cluster # 2790

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Oryza sativa
cluster # 2790 cluster # 2790 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2790#0 length = 784 sequences # 1

consensus_2790#1 length = 494 sequences # 1

consensusID : consensus_2790#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 784
fasta sequence

                              [GCAGCGTGGACGCTGAGCCCCGTCTCCGCCCGAGAGGAGCCGGAGGGAGCCGCGCCTGGAGGACTGGAGAAGGAGAGGCGCGCGCGGCAGTCCAGCAGCCGACGAGCCATGCACAAGATCGCGTGCACTCCAGGCAACGAGAAGGCGCTGGTGGAGCGCGAGGGCGCAGGCAGTTCCAGGGAGATGGCGCACAAGAAGCAGATGTACAGACACAGGCACAGATCGAGTTCAGCCTCCGTGGGTTGGATTCCCAGAAGGTTTTCAGGGCAATTCCCGTTGCCCGGGCGAAGGCCCAGAAGGGTTGTTCCCCTCCCGAAGCGGGGCCCTTGTTCCGGAAGGAACCCAGCCGGAAGGGAACCGAACCAAGAAGAACCAAGGGAAAAGTTAAGCCCCCCACCTTCCCCCTCCCGTTCCCTTTCCTTTTGGGTTAAGGTTAATAACCTTCCTTAAGGTTAATTAAGCCTTCCGAATTGGAAAACCAGGTTAAATTGGCCGGCCCGGAAAGGCCTTGCCTTGTTAAGAATGCCTTGGCCTTTGGTTCCTTAAAAGGCCTTTTTTGAATTGGTTTTAATTCCAACGCCAATTTCCAACCAACCATTGTTAAGGCGGCCCTCCCCGGGGGGTTGCCCCCAAAGTTTTGGAAATTTTTTCGGAATTAAGCTGTGCTACTGGGAGAATCCTCTGTGTTTCAAAGCTCTGCTGAAGATTAGCAGAGCTAATGCACCTGTAAATATGTCATCTCTCACAAGACCTTAATATATGATTAACAACTTGCACAAAAAAA]

[+] EMBL BI805368             [GCAGCGTGGACGCTGAGCCCCGTCTCCGCCCGAGAGGAGCCGGAGGGAGCCGCGCCTGGAGGACTGGAGAAGGAGAGGCGCGCGCGGCAGTCCAGCAGCCGACGAGCCATGCACAAGATCGCGTGCACTCCAGGCAACGAGAAGGCGCTGGTGGAGCGCGAGGGCGCAGGCAGTTCCAGGGAGATGGCGCACAAGAAGCAGATGTACAGACACAGGCACAGATCGAGTTCAGCCTCCGTGGGTTGGATTCCCAGAAGGTTTTCAGGGCAATTCCCGTTGCCCGGGCGAAGGCCCAGAAGGGTTGTTCCCCTCCCGAAGCGGGGCCCTTGTTCCGGAAGGAACCCAGCCGGAAGGGAACCGAACCAAGAAGAACCAAGGGAAAAGTTAAGCCCCCCACCTTCCCCCTCCCGTTCCCTTTCCTTTTGGGTTAAGGTTAATAACCTTCCTTAAGGTTAATTAAGCCTTCCGAATTGGAAAACCAGGTTAAATTGGCCGGCCCGGAAAGGCCTTGCCTTGTTAAGAATGCCTTGGCCTTTGGTTCCTTAAAAGGCCTTTTTTGAATTGGTTTTAATTCCAACGCCAATTTCCAACCAACCATTGTTAAGGCGGCCCTCCCCGGGGGGTTGCCCCCAAAGTTTTGGAAATTTTTTCGGAATTAAGCTGTGCTACTGGGAGAATCCTCTGTGTTTCAAAGCTCTGCTGAAGATTAGCAGAGCTAATGCACCTGTAAATATGTCATCTCTCACAAGACCTTAATATATGATTAACAACTTGCACAAAAAAA]




