These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2778#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [GCGGCGCGCTGGGACGTGGCATCTCGGGGCCGGATACCGGGCTCCCCCGGGCCGGGCCGCGGCGGGAGGCCGCGGGCCCGCGCCGGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATAATGCCGCTGCTCCCGTCCCCGGGGCCCGACTCCGACGGCTCCGCCGAGGCGCCGTCCGACGTCATGCCCACCATCCCCTCCAGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCGCTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCGACGACGACGGCGGCGGCGGCGGCGTGGGCGCCTCCCCGTGGCCGTGGGGCCTAGTGGCCATGTGGTTGGTGTAGTGGGCGAGTGGTGCAAGCGACAGCAGCTGCAGCTGCAGTTGCAGCCTTCGGGTTCAGTCGTGCAGGACAAAAAGTTGGCCGTTGGTTGGTCGGTTGGCTTTGCATTCTTGGCAGCCAACATTGTGAAGAAATTGTTGCTTCATTTCACTAAATTTTTTTAGCTTTCGATCTCCTGTAACTTTTTCTGTCAAGTTTACGTAATTGTTTCTGGCTGGGGGCGGCT] [+] EMBL CB967483 [GCGGCGCGCTGGGACGTGGCATCTCGGGGCCGGATACCGGGCTCCCCCGGGCCGGGCCGCGGCGGGAGGCCGCGGGCCCGCGCCGGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATAATGCCGCTGCTCCCGTCCCCGGGGCCCGACTCCGACGGCTCCGCCGAGGCGCCGTCCGACGTCATGCCCACCATCCCCTCCAGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCGCTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCGACGACGACGGCGGCGGCGGCGGCGTGGGCGCCTCCCCGTGGCCGTGGGGCCTAGTGGCCATGTGGTTGGTGTAGTGGGCGAGTGGTGCAAGCGACAGCAGCTGCAGCTGCAGTTGCAGCCTTCGGGTTCAGTCGTGCAGGACAAAAAGTTGGCCGTTGGTTGGTCGGTTGGCTTTGCATTCTTGGCAGCCAACATTGTGAAGAAATTGTTGCTTCATTTCACTAAATTTTTTTAGCTTTCGATCTCCTGTAACTTTTTCTGTCAAGTTTACGTAATTGTTTCTGGCTGGGGGCGGCT] consensusID : consensus_2778#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [GCTAAATTACCTCACTAACGGGACACTAGCGCGGCGCGCTGCGGACGTGGCCATCTCCGCGGCGCCGGAGTACCCGCGGCTCCCCACCGGGCCGGGCCACGGCGGCGGGAGGCACGCGGCGCCCGCGCCCGCGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATACTGCCGCTGCTCCCGTCCCCGGGGCCCGCCTCCGACGGCTCCGCCGACGGCGCCGTCCGCCGTCATGCCCCCCACTCCCCTCCCGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCGCTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCGACGACGACGGCGGCGGCGGCGGCGTGGGCGCTCCCCGTGGCCGAGGGGCTAGATGGCCATGTGGCTTGGTGTAGATGGGCGAGTGGTGCAAGCGACAGCAGCATGCAGCAG] [+] EMBL CB964710 [GCTAAATTACCTCACTAACGGGACACTAGCGCGGCGCGCTGCGGACGTGGCCATCTCCGCGGCGCCGGAGTACCCGCGGCTCCCCACCGGGCCGGGCCACGGCGGCGGGAGGCACGCGGCGCCCGCGCCCGCGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATACTGCCGCTGCTCCCGTCCCCGGGGCCCGCCTCCGACGGCTCCGCCGACGGCGCCGTCCGCCGTCATGCCCCCCACTCCCCTCCCGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCGCTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCGACGACGACGGCGGCGGCGGCGGCGTGGGCGCTCCCCGTGGCCGAGGGGCTAGATGGCCATGTGGCTTGGTGTAGATGGGCGAGTGGTGCAAGCGACAGCAGCATGCAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2778#0 ------------------------------GCGGCGCGCTG-GGACGTGGC-ATCTC--- 25 consensus_2778#1 GCTAAATTACCTCACTAACGGGACACTAGCGCGGCGCGCTGCGGACGTGGCCATCTCCGC 60 *********** ********* ***** consensus_2778#0 GGGGCCGGA-TACCGG--GCTCCCC--CGGGCCGGGCC---GCGGCGGGAGGC-CGCGG- 75 consensus_2778#1 GGCGCCGGAGTACCCGCGGCTCCCCACCGGGCCGGGCCACGGCGGCGGGAGGCACGCGGC 120 ** ****** **** * ******* *********** ************ ***** consensus_2778#0 GCCCGCGCCGG--GCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATAATGCCGCT 133 consensus_2778#1 GCCCGCGCCCGCGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATACTGCCGCT 180 ********* * *************************************** ******* consensus_2778#0 GCTCCCGTCCCCGGGGCCCGACTCCGACGGCTCCGCCGA-GGCGCCGTCCGACGTCATGC 192 consensus_2778#1 GCTCCCGTCCCCGGGGCCCGCCTCCGACGGCTCCGCCGACGGCGCCGTCCGCCGTCATGC 240 ******************** ****************** *********** ******** consensus_2778#0 CCACCA-TCCCCTCCAGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCG 251 consensus_2778#1 CCCCCACTCCCCTCCCGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCG 300 ** *** ******** ******************************************** consensus_2778#0 CTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCG 311 consensus_2778#1 CTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCG 360 ************************************************************ consensus_2778#0 ACGACGACGGCGGCGGCGGCGGCGTGGGCGCCTCCCCGTGGCCGTGGGGCCTAGTGGCCA 371 consensus_2778#1 ACGACGACGGCGGCGGCGGCGGCGTGGGCGC-TCCCCGTGGCCGAGGGGCTAGATGGCCA 419 ******************************* ************ ***** ****** consensus_2778#0 TGTGG-TTGGTGTAG-TGGGCGAGTGGTGCAAGCGACAGCAGC-TGCAGCTGCAGTTGCA 428 consensus_2778#1 TGTGGCTTGGTGTAGATGGGCGAGTGGTGCAAGCGACAGCAGCATGCAGCAG-------- 471 ***** ********* *************************** ****** * consensus_2778#0 GCCTTCGGGTTCAGTCGTGCAGGACAAAAAGTTGGCCGTTGGTTGGTCGGTTGGCTTTGC 488 consensus_2778#1 ------------------------------------------------------------ consensus_2778#0 ATTCTTGGCAGCCAACATTGTGAAGAAATTGTTGCTTCATTTCACTAAATTTTTTTAGCT 548 consensus_2778#1 ------------------------------------------------------------ consensus_2778#0 TTCGATCTCCTGTAACTTTTTCTGTCAAGTTTACGTAATTGTTTCTGGCTGGGGGCGGCT 608 consensus_2778#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||