These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1039 fasta sequence [TTCCAATCGCAGCTGCCTCCCATGGCGACCACCGCCTCCCTCCTCCCTCCTCTCCTCCCGGCCCCTTCCTCCTCCCCCCGCCACCTCCACCCCTCCCCTCGCCACCTCCGCCCCTTGCCACCGATCCGCCTCCTCCGCGCCGCCCGCCGCCGCCACCCCGACGCCGTCGTCGTCGTCCCGGACGCCCGCCCCTGGGTCGGCGACCTCTCGGGCGCCGCCGCGTCCTACCGGGACGGCAGGGAAGAGGACGACGACGACGCGGGGGAGGAGGATGACGAAAACGACGACGACGACGAGGACCGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGCGCGCGCCGCGCCGCCAGGTGAAGTTCTCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTGGTGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCTGGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGACAACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACATACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTACCAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAGGAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGATGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGAGCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAGAGATGTATCGGTCCTTATTAGTGTATGTATTGTTCCATGCTGTTACAACTAGCCGGTGTAGAAAAACTCATGTTTGTTGTATTGAAAGGTGGTGCACGATACCTTTTTGGTTAAAAAGTGAATATCATTTCG] [+] EMBL AK105780 [TTCCAATCGCAGCTGCCTCCCATGGCGACCACCGCCTCCCTCCTCCCTCCTCTCCTCCCGGCCCCTTCCTCCTCCCCCCGCCACCTCCACCCCTCCCCTCGCCACCTCCGCCCCTTGCCACCGATCCGCCTCCTCCGCGCCGCCCGCCGCCGCCACCCCGACGCCGTCGTCGTCGTCCCGGACGCCCGCCCCTGGGTCGGCGACCTCTCGGGCGCCGCCGCGTCCTACCGGGACGGCAGGGAAGAGGACGACGACGACGCGGGGGAGGAGGATGACGAAAACGACGACGACGACGAGGACCGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGCGCGCGCCGCGCCGCCAGGTGAAGTTCTCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTGGTGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCTGGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGACAACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACATACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTACCAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAGGAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGATGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGAGCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAGAGATGTATCGGTCCTTATTAGTGTATGTATTGTTCCATGCTGTTACAACTAGCCGGTGTAGAAAAACTCATGTTTGTTGTATTGAAAGGTGGTGCACGATACCTTTTTGGTTAAAAAGTGAATATCATTTCG] consensusID : consensus_2787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [TGACGACAACGACGACGACGACGAGGACCGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGCGCGCGCCGCGCCGCCAGGTCCGTGCTGCCGCCTTCCGTCCCCGCTGAGCTGGTGAAGTTCTCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTGGCGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCTGGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGACAACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACATACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTACCAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAGGAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGATGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGAGCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAAGATGGGGCCGGTCCTTANTAGGGGATGNATTGGTCC] [+] EMBL CA763896 [TGACGACAACGACGACGACGACGAGGACCGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGCGCGCGCCGCGCCGCCAGGTCCGTGCTGCCGCCTTCCGTCCCCGCTGAGCTGGTGAAGTTCTCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTGGCGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCTGGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGACAACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACATACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTACCAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAGGAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGATGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGAGCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAAGATGGGGCCGGTCCTTANTAGGGGATGNATTGGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2787#0 TTCCAATCGCAGCTGCCTCCCATGGCGACCACCGCCTCCCTCCTCCCTCCTCTCCTCCCG 60 consensus_2787#1 ------------------------------------------------------------ consensus_2787#0 GCCCCTTCCTCCTCCCCCCGCCACCTCCACCCCTCCCCTCGCCACCTCCGCCCCTTGCCA 120 consensus_2787#1 ------------------------------------------------------------ consensus_2787#0 CCGATCCGCCTCCTCCGCGCCGCCCGCCGCCGCCACCCCGACGCCGTCGTCGTCGTCCCG 180 consensus_2787#1 ------------------------------------------------------------ consensus_2787#0 GACGCCCGCCCCTGGGTCGGCGACCTCTCGGGCGCCGCCGCGTCCTACCGGGACGGCAGG 240 consensus_2787#1 ------------------------------------------------------------ consensus_2787#0 GAAGAGGACGACGACGACGCGGGGGAGGAGGATGACGAAAACGACGACGACGACGAGGAC 300 consensus_2787#1 --------------------------------TGACGACAACGACGACGACGACGAGGAC 28 ****** ********************* consensus_2787#0 CGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGC 360 consensus_2787#1 CGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGC 88 ************************************************************ consensus_2787#0 GCGCGCCGCGCCGCCAGGT----------------------------------GAAGTTC 386 consensus_2787#1 GCGCGCCGCGCCGCCAGGTCCGTGCTGCCGCCTTCCGTCCCCGCTGAGCTGGTGAAGTTC 148 ******************* ******* consensus_2787#0 TCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTG 446 consensus_2787#1 TCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTG 208 ************************************************************ consensus_2787#0 GTGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCT 506 consensus_2787#1 GCGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCT 268 * ********************************************************** consensus_2787#0 GGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGAC 566 consensus_2787#1 GGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGAC 328 ************************************************************ consensus_2787#0 AACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACAT 626 consensus_2787#1 AACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACAT 388 ************************************************************ consensus_2787#0 ACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTAC 686 consensus_2787#1 ACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTAC 448 ************************************************************ consensus_2787#0 CAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAG 746 consensus_2787#1 CAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAG 508 ************************************************************ consensus_2787#0 GAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGA 806 consensus_2787#1 GAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGA 568 ************************************************************ consensus_2787#0 TGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGA 866 consensus_2787#1 TGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGA 628 ************************************************************ consensus_2787#0 GCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAGAGATGTATCGGTCCTTATT 926 consensus_2787#1 GCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAAGATGGGGCCGGTCCTTANT 688 **************************************** * ********* * consensus_2787#0 AGTGTATGTATTGTTCCATGCTGTTACAACTAGCCGGTGTAGAAAAACTCATGTTTGTTG 986 consensus_2787#1 AGGGGATGNATTGGTCC------------------------------------------- 705 ** * *** **** *** consensus_2787#0 TATTGAAAGGTGGTGCACGATACCTTTTTGGTTAAAAAGTGAATATCATTTCG 1039 consensus_2787#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||