>consensus_2790#0
GCAGCGTGGACGCTGAGCCCCGTCTCCGCCCGAGAGGAGCCGGAGGGAGCCGCGCCTGGA
GGACTGGAGAAGGAGAGGCGCGCGCGGCAGTCCAGCAGCCGACGAGCCATGCACAAGATC
GCGTGCACTCCAGGCAACGAGAAGGCGCTGGTGGAGCGCGAGGGCGCAGGCAGTTCCAGG
GAGATGGCGCACAAGAAGCAGATGTACAGACACAGGCACAGATCGAGTTCAGCCTCCGTG
GGTTGGATTCCCAGAAGGTTTTCAGGGCAATTCCCGTTGCCCGGGCGAAGGCCCAGAAGG
GTTGTTCCCCTCCCGAAGCGGGGCCCTTGTTCCGGAAGGAACCCAGCCGGAAGGGAACCG
AACCAAGAAGAACCAAGGGAAAAGTTAAGCCCCCCACCTTCCCCCTCCCGTTCCCTTTCC
TTTTGGGTTAAGGTTAATAACCTTCCTTAAGGTTAATTAAGCCTTCCGAATTGGAAAACC
AGGTTAAATTGGCCGGCCCGGAAAGGCCTTGCCTTGTTAAGAATGCCTTGGCCTTTGGTT
CCTTAAAAGGCCTTTTTTGAATTGGTTTTAATTCCAACGCCAATTTCCAACCAACCATTG
TTAAGGCGGCCCTCCCCGGGGGGTTGCCCCCAAAGTTTTGGAAATTTTTTCGGAATTAAG
CTGTGCTACTGGGAGAATCCTCTGTGTTTCAAAGCTCTGCTGAAGATTAGCAGAGCTAAT
GCACCTGTAAATATGTCATCTCTCACAAGACCTTAATATATGATTAACAACTTGCACAAA
AAAA

consensusID : consensus_2790#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [CGAGGCCGCAGCTCCGGGAGATGGCGCAGCAGAAGCAGATGTACGACCGGCACAGATCGAGTCGCTCCAGTGGGTGATCCAGAGGTTCGGCATGCCGTGCGGCGAGGCCGAGGTGTCCTCCGAGCGGGCCGTGTCGGAGACCAGCGAGGACGACAGAGACAGGAAGTAGCCCACTCCCTCCTTCCTTCTTGGTAGTATACTCTAGTATAGCTCGATGAAACAGTAATGGCGGCCGAAGCTGCTGTAGATGCTGCTTGTCTAAAAGCTTTTGATGGTTTCATCAGCATTCAGCAGCAATGTAGGGGCCTCCGGGGTGCCCAAGTTTTGAAATTTCGATAGCTGGTGCTACTGGGAGAATCCTCTGGTGGTTGTCAAAGCTCTGCTGAAGATTAGCAGAGCTAATGCACCTGTAAATATGTCATCTTTCACAAGACCTTAATATATGATTAACATTGCACACATATGCTTCATATGTTTTTGTTGTTCAAAAAAAA]

[+] EMBL BI806845             [CGAGGCCGCAGCTCCGGGAGATGGCGCAGCAGAAGCAGATGTACGACCGGCACAGATCGAGTCGCTCCAGTGGGTGATCCAGAGGTTCGGCATGCCGTGCGGCGAGGCCGAGGTGTCCTCCGAGCGGGCCGTGTCGGAGACCAGCGAGGACGACAGAGACAGGAAGTAGCCCACTCCCTCCTTCCTTCTTGGTAGTATACTCTAGTATAGCTCGATGAAACAGTAATGGCGGCCGAAGCTGCTGTAGATGCTGCTTGTCTAAAAGCTTTTGATGGTTTCATCAGCATTCAGCAGCAATGTAGGGGCCTCCGGGGTGCCCAAGTTTTGAAATTTCGATAGCTGGTGCTACTGGGAGAATCCTCTGGTGGTTGTCAAAGCTCTGCTGAAGATTAGCAGAGCTAATGCACCTGTAAATATGTCATCTTTCACAAGACCTTAATATATGATTAACATTGCACACATATGCTTCATATGTTTTTGTTGTTCAAAAAAAA]




>consensus_2790#1
CGAGGCCGCAGCTCCGGGAGATGGCGCAGCAGAAGCAGATGTACGACCGGCACAGATCGA
GTCGCTCCAGTGGGTGATCCAGAGGTTCGGCATGCCGTGCGGCGAGGCCGAGGTGTCCTC
CGAGCGGGCCGTGTCGGAGACCAGCGAGGACGACAGAGACAGGAAGTAGCCCACTCCCTC
CTTCCTTCTTGGTAGTATACTCTAGTATAGCTCGATGAAACAGTAATGGCGGCCGAAGCT
GCTGTAGATGCTGCTTGTCTAAAAGCTTTTGATGGTTTCATCAGCATTCAGCAGCAATGT
AGGGGCCTCCGGGGTGCCCAAGTTTTGAAATTTCGATAGCTGGTGCTACTGGGAGAATCC
TCTGGTGGTTGTCAAAGCTCTGCTGAAGATTAGCAGAGCTAATGCACCTGTAAATATGTC
ATCTTTCACAAGACCTTAATATATGATTAACATTGCACACATATGCTTCATATGTTTTTG
TTGTTCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2790#0      GCAGCGTGGACGCTGAGCCCCGTCTCCGCCCGAGAGGAGCCGGAGGGAGCCGCGCCTGGA 60
consensus_2790#1      ------------------------------------------------------------
                                                                                  

