cluster # 2762

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Oryza sativa
cluster # 2762 cluster # 2762 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2762#0 length = 859 sequences # 1

consensus_2762#1 length = 410 sequences # 1

consensusID : consensus_2762#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 859
fasta sequence

                              [GTGCGATTCCAATAACTGCTGATGCCTCTTTTCACCCCTCTCAATTCGTGTTTATTCGTCAGGATGATGATGCGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCAACTACCCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGACTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCGGCTGGTTAACTCCCTGTCCACCCCGGTAAGACCTCCTATTCTTCCGACCCCAAGACCGATTCGCACTAAACGACCCAAAATAGCAATCCAGTCCTCCCAACGTCATAGTGAGGGGTTAGAATCTAAGCGGAGAAACAATTGTAAACTTGAGATGGTTGGGCAAGAAATCATTTCTAAAAGGTTTGGTACAACGAATGAAGGTGACATCTTCAATGGGAATGTTAAAAAGCTCTATTTGCAGCGCTTCAAGAGGCCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGAAGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTGAAGATGATCGTTGCTGTCTTGGAGGGCGCCTACATAAATAAATGGGTGCCACCTTNCTTTGCAGGCCGAGGAAGAACCATGAAGATGATGATAGGAGGATGCTCGNTGTGTGCTGNCCTGGTTTTTTGGTTGGTTTGNGCCGCCGAGCCTTGATAGTCCTNCAACCACTGNCACTGATGCATGAGTGGCCTAAGGATGGTTATCTTANACTGGTGCTTGCTGATATGGACCAANGCTGCATCTNTGGGATGGAANGGCCGACCTGGCG]

[+] EMBL CA765410             [GTGCGATTCCAATAACTGCTGATGCCTCTTTTCACCCCTCTCAATTCGTGTTTATTCGTCAGGATGATGATGCGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCAACTACCCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGACTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCGGCTGGTTAACTCCCTGTCCACCCCGGTAAGACCTCCTATTCTTCCGACCCCAAGACCGATTCGCACTAAACGACCCAAAATAGCAATCCAGTCCTCCCAACGTCATAGTGAGGGGTTAGAATCTAAGCGGAGAAACAATTGTAAACTTGAGATGGTTGGGCAAGAAATCATTTCTAAAAGGTTTGGTACAACGAATGAAGGTGACATCTTCAATGGGAATGTTAAAAAGCTCTATTTGCAGCGCTTCAAGAGGCCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGAAGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTGAAGATGATCGTTGCTGTCTTGGAGGGCGCCTACATAAATAAATGGGTGCCACCTTNCTTTGCAGGCCGAGGAAGAACCATGAAGATGATGATAGGAGGATGCTCGNTGTGTGCTGNCCTGGTTTTTTGGTTGGTTTGNGCCGCCGAGCCTTGATAGTCCTNCAACCACTGNCACTGATGCATGAGTGGCCTAAGGATGGTTATCTTANACTGGTGCTTGCTGATATGGACCAANGCTGCATCTNTGGGATGGAANGGCCGACCTGGCG]




>consensus_2762#0
GTGCGATTCCAATAACTGCTGATGCCTCTTTTCACCCCTCTCAATTCGTGTTTATTCGTC
AGGATGATGATGCGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCA
ACTACCCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGA
CTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCGGCTGGTTAACTCCC
TGTCCACCCCGGTAAGACCTCCTATTCTTCCGACCCCAAGACCGATTCGCACTAAACGAC
CCAAAATAGCAATCCAGTCCTCCCAACGTCATAGTGAGGGGTTAGAATCTAAGCGGAGAA
ACAATTGTAAACTTGAGATGGTTGGGCAAGAAATCATTTCTAAAAGGTTTGGTACAACGA
ATGAAGGTGACATCTTCAATGGGAATGTTAAAAAGCTCTATTTGCAGCGCTTCAAGAGGC
CACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGAA
GACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTGAAGATGATC
GTTGCTGTCTTGGAGGGCGCCTACATAAATAAATGGGTGCCACCTTNCTTTGCAGGCCGA
GGAAGAACCATGAAGATGATGATAGGAGGATGCTCGNTGTGTGCTGNCCTGGTTTTTTGG
TTGGTTTGNGCCGCCGAGCCTTGATAGTCCTNCAACCACTGNCACTGATGCATGAGTGGC
CTAAGGATGGTTATCTTANACTGGTGCTTGCTGATATGGACCAANGCTGCATCTNTGGGA
TGGAANGGCCGACCTGGCG

consensusID : consensus_2762#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [CAAGGGGGGAAGTGAACAGGGCTTCTTCCAGGCGACTGGAAGGGGACGGAACAGGAAAAGGATAGCCTCAAGAGGAAGCGGCGACCTGACTGTAAAAGATGATGATGTGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCAACTACTCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGACTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCAGCTGGTTAACTCCCTGTCCACCCCGCGCTTCAAGAGGCCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGAAGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTG]

