGAGACTCAGTATATTGGGATGTGGTGAGTTGGAGACGCTGCCGGAATGGCTAGGAGATTATTTCACTTGTCTGGAAGAGATTTCGATCGACACTTGCCCAATGCTGTCTTCACTGCCGGAAAGCATACGACGCCTCACTAAGCTGAAGAAGTTACGGATCACCAACTGCCCTGTATTGTCAGAGAAGTGCCAAGGAGAGGACAGGCACAAGATTGCTCATATTCTAGAGCCCATATTCCTGTAAAAGAAGCTCCCACCTAGATCAGCAGGCATACAGGCCGAGATGTAGCATGCATGGTTGGCTGATACTGTTAGCAGGGTAAGTTTACAAAACTTTTAAGGTAATATGAAAAACTATTTGATCTTTCACCAGCGGATCTATATTTGAACTAGAGGGCTGGGACCTCATACGTGCAGGCAATTGGACCGTAAAGCGAAAGCGGCTGCTTATGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTCAGAGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAATACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAACAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTCTGCTAGTAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTAAACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTTGTCGTTCATCACTCTCAGTGGCTGCTTACCAGGCTGGATTAAATCTCGATATCTGTTTGTCAGTAAGACAAGTTAGCAGATGGTACATCTGCTTGTGTGTAATCACATCATTAATGTCAGCAATGAATATCTGATACCCAAGAGGCACCTGTATGAAAAAAGAATATACATATCTTGTCGACTGCAATGTTGCAAACACATCCATGAAAAGATGCTCTGAGTGATCCTGAACTGGATGTAACATAACGGTGCTTTCTCAGAAAGAAAATGAGAGAGAGGAAGATCCTGAGCCTGGCAAGAACAGCTATGCAACTGTGCAAGTACAAGCCTTGAAATCTTGAAAGGTACATCCTGTCGATTTCACTCCTTTTTGCCCTGTATTCATGAGCCGTGAAGAGGAGACATCTCATTGCAATCCTGAATTTTGGGAGTGTGTGTGGCAGGTGCTCAATTTGTTTGGTCTTTGTCCTATGAGGTTTAGGTTAGGTTCCTGGCTCTTCAACTTTGACCTGTCTGTATGAGGGCAGGTCAGCTGGAATTTCTTGGAATTTTTGCAAGTTGTGTACTTCACTTGTACTACCGAATCAGCCAAATTTTAAGCAGT] [+] EMBL AK105844 [TAGATCATCTAAACAAGATAACGAATTATCATTAATCCCTGATTTACAGATGTTGTGGGCTTCCGATTGTCCAAAGTTGAAATTCCTGCCTTATCCACCAAGGAGCTTGACATGGTTCATAGAGAATAGCAATCACGTGTTGCCAGAACATGGGTTTGGGAACCTTACATCTGCTACTTATCCACTTCATCTTTCCATCGAGCGTGCACCCAATTCTCGCGAAATGTGGCGTAGGGCTCAGCACCTTTCTTCAATCGAGTCTCTTACTCTCATGTCTATAGCTGGCCTTAGAGCCCTGCCAGAGGCTATTCAGTGCTTCACGTCCCTCTGGAGACTCAGTATATTGGGATGTGGTGAGTTGGAGACGCTGCCGGAATGGCTAGGAGATTATTTCACTTGTCTGGAAGAGATTTCGATCGACACTTGCCCAATGCTGTCTTCACTGCCGGAAAGCATACGACGCCTCACTAAGCTGAAGAAGTTACGGATCACCAACTGCCCTGTATTGTCAGAGAAGTGCCAAGGAGAGGACAGGCACAAGATTGCTCATATTCTAGAGCCCATATTCCTGTAAAAGAAGCTCCCACCTAGATCAGCAGGCATACAGGCCGAGATGTAGCATGCATGGTTGGCTGATACTGTTAGCAGGGTAAGTTTACAAAACTTTTAAGGTAATATGAAAAACTATTTGATCTTTCACCAGCGGATCTATATTTGAACTAGAGGGCTGGGACCTCATACGTGCAGGCAATTGGACCGTAAAGCGAAAGCGGCTGCTTATGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTCAGAGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAATACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAACAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTCTGCTAGTAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTAAACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTTGTCGTTCATCACTCTCAGTGGCTGCTTACCAGGCTGGATTAAATCTCGATATCTGTTTGTCAGTAAGACAAGTTAGCAGATGGTACATCTGCTTGTGTGTAATCACATCATTAATGTCAGCAATGAATATCTGATACCCAAGAGGCACCTGTATGAAAAAAGAATATACATATCTTGTCGACTGCAATGTTGCAAACACATCCATGAAAAGATGCTCTGAGTGATCCTGAACTGGATGTAACATAACGGTGCTTTCTCAGAAAGAAAATGAGAGAGAGGAAGATCCTGAGCCTGGCAAGAACAGCTATGCAACTGTGCAAGTACAAGCCTTGAAATCTTGAAAGGTACATCCTGTCGATTTCACTCCTTTTTGCCCTGTATTCATGAGCCGTGAAGAGGAGACATCTCATTGCAATCCTGAATTTTGGGAGTGTGTGTGGCAGGTGCTCAATTTGTTTGGTCTTTGTCCTATGAGGTTTAGGTTAGGTTCCTGGCTCTTCAACTTTGACCTGTCTGTATGAGGGCAGGTCAGCTGGAATTTCTTGGAATTTTTGCAAGTTGTGTACTTCACTTGTACTACCGAATCAGCCAAATTTTAAGCAGT] consensusID : consensus_2742#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [AAGCGAAAGCGGCTGCTTATGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTTAGAGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAATACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAACAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTTTGCTAGTAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTAAACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTTGTCGTTCATCACTCTCAGTGGCTGCTTACCAGGTTGGATTAAATCTCGATATCTGTTTGTCAGTAAGACAAGTTAGCAGATGGGTAAGCATGATGCCCATTTCCTTTTTATTTTCACGCAGATATGCTTCTTGAGTTGTTGCTGTGTTGTGTTCTTAGTATGTTGTATCTGCCCAAGTATATGATGATGGTGTGAATAGTAATGAACAAAGTGCATATACCTTGTAAACAGAGATTTTCTGGCCCATTGTAATGGTTGTGATAATCATTTATGCATTTGTTCGTTGGCAACTGAACAGTAAAAAAAAAAAAAAA] [-] EMBL CA763558 [AAGCGAAAGCGGCTGCTTATGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTTAGAGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAATACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAACAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTTTGCTAGTAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTAAACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTTGTCGTTCATCACTCTCAGTGGCTGCTTACCAGGTTGGATTAAATCTCGATATCTGTTTGTCAGTAAGACAAGTTAGCAGATGGGTAAGCATGATGCCCATTTCCTTTTTATTTTCACGCAGATATGCTTCTTGAGTTGTTGCTGTGTTGTGTTCTTAGTATGTTGTATCTGCCCAAGTATATGATGATGGTGTGAATAGTAATGAACAAAGTGCATATACCTTGTAAACAGAGATTTTCTGGCCCATTGTAATGGTTGTGATAATCATTTATGCATTTGTTCGTTGGCAACTGAACAGTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2742#0 TAGATCATCTAAACAAGATAACGAATTATCATTAATCCCTGATTTACAGATGTTGTGGGC 60 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 TTCCGATTGTCCAAAGTTGAAATTCCTGCCTTATCCACCAAGGAGCTTGACATGGTTCAT 120 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 AGAGAATAGCAATCACGTGTTGCCAGAACATGGGTTTGGGAACCTTACATCTGCTACTTA 180 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 TCCACTTCATCTTTCCATCGAGCGTGCACCCAATTCTCGCGAAATGTGGCGTAGGGCTCA 240 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 GCACCTTTCTTCAATCGAGTCTCTTACTCTCATGTCTATAGCTGGCCTTAGAGCCCTGCC 300 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 AGAGGCTATTCAGTGCTTCACGTCCCTCTGGAGACTCAGTATATTGGGATGTGGTGAGTT 360 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 GGAGACGCTGCCGGAATGGCTAGGAGATTATTTCACTTGTCTGGAAGAGATTTCGATCGA 420 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 CACTTGCCCAATGCTGTCTTCACTGCCGGAAAGCATACGACGCCTCACTAAGCTGAAGAA 480 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 GTTACGGATCACCAACTGCCCTGTATTGTCAGAGAAGTGCCAAGGAGAGGACAGGCACAA 540 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 GATTGCTCATATTCTAGAGCCCATATTCCTGTAAAAGAAGCTCCCACCTAGATCAGCAGG 600 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 CATACAGGCCGAGATGTAGCATGCATGGTTGGCTGATACTGTTAGCAGGGTAAGTTTACA 660 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 AAACTTTTAAGGTAATATGAAAAACTATTTGATCTTTCACCAGCGGATCTATATTTGAAC 720 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 TAGAGGGCTGGGACCTCATACGTGCAGGCAATTGGACCGTAAAGCGAAAGCGGCTGCTTA 780 consensus_2742#1 -----------------------------------------AAGCGAAAGCGGCTGCTTA 19 ******************* consensus_2742#0 TGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTCAG 840 consensus_2742#1 TGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTTAG 79 ********************************************************* ** consensus_2742#0 AGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAAT 900 consensus_2742#1 AGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAAT 139 ************************************************************ consensus_2742#0 ACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAA 960 consensus_2742#1 ACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAA 199 ************************************************************ consensus_2742#0 CAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTCTGCTAG 1020 consensus_2742#1 CAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTTTGCTAG 259 ***************************************************** ****** consensus_2742#0 TAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTA 1080 consensus_2742#1 TAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTA 319 ************************************************************ consensus_2742#0 AACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTT 1140 consensus_2742#1 AACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTT 379 ************************************************************ consensus_2742#0 GTCGTTCATCACTCTCAGTGGCTGCTTACCAGGCTGGATTAAATCTCGATATCTGTTTGT 1200 consensus_2742#1 GTCGTTCATCACTCTCAGTGGCTGCTTACCAGGTTGGATTAAATCTCGATATCTGTTTGT 439 ********************************* ************************** consensus_2742#0 CAGTAAGACAAGTTAGCAGATGGTACATCTGCTTGTGTGTAATCACATCATTAATGTCAG 1260 consensus_2742#1 CAGTAAGACAAGTTAGCAGATGG---GTAAGCATGATGCCCATTTCCTTTTTATTTTCA- 495 *********************** * ** ** ** * * *** * *** consensus_2742#0 CAATGAATATCTGATACCCAAGAGGCACCTGTATGAAAAAAGAATATACATATCTTGTCG 1320 consensus_2742#1 ---CGCAGATATGCTTCTTGAGTTGTTGCTGTGT------------TGTGTTCTTAGTAT 540 * * ** ** * * ** * **** * * * * ** consensus_2742#0 ACTGCAATGTTGCAAACACATCCATGAAAAGATGCTCTGAGTGATCCTGAACTGGATGTA 1380 consensus_2742#1 GTTGTATCTGCCCAAGTATAT------GATGATGGTGTGAATAGTAATGAACAAAGTG-- 592 ** * *** * ** * **** * *** * * ***** ** consensus_2742#0 ACATAACGGTGCTTTCTCAGAAAGAAAATGAGAGAGAGGAAGATCCTGAGCCTGGCAAGA 1440 consensus_2742#1 -CATA----TACCTTGT--AAACAGAGATTTTCTGGCCCATTGTAATGGTTGTGATAA-- 643 **** * * ** * ** * ** * * * ** ** ** consensus_2742#0 ACAGCTATGCAACTGTGCAAGTACAAGCCTTGAAATCTTGAAAGGTACATCCTGTCGATT 1500 consensus_2742#1 TCATTTATGCATTTGTTCGTTGGCAA---CTGAACAGTAAAAAAAAAAAAAAA------- 693 ** ****** *** * *** **** * *** * * consensus_2742#0 TCACTCCTTTTTGCCCTGTATTCATGAGCCGTGAAGAGGAGACATCTCATTGCAATCCTG 1560 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 AATTTTGGGAGTGTGTGTGGCAGGTGCTCAATTTGTTTGGTCTTTGTCCTATGAGGTTTA 1620 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 GGTTAGGTTCCTGGCTCTTCAACTTTGACCTGTCTGTATGAGGGCAGGTCAGCTGGAATT 1680 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 TCTTGGAATTTTTGCAAGTTGTGTACTTCACTTGTACTACCGAATCAGCCAAATTTTAAG 1740 consensus_2742#1 ------------------------------------------------------------ consensus_2742#0 CAGT 1744 consensus_2742#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||