consensus_2790#0      GGACTGGAGAAGGAGAGGCGCGCGCGGCAGTCCAGCAGCCGACGAGCCATGCACAAGATC 120
consensus_2790#1      ------------------------------------------------------------
                                                                                  

consensus_2790#0      GCGTGCACTCCAGGCAACGAGAAGGCGCTGGTGGAGCGCGAGGGCGCAGGCAGTTCCAGG 180
consensus_2790#1      --------------------------------------CGAGGCCGCAG-----CTCCGG 17
                                                            ***** *****       * **

consensus_2790#0      GAGATGGCGCACAAGAAGCAGATGTACAGACACAGGCACAGATCGAGTTCAGCCTCCGTG 240
consensus_2790#1      GAGATGGCGCAGCAGAAGCAGATGTACG---ACCGGCACAGATCGAGTC--GCTCCAGTG 72
                      ***********  **************    ** **************   **  * ***

consensus_2790#0      GGTTGGATTCCCAGAAGGTTTTCAGGGCAATTCCCGTTGCCCGGGCGAAGGCCCAGAAGG 300
consensus_2790#1      GGT--GATCC---AGAGGTTC----GGCA--TGCCGT-GC---GGCGAGGCC------GA 111
                      ***  *** *     *****     ****  * **** **   ***** * *      * 

consensus_2790#0      GTTGTTCCCCTCCCGAAGCGGGGCCCTTGTTCCGGAAGGAACCCAGCCGGAAGGGAACCG 360
consensus_2790#1      GGTGTCCTCC-----GAGCGGG--CCGTGTC------GGAGACCAGC--GAGGACGACAG 156
                      * *** * **      ******  ** ***       ***  *****  ** *   ** *

consensus_2790#0      AACCAAGAAGAACCAAGGGAAAAGTTAAGCCCCCCACCTTCCCCCTCCCGTTCCCTTTCC 420
consensus_2790#1      AGACAGGAAGTA----------------GCCCACTCCCT--------------CCTTCCT 186
                      *  ** **** *                **** *  ***              **** * 

consensus_2790#0      TTTTGGGTTAAGGTTAATAACCTTCCTTAAGGTTAATTAAGCCTTCCGAATTGGAAAACC 480
consensus_2790#1      TCTTGG--------TAGTATACTC---------TAGTATAGCTCGATGAAACAGTAA--- 226
                      * ****        ** **  **          ** *  ***     ***   * **   

consensus_2790#0      AGGTTAAATTGGCCGGCCCGGAAAGGCCTTGCCTTGTTAAGAATGCCTTGGCCTTTGGTT 540
consensus_2790#1      ---------TGGC--GGCCGAAG----------CTGCTGTAGATGC---------TGCTT 256
                               ****  * *** *            ** *    ****         ** **

consensus_2790#0      CCTTAAAAGGCCTTTTTTGAATTGGTTTTAATTCCAACGCCAATTTCCAACCAACCATTG 600
consensus_2790#1      GTCTAAAAG----CTTTTGA--TGGTTTCA---------TCAGCATTCAGC--AGCAATG 299
                         ******     ******  ****** *          **   * ** *  * ** **

consensus_2790#0      TTAAGGCGGCCCTCCCCGGGGGGTTGCCCCCAAAGTTTTGGAAATTTTTTCGGAATTAAG 660
consensus_2790#1      TAGGGGC------CTCCGGGG---TGCCC---AAGTTTTGAAA----TTTCGA---TAGC 340
                      *   ***      * ******   *****   ******** **    *****    **  

consensus_2790#0      CTGTGCTACTGGGAGAATCCTCTG-TGTTT--CAAAGCTCTGCTGAAGATTAGCAGAGCT 717
consensus_2790#1      TGGTGCTACTGGGAGAATCCTCTGGTGGTTGTCAAAGCTCTGCTGAAGATTAGCAGAGCT 400
                        ********************** ** **  ****************************

consensus_2790#0      AATGCACCTGTAAATATGTCATCTCTCACAAGACCTTAATATATGATTAACAACTTGCAC 777
consensus_2790#1      AATGCACCTGTAAATATGTCATCTTTCACAAGACCTTAATATATGATTAACA--TTGCAC 458
                      ************************ ***************************  ******

consensus_2790#0      AAAAAAA----------------------------- 784
consensus_2790#1      ACATATGCTTCATATGTTTTTGTTGTTCAAAAAAAA 494
                      * * *