[+] EMBL CA763782             [CAAGGGGGGAAGTGAACAGGGCTTCTTCCAGGCGACTGGAAGGGGACGGAACAGGAAAAGGATAGCCTCAAGAGGAAGCGGCGACCTGACTGTAAAAGATGATGATGTGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCAACTACTCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGACTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCAGCTGGTTAACTCCCTGTCCACCCCGCGCTTCAAGAGGCCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGAAGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTG]




>consensus_2762#1
CAAGGGGGGAAGTGAACAGGGCTTCTTCCAGGCGACTGGAAGGGGACGGAACAGGAAAAG
GATAGCCTCAAGAGGAAGCGGCGACCTGACTGTAAAAGATGATGATGTGACTCAGGGCTG
TGGGGATGACCCAATGGAGGTACAAGTAGCTATCAACTACTCGCCGGAGGGGGACGGAAG
CAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGACTGGGTTGGATGCGGTGCAGGAAAC
CAGCATTGACATGGTGGATCAGCTGGTTAACTCCCTGTCCACCCCGCGCTTCAAGAGGCC
ACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGAAG
ACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2762#0      GTGCGATTCCAATAACTGCTGATGCCTCTTTTCACCCCTCTCAATTCGTGTTTATTCGTC 60
consensus_2762#1      ------------------------------------------------------------
                                                                                  

consensus_2762#0      AGGATGATGATGCGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCA 120
consensus_2762#1      ------------------------------------------------------------
                                                                                  

consensus_2762#0      ACTACCCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGA 180
consensus_2762#1      ---------------------CAAGGGGGGAAG--TGAACAGGGCTTCTTCCA--GGCGA 35
                                            ***  ** * *  **  * * *     ****  *****

consensus_2762#0      CTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCGGCTGGTTAACTCCC 240
consensus_2762#1      CTGGAA-GGGGACGGAACAGGAAAAGGATAGCCTCAAGAGGAAGCGGCGACCTGACT--- 91
                      ****   **   ***  *******     *    ** *  * * ****    * ***   

consensus_2762#0      TGTCCACCCCGGTAAGACCTCCTATTCTTCCGACCCCAAGACCGATTCGCACTAAACGAC 300
consensus_2762#1      -----------GTAAAAGATGATGATGT----GACTCAGGGCTG--TGG----GGATGAC 130
                                 **** *  *  *  * *      * ** * * *  * *      * ***

consensus_2762#0      CCAAAATAGCAATCCAGTCCTCCCAACGTCATAGTGAGGGGTTAGAATCTAAGCGGAGAA 360
consensus_2762#1      CCAATGGAGGTACAAGTAGCTATCAACTACTCGCCGGAGGG---GGACGGAAGCAGGAAG 187
                      ****   **  *       **  ****  *     *  ***   * *   **** *  * 

consensus_2762#0      ACAATTGTAAACTTGAGATGGTTGGGCAAGAAATCATTTCTAAAAGGTTTGGTACAACGA 420
consensus_2762#1      GC--TTGC---CCTGAGTACACTCCATTGGCGACTGGGTT----GGATGCGGTGCAGGAA 238
                       *  ***    * ****     *      *  *     *      * *  *** **   *

consensus_2762#0      ATGAAGGT-GACATCTTCAATGGGAATGTTAAAAAGCTCTATTTGCAGCGCTTCAAGAGG 479
consensus_2762#1      ACCAGCATTGACATGGTGGATCAGCTGGTTAACTCCCTGTCCACCCCGCGCTTCAAGAGG 298
                      *  *   * *****  *  **  *   *****    ** *     * *************

consensus_2762#0      CCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGA 539
consensus_2762#1      CCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGA 358
                      ************************************************************

consensus_2762#0      AGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTGAAGATGAT 599
consensus_2762#1      AGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTG-------- 410
                      ****************************************************        

consensus_2762#0      CGTTGCTGTCTTGGAGGGCGCCTACATAAATAAATGGGTGCCACCTTNCTTTGCAGGCCG 659
consensus_2762#1      ------------------------------------------------------------
                                                                                  

consensus_2762#0      AGGAAGAACCATGAAGATGATGATAGGAGGATGCTCGNTGTGTGCTGNCCTGGTTTTTTG 719
consensus_2762#1      ------------------------------------------------------------
                                                                                  

consensus_2762#0      GTTGGTTTGNGCCGCCGAGCCTTGATAGTCCTNCAACCACTGNCACTGATGCATGAGTGG 779
consensus_2762#1      ------------------------------------------------------------
                                                                                  

consensus_2762#0      CCTAAGGATGGTTATCTTANACTGGTGCTTGCTGATATGGACCAANGCTGCATCTNTGGG 839
consensus_2762#1      ------------------------------------------------------------
                                                                                  

consensus_2762#0      ATGGAANGGCCGACCTGGCG 859
consensus_2762#1      --------------------