These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 859 fasta sequence [GTGCGATTCCAATAACTGCTGATGCCTCTTTTCACCCCTCTCAATTCGTGTTTATTCGTCAGGATGATGATGCGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCAACTACCCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGACTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCGGCTGGTTAACTCCCTGTCCACCCCGGTAAGACCTCCTATTCTTCCGACCCCAAGACCGATTCGCACTAAACGACCCAAAATAGCAATCCAGTCCTCCCAACGTCATAGTGAGGGGTTAGAATCTAAGCGGAGAAACAATTGTAAACTTGAGATGGTTGGGCAAGAAATCATTTCTAAAAGGTTTGGTACAACGAATGAAGGTGACATCTTCAATGGGAATGTTAAAAAGCTCTATTTGCAGCGCTTCAAGAGGCCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGAAGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTGAAGATGATCGTTGCTGTCTTGGAGGGCGCCTACATAAATAAATGGGTGCCACCTTNCTTTGCAGGCCGAGGAAGAACCATGAAGATGATGATAGGAGGATGCTCGNTGTGTGCTGNCCTGGTTTTTTGGTTGGTTTGNGCCGCCGAGCCTTGATAGTCCTNCAACCACTGNCACTGATGCATGAGTGGCCTAAGGATGGTTATCTTANACTGGTGCTTGCTGATATGGACCAANGCTGCATCTNTGGGATGGAANGGCCGACCTGGCG] [+] EMBL CA765410 [GTGCGATTCCAATAACTGCTGATGCCTCTTTTCACCCCTCTCAATTCGTGTTTATTCGTCAGGATGATGATGCGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCAACTACCCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGACTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCGGCTGGTTAACTCCCTGTCCACCCCGGTAAGACCTCCTATTCTTCCGACCCCAAGACCGATTCGCACTAAACGACCCAAAATAGCAATCCAGTCCTCCCAACGTCATAGTGAGGGGTTAGAATCTAAGCGGAGAAACAATTGTAAACTTGAGATGGTTGGGCAAGAAATCATTTCTAAAAGGTTTGGTACAACGAATGAAGGTGACATCTTCAATGGGAATGTTAAAAAGCTCTATTTGCAGCGCTTCAAGAGGCCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGAAGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTGAAGATGATCGTTGCTGTCTTGGAGGGCGCCTACATAAATAAATGGGTGCCACCTTNCTTTGCAGGCCGAGGAAGAACCATGAAGATGATGATAGGAGGATGCTCGNTGTGTGCTGNCCTGGTTTTTTGGTTGGTTTGNGCCGCCGAGCCTTGATAGTCCTNCAACCACTGNCACTGATGCATGAGTGGCCTAAGGATGGTTATCTTANACTGGTGCTTGCTGATATGGACCAANGCTGCATCTNTGGGATGGAANGGCCGACCTGGCG] consensusID : consensus_2762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CAAGGGGGGAAGTGAACAGGGCTTCTTCCAGGCGACTGGAAGGGGACGGAACAGGAAAAGGATAGCCTCAAGAGGAAGCGGCGACCTGACTGTAAAAGATGATGATGTGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCAACTACTCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGACTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCAGCTGGTTAACTCCCTGTCCACCCCGCGCTTCAAGAGGCCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGAAGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTG] [+] EMBL CA763782 [CAAGGGGGGAAGTGAACAGGGCTTCTTCCAGGCGACTGGAAGGGGACGGAACAGGAAAAGGATAGCCTCAAGAGGAAGCGGCGACCTGACTGTAAAAGATGATGATGTGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCAACTACTCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGACTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCAGCTGGTTAACTCCCTGTCCACCCCGCGCTTCAAGAGGCCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGAAGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2762#0 GTGCGATTCCAATAACTGCTGATGCCTCTTTTCACCCCTCTCAATTCGTGTTTATTCGTC 60 consensus_2762#1 ------------------------------------------------------------ consensus_2762#0 AGGATGATGATGCGACTCAGGGCTGTGGGGATGACCCAATGGAGGTACAAGTAGCTATCA 120 consensus_2762#1 ------------------------------------------------------------ consensus_2762#0 ACTACCCGCCGGAGGGGGACGGAAGCAGGAAGGCTTGCCCTGAGTACACTCCATTGGCGA 180 consensus_2762#1 ---------------------CAAGGGGGGAAG--TGAACAGGGCTTCTTCCA--GGCGA 35 *** ** * * ** * * * **** ***** consensus_2762#0 CTGGGTTGGATGCGGTGCAGGAAACCAGCATTGACATGGTGGATCGGCTGGTTAACTCCC 240 consensus_2762#1 CTGGAA-GGGGACGGAACAGGAAAAGGATAGCCTCAAGAGGAAGCGGCGACCTGACT--- 91 **** ** *** ******* * ** * * * **** * *** consensus_2762#0 TGTCCACCCCGGTAAGACCTCCTATTCTTCCGACCCCAAGACCGATTCGCACTAAACGAC 300 consensus_2762#1 -----------GTAAAAGATGATGATGT----GACTCAGGGCTG--TGG----GGATGAC 130 **** * * * * * * ** * * * * * * *** consensus_2762#0 CCAAAATAGCAATCCAGTCCTCCCAACGTCATAGTGAGGGGTTAGAATCTAAGCGGAGAA 360 consensus_2762#1 CCAATGGAGGTACAAGTAGCTATCAACTACTCGCCGGAGGG---GGACGGAAGCAGGAAG 187 **** ** * ** **** * * *** * * **** * * consensus_2762#0 ACAATTGTAAACTTGAGATGGTTGGGCAAGAAATCATTTCTAAAAGGTTTGGTACAACGA 420 consensus_2762#1 GC--TTGC---CCTGAGTACACTCCATTGGCGACTGGGTT----GGATGCGGTGCAGGAA 238 * *** * **** * * * * * * *** ** * consensus_2762#0 ATGAAGGT-GACATCTTCAATGGGAATGTTAAAAAGCTCTATTTGCAGCGCTTCAAGAGG 479 consensus_2762#1 ACCAGCATTGACATGGTGGATCAGCTGGTTAACTCCCTGTCCACCCCGCGCTTCAAGAGG 298 * * * ***** * ** * ***** ** * * ************* consensus_2762#0 CCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGA 539 consensus_2762#1 CCACTCACTCCGCGCTCACTCAAGATGATCGCTGATCTGGTGGAGAAGGGGGCATCAGGA 358 ************************************************************ consensus_2762#0 AGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTGAAGATGAT 599 consensus_2762#1 AGACCAAAGCAAAGGCCGTCAAGTTCAAGACGGCATCCATCACCCCGGCCTG-------- 410 **************************************************** consensus_2762#0 CGTTGCTGTCTTGGAGGGCGCCTACATAAATAAATGGGTGCCACCTTNCTTTGCAGGCCG 659 consensus_2762#1 ------------------------------------------------------------ consensus_2762#0 AGGAAGAACCATGAAGATGATGATAGGAGGATGCTCGNTGTGTGCTGNCCTGGTTTTTTG 719 consensus_2762#1 ------------------------------------------------------------ consensus_2762#0 GTTGGTTTGNGCCGCCGAGCCTTGATAGTCCTNCAACCACTGNCACTGATGCATGAGTGG 779 consensus_2762#1 ------------------------------------------------------------ consensus_2762#0 CCTAAGGATGGTTATCTTANACTGGTGCTTGCTGATATGGACCAANGCTGCATCTNTGGG 839 consensus_2762#1 ------------------------------------------------------------ consensus_2762#0 ATGGAANGGCCGACCTGGCG 859 consensus_2762#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||