These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2825#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [GGGGACCGGCGGATCGGAGGCGGGCGGCGGGAAGGGTGGCGGGGACGTGATCCGGCTCGAAGGGGAGGAGGCGCCCACCGAGGAGACGCCTCTGGTGGACGAGGTGTTCGAGGCCGTCCGATCCCGCGGCGCCGGCGTCCATGTGGTCCCTACCTTCGCCGGATGGTTTTCATGTAAGGAAATCCACCCAATTGAGAAGCAAATGTTGCCTTCTTTTTTCAATGGCAAATCTGACAAGCGGACACCTGAGATATATTTAGGGATCAGAAATTTCATCATGTTGAAATTTCATGCTAATCCTCAGTTGCAGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCATCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCTTGATCAATTTCCACCCTTTTCTACCAGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAAAGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTTACCAAAGAAAGGGGAAGTGGAAACTCCAGCTCCTCTGCCTAGTTTGCTTCCTGATCCTGCACTAATTGAAGATGTAGTTTCAGCAGCCGAGCCCTCTGTTGAGTACCATTGCAATTCCTGCTCTGTTGAT] [+] EMBL CB965545 [GGGGACCGGCGGATCGGAGGCGGGCGGCGGGAAGGGTGGCGGGGACGTGATCCGGCTCGAAGGGGAGGAGGCGCCCACCGAGGAGACGCCTCTGGTGGACGAGGTGTTCGAGGCCGTCCGATCCCGCGGCGCCGGCGTCCATGTGGTCCCTACCTTCGCCGGATGGTTTTCATGTAAGGAAATCCACCCAATTGAGAAGCAAATGTTGCCTTCTTTTTTCAATGGCAAATCTGACAAGCGGACACCTGAGATATATTTAGGGATCAGAAATTTCATCATGTTGAAATTTCATGCTAATCCTCAGTTGCAGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCATCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCTTGATCAATTTCCACCCTTTTCTACCAGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAAAGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTTACCAAAGAAAGGGGAAGTGGAAACTCCAGCTCCTCTGCCTAGTTTGCTTCCTGATCCTGCACTAATTGAAGATGTAGTTTCAGCAGCCGAGCCCTCTGTTGAGTACCATTGCAATTCCTGCTCTGTTGAT] consensusID : consensus_2825#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [TACTTCCGGATTTCTTAAGGAAATCCACCAATTGAGAAGCAATGTTGCCTTCTTCAATGGCAATCTGACGCGGACCCTGAGATATTTAGGGATCAGAAATTCCATGTGAAATCATGCTAATCCTCAGTTGCGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCATCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCGATATTTCCACCCTTTTCTACCAGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAAAGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTTACCAAAGAAAGGGGAAGGGAACTCCAGCTCCTCGCCTATTGCTTCCTGATCCTGCACTATGAAGAGTAGTTCAGCAGCGACCCTCTGTGAGTACATGCAATTCTGCTCGTGATGCCAAGAACGTACATGCCGACCAGCGA] [+] EMBL CB966129 [TACTTCCGGATTTCTTAAGGAAATCCACCAATTGAGAAGCAATGTTGCCTTCTTCAATGGCAATCTGACGCGGACCCTGAGATATTTAGGGATCAGAAATTCCATGTGAAATCATGCTAATCCTCAGTTGCGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCATCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCGATATTTCCACCCTTTTCTACCAGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAAAGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTTACCAAAGAAAGGGGAAGGGAACTCCAGCTCCTCGCCTATTGCTTCCTGATCCTGCACTATGAAGAGTAGTTCAGCAGCGACCCTCTGTGAGTACATGCAATTCTGCTCGTGATGCCAAGAACGTACATGCCGACCAGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2825#0 GGGGACCGGCGGATCGGAGGCGGGCGGCGGGAAGGGTGGCGGGGACGTGATCCGGCTCGA 60 consensus_2825#1 ------------------------------------------------------------ consensus_2825#0 AGGGGAGGAGGCGCCCACCGAGGAGACGCCTCTGGTGGACGAGGTGTTCGAGGCCGTCCG 120 consensus_2825#1 ------------------------------------------------------------ consensus_2825#0 ATCCCGCGGCGCCGGCGTCCATGTGGTCCCTACCTTCGCCGGATGGTTTTCATGTAAGGA 180 consensus_2825#1 ------------------------------TACTTCCG------GATTTCT---TAAGGA 21 *** * ** * *** ****** consensus_2825#0 AATCCACCCAATTGAGAAGCAAATGTTGCCTTCTTTTTTCAATGGCAAATCTGACAAGCG 240 consensus_2825#1 AATCCACC-AATTGAGAAGCAA-TGTTGCCTTCTT----CAATGGCAA-TCTGAC--GCG 72 ******** ************* ************ ********* ****** *** consensus_2825#0 GACACCTGAGATATATTTAGGGATCAGAAATTTCATCATGTTGAAATTTCATGCTAATCC 300 consensus_2825#1 GAC-CCTGAGATAT--TTAGGGATCAGAAATTCCATG----TGAAAT--CATGCTAATCC 123 *** ********** **************** *** ****** *********** consensus_2825#0 TCAGTTGCAGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCA 360 consensus_2825#1 TCAGTTGC-GCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCA 182 ******** *************************************************** consensus_2825#0 TCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCTTGATCAATTTCCACCCTTTTCTACC 420 consensus_2825#1 TCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGC--GAT--ATTTCCACCCTTTTCTACC 238 ********************************** *** ******************* consensus_2825#0 AGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAA 480 consensus_2825#1 AGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAA 298 ************************************************************ consensus_2825#0 AGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTT 540 consensus_2825#1 AGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTT 358 ************************************************************ consensus_2825#0 ACCAAAGAAAGGGGAAGTGGAAACTCCAGCTCCTCTGCCTAGTTTGCTTCCTGATCCTGC 600 consensus_2825#1 ACCAAAGAAAGGGGAAG--GGAACTCCAGCTCCTC-GCCTA--TTGCTTCCTGATCCTGC 413 ***************** * ************** ***** ***************** consensus_2825#0 ACTAATTGAAGATGTAGTTTCAGCAGCCGAGCCCTCTGTTGAGTACCATTGCAATTCCTG 660 consensus_2825#1 ACTA--TGAAGA-GTAGTT-CAGCAGC--GACCCTCTGT-GAGTACA--TGCAATTCTGC 464 **** ****** ****** ******* ******** ****** ******** consensus_2825#0 CTCTGTTGAT------------------------ 670 consensus_2825#1 TCGTGATGCCAAGAACGTACATGCCGACCAGCGA 498 